Wall clock time and date at job start Mon Mar 30 2020 07:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32645 * 120.00647 * 2 1 4 4 C 1.47725 * 119.99273 * 352.78868 * 3 2 1 5 5 C 1.39648 * 120.06994 * 146.89523 * 4 3 2 6 6 C 1.37783 * 119.92394 * 179.97438 * 5 4 3 7 7 C 1.39030 * 120.07419 * 359.97022 * 6 5 4 8 8 O 1.35678 * 119.92743 * 180.02562 * 7 6 5 9 9 C 1.34814 * 117.00059 * 354.46618 * 8 7 6 10 10 H 1.08006 * 119.99958 * 5.06993 * 9 8 7 11 11 C 1.38644 * 120.00136 * 185.07818 * 9 8 7 12 12 N 1.31557 * 120.00286 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00068 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47174 * 89.99449 * 13 11 9 15 15 H 1.48494 * 109.47244 * 209.99748 * 13 11 9 16 16 H 1.48499 * 109.46803 * 329.99788 * 13 11 9 17 17 C 1.39031 * 120.14584 * 0.02562 * 7 6 5 18 18 C 1.37782 * 120.07555 * 0.02562 * 17 7 6 19 19 C 1.50702 * 119.99582 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47158 * 50.00300 * 19 2 1 21 21 C 1.52998 * 109.47405 * 289.99967 * 19 2 1 22 22 Cl 1.80306 * 109.47048 * 170.00081 * 19 2 1 23 23 H 1.09000 * 109.46862 * 93.60333 * 1 2 3 24 24 H 1.08992 * 109.47472 * 213.60394 * 1 2 3 25 25 H 1.09002 * 109.46602 * 333.60675 * 1 2 3 26 26 H 1.07992 * 120.00225 * 172.78282 * 3 2 1 27 27 H 1.07993 * 120.03684 * 0.24439 * 5 4 3 28 28 H 1.08001 * 119.95703 * 179.97438 * 6 5 4 29 29 H 0.97001 * 120.00148 * 180.02562 * 12 11 9 30 30 H 1.07998 * 119.96393 * 180.02562 * 17 7 6 31 31 H 1.08001 * 120.03616 * 179.97438 * 18 17 7 32 32 H 1.09004 * 109.47222 * 59.99487 * 21 19 2 33 33 H 1.08996 * 109.47696 * 180.02562 * 21 19 2 34 34 H 1.09002 * 109.47234 * 300.00286 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1704 1.1487 0.0000 4 6 1.4405 2.4229 -0.1606 5 6 1.8963 3.5761 0.4817 6 6 1.2135 4.7632 0.3294 7 6 0.0723 4.8138 -0.4632 8 8 -0.5974 5.9843 -0.6115 9 6 -0.1722 7.0304 0.1250 10 1 0.7157 6.9374 0.7329 11 6 -0.8747 8.2255 0.1022 12 7 -1.9560 8.3389 -0.6385 13 14 -0.2858 9.6747 1.1233 14 1 0.6527 10.4980 0.3192 15 1 -1.4510 10.5028 1.5256 16 1 0.4090 9.1752 2.3370 17 6 -0.3841 3.6675 -1.1041 18 6 0.2934 2.4770 -0.9551 19 6 2.2604 -1.3052 -0.0006 20 1 1.8700 -1.9497 -0.7882 21 6 2.0881 -1.9942 1.3546 22 17 4.0108 -0.9886 -0.2956 23 1 -0.3633 -0.0646 -1.0256 24 1 -0.3634 -0.8558 0.5687 25 1 -0.3632 0.9206 0.4568 26 1 3.2439 1.1523 0.1175 27 1 2.7853 3.5386 1.0936 28 1 1.5653 5.6552 0.8262 29 1 -2.4472 9.1752 -0.6547 30 1 -1.2706 3.7102 -1.7194 31 1 -0.0619 1.5869 -1.4530 32 1 1.0300 -2.1855 1.5330 33 1 2.6334 -2.9379 1.3544 34 1 2.4786 -1.3496 2.1421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309502492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:21 Heat of formation + Delta-G solvation = -5.806678 kcal Electronic energy + Delta-G solvation = -17112.817829 eV Core-core repulsion = 14230.331239 eV Total energy + Delta-G solvation = -2882.486590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.20532 -37.67323 -36.33524 -34.83802 -32.41656 -31.35913 -30.41369 -28.38815 -26.95971 -25.32731 -23.46300 -21.85113 -20.87495 -18.25303 -18.04309 -16.78525 -15.83426 -15.36005 -14.61871 -14.52401 -14.32289 -13.76735 -13.62555 -13.58139 -12.98963 -12.82009 -12.55070 -12.06470 -11.99502 -11.84455 -11.71766 -11.42314 -11.27314 -10.90397 -10.73206 -10.58235 -10.49634 -10.46667 -10.24914 -9.42934 -9.09831 -8.63516 -8.21109 -6.99521 -6.51696 -4.08965 1.65015 2.14503 2.21483 2.86495 3.10358 3.12106 3.15715 3.91987 4.52637 4.58891 4.82746 4.91877 5.04471 5.20992 5.25607 5.41705 5.51750 5.57291 5.60199 5.65455 5.79916 5.91115 5.93877 6.15021 6.21396 6.33905 6.61600 6.68318 6.80907 6.96166 7.06460 7.25159 7.37763 7.41568 7.77821 7.93618 8.93765 9.62937 10.65852 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.042143 B = 0.003651 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.238366 