Wall clock time and date at job start Mon Mar 30 2020 07:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32645 * 120.00647 * 2 1 4 4 C 1.47725 * 119.99273 * 352.78868 * 3 2 1 5 5 C 1.39648 * 120.06994 * 146.89523 * 4 3 2 6 6 C 1.37783 * 119.92394 * 179.97438 * 5 4 3 7 7 C 1.39030 * 120.07419 * 359.97022 * 6 5 4 8 8 O 1.35678 * 119.92743 * 180.02562 * 7 6 5 9 9 C 1.34814 * 117.00059 * 354.46618 * 8 7 6 10 10 H 1.08006 * 119.99958 * 5.06993 * 9 8 7 11 11 C 1.38644 * 120.00136 * 185.07818 * 9 8 7 12 12 N 1.31557 * 120.00286 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00068 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47174 * 89.99449 * 13 11 9 15 15 H 1.48494 * 109.47244 * 209.99748 * 13 11 9 16 16 H 1.48499 * 109.46803 * 329.99788 * 13 11 9 17 17 C 1.39031 * 120.14584 * 0.02562 * 7 6 5 18 18 C 1.37782 * 120.07555 * 0.02562 * 17 7 6 19 19 C 1.50702 * 119.99582 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47158 * 50.00300 * 19 2 1 21 21 C 1.52998 * 109.47405 * 289.99967 * 19 2 1 22 22 Cl 1.80306 * 109.47048 * 170.00081 * 19 2 1 23 23 H 1.09000 * 109.46862 * 93.60333 * 1 2 3 24 24 H 1.08992 * 109.47472 * 213.60394 * 1 2 3 25 25 H 1.09002 * 109.46602 * 333.60675 * 1 2 3 26 26 H 1.07992 * 120.00225 * 172.78282 * 3 2 1 27 27 H 1.07993 * 120.03684 * 0.24439 * 5 4 3 28 28 H 1.08001 * 119.95703 * 179.97438 * 6 5 4 29 29 H 0.97001 * 120.00148 * 180.02562 * 12 11 9 30 30 H 1.07998 * 119.96393 * 180.02562 * 17 7 6 31 31 H 1.08001 * 120.03616 * 179.97438 * 18 17 7 32 32 H 1.09004 * 109.47222 * 59.99487 * 21 19 2 33 33 H 1.08996 * 109.47696 * 180.02562 * 21 19 2 34 34 H 1.09002 * 109.47234 * 300.00286 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1704 1.1487 0.0000 4 6 1.4405 2.4229 -0.1606 5 6 1.8963 3.5761 0.4817 6 6 1.2135 4.7632 0.3294 7 6 0.0723 4.8138 -0.4632 8 8 -0.5974 5.9843 -0.6115 9 6 -0.1722 7.0304 0.1250 10 1 0.7157 6.9374 0.7329 11 6 -0.8747 8.2255 0.1022 12 7 -1.9560 8.3389 -0.6385 13 14 -0.2858 9.6747 1.1233 14 1 0.6527 10.4980 0.3192 15 1 -1.4510 10.5028 1.5256 16 1 0.4090 9.1752 2.3370 17 6 -0.3841 3.6675 -1.1041 18 6 0.2934 2.4770 -0.9551 19 6 2.2604 -1.3052 -0.0006 20 1 1.8700 -1.9497 -0.7882 21 6 2.0881 -1.9942 1.3546 22 17 4.0108 -0.9886 -0.2956 23 1 -0.3633 -0.0646 -1.0256 24 1 -0.3634 -0.8558 0.5687 25 1 -0.3632 0.9206 0.4568 26 1 3.2439 1.1523 0.1175 27 1 2.7853 3.5386 1.0936 28 1 1.5653 5.6552 0.8262 29 1 -2.4472 9.1752 -0.6547 30 1 -1.2706 3.7102 -1.7194 31 1 -0.0619 1.5869 -1.4530 32 1 1.0300 -2.1855 1.5330 33 1 2.6334 -2.9379 1.3544 34 1 2.4786 -1.3496 2.1421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309502492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:20 Heat of formation + Delta-G solvation = -21.496537 kcal Electronic energy + Delta-G solvation = -17113.498192 eV Core-core repulsion = 14230.331239 eV Total energy + Delta-G solvation = -2883.166953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85947 -39.08060 -37.54363 -35.94080 -34.31268 -32.47174 -31.99507 -29.64881 -28.28571 -27.12758 -24.50251 -23.47778 -22.33709 -19.90876 -19.46116 -18.48533 -17.01462 -16.50835 -16.32601 -15.92621 -15.68556 -15.50820 -14.95143 -14.74665 -14.51259 -14.12093 -13.75085 -13.57416 -13.31988 -12.91409 -12.90988 -12.81478 -12.44642 -12.37664 -12.22186 -12.11065 -11.76168 -11.43404 -11.31080 -11.13445 -10.86886 -10.08583 -9.79037 -8.57764 -8.48708 -6.16212 0.27093 0.59790 1.29359 1.34748 1.40140 1.51944 1.58106 2.16799 2.85107 3.17991 3.48730 3.56670 4.04225 4.06937 4.13098 4.14509 4.25359 4.38204 4.52543 4.70497 4.72486 4.84669 4.85294 4.90834 5.06392 5.14193 5.17609 5.24500 5.29449 5.47913 5.60821 5.68296 5.75051 5.99320 6.02255 6.19464 6.95582 7.75341 8.73872 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.042143 B = 0.003651 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.238366 B = 7667.537854 C = 7988.048915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.148 4.148 3 C -0.099 4.099 4 C -0.139 4.139 5 C -0.060 4.060 6 C -0.244 4.244 7 C 0.117 3.883 8 O -0.228 6.228 9 C -0.416 4.416 10 H 0.102 0.898 11 C -0.021 4.021 12 N -0.919 5.919 13 Si 1.018 2.982 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.253 1.253 17 C -0.206 4.206 18 C -0.055 4.055 19 C 0.046 3.954 20 H 0.127 0.873 21 C -0.151 4.151 22 Cl -0.199 7.199 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -19.347 3.547 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.148 4.148 3 C -0.116 4.116 4 C -0.140 4.140 5 C -0.078 4.078 6 C -0.264 4.264 7 C 0.066 3.934 8 O -0.134 6.134 9 C -0.492 4.492 10 H 0.119 0.881 11 C -0.219 4.219 12 N -0.557 5.557 13 Si 0.837 3.163 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.177 1.177 17 C -0.225 4.225 18 C -0.072 4.072 19 C 0.003 3.997 20 H 0.145 0.855 21 C -0.208 4.208 22 Cl -0.172 7.172 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.173 0.827 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.504 -19.115 3.339 20.805 hybrid contribution 0.169 1.234 0.202 1.262 sum 7.674 -17.881 3.541 19.778 Atomic orbital electron populations 1.21094 0.90372 1.03160 1.02793 1.22022 0.96420 0.93134 1.03242 1.21644 0.99410 0.90268 1.00320 1.18868 0.98033 0.94019 1.03072 1.21183 0.98455 0.90991 0.97157 1.21184 0.98841 0.99917 1.06414 1.20042 0.91814 0.87086 0.94409 1.83918 1.53446 1.16494 1.59589 1.21841 1.12157 0.89647 1.25538 0.88105 1.26585 0.95401 1.01196 0.98689 1.70178 1.17847 1.27834 1.39794 0.84594 0.78129 0.75659 0.77883 1.18792 1.19450 1.17699 1.20421 1.03933 0.91377 1.06815 1.21433 0.93263 0.96319 0.96219 1.23063 0.78859 0.95637 1.02109 0.85533 1.22113 1.04154 1.00832 0.93700 1.98713 1.24755 1.96637 1.97141 0.90126 0.89924 0.92177 0.85683 0.84550 0.86264 0.91742 0.86504 0.82663 0.89116 0.90192 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.15 71.24 0.58 -1.61 16 2 C -0.15 -3.01 5.28 -17.61 -0.09 -3.11 16 3 C -0.10 -2.56 8.93 23.61 0.21 -2.35 16 4 C -0.14 -4.56 5.23 -20.09 -0.11 -4.67 16 5 C -0.06 -2.17 9.78 22.50 0.22 -1.95 16 6 C -0.24 -10.88 9.15 22.35 0.20 