B = 7667.537854 C = 7988.048915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.189 4.189 3 C -0.059 4.059 4 C -0.170 4.170 5 C -0.052 4.052 6 C -0.238 4.238 7 C 0.160 3.840 8 O -0.173 6.173 9 C -0.393 4.393 10 H 0.094 0.906 11 C 0.040 3.960 12 N -0.860 5.860 13 Si 0.942 3.058 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.267 1.267 17 C -0.199 4.199 18 C -0.060 4.060 19 C 0.049 3.951 20 H 0.102 0.898 21 C -0.153 4.153 22 Cl -0.186 7.186 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -16.125 2.658 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.190 4.190 3 C -0.077 4.077 4 C -0.170 4.170 5 C -0.070 4.070 6 C -0.257 4.257 7 C 0.105 3.895 8 O -0.075 6.075 9 C -0.469 4.469 10 H 0.111 0.889 11 C -0.165 4.165 12 N -0.494 5.494 13 Si 0.766 3.234 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.191 1.191 17 C -0.219 4.219 18 C -0.078 4.078 19 C 0.006 3.994 20 H 0.120 0.880 21 C -0.210 4.210 22 Cl -0.160 7.160 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.091 -15.829 2.446 17.136 hybrid contribution 0.482 0.797 0.489 1.052 sum 6.573 -15.033 2.934 16.667 Atomic orbital electron populations 1.20987 0.91202 1.02841 1.01427 1.21623 0.95711 0.92704 1.08943 1.21759 0.99105 0.91082 0.95753 1.18448 0.99284 0.93083 1.06236 1.20858 0.97729 0.91713 0.96725 1.21103 0.99098 0.98836 1.06650 1.19511 0.90586 0.87074 0.92334 1.83949 1.51215 1.15075 1.57276 1.21378 1.11523 0.88968 1.24990 0.88888 1.25318 0.95387 0.98316 0.97457 1.70037 1.15699 1.26750 1.36891 0.85696 0.78390 0.79876 0.79406 1.19790 1.20174 1.19108 1.20163 1.03490 0.91057 1.07158 1.21084 0.93585 0.96535 0.96645 1.22818 0.79888 0.96714 0.99982 0.88040 1.22104 1.02891 1.00555 0.95455 1.98701 1.23614 1.96605 1.97053 0.91815 0.92888 0.90056 0.86270 0.87353 0.85441 0.91888 0.86441 0.86069 0.90698 0.91717 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.15 36.01 0.29 -0.96 16 2 C -0.19 -2.35 5.28 -101.24 -0.53 -2.88 16 3 C -0.06 -0.87 8.93 -37.60 -0.34 -1.20 16 4 C -0.17 -2.96 5.23 -104.97 -0.55 -3.51 16 5 C -0.05 -0.97 9.78 -39.22 -0.38 -1.35 16 6 C -0.24 -5.14 9.15 -39.45 -0.36 -5.50 16 7 C 0.16 3.82 6.65 -38.99 -0.26 3.56 16 8 O -0.17 -4.87 9.75 0.32 0.00 -4.87 16 9 C -0.39 -10.84 9.48 30.88 0.29 -10.55 16 10 H 0.09 2.37 5.19 -52.48 -0.27 2.10 16 11 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 12 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 13 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 C -0.20 -4.16 9.97 -39.45 -0.39 -4.55 16 18 C -0.06 -1.07 7.56 -39.22 -0.30 -1.37 16 19 C 0.05 0.50 3.68 -27.88 -0.10 0.40 16 20 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.29 9.23 37.16 0.34 -0.95 16 22 Cl -0.19 -2.17 26.34 -51.86 -1.37 -3.53 16 23 H 0.06 0.69 6.87 -51.93 -0.36 0.33 16 24 H 0.05 0.51 7.21 -51.93 -0.37 0.13 16 25 H 0.08 1.12 5.92 -51.93 -0.31 0.81 16 26 H 0.12 1.71 6.16 -52.49 -0.32 1.39 16 27 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.13 2.75 5.62 -52.49 -0.29 2.46 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 30 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.12 1.81 5.24 -52.49 -0.28 1.54 16 32 H 0.07 0.56 7.27 -51.93 -0.38 0.18 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -29.41 297.56 -7.36 -36.77 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.83 Total: 3.94 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -2.38 Total: -27.87 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.76 Total: -24.13 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: 0.00 Total: -4.87 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.37 Total: -3.53 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.41 -7.36 -36.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309502492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.962 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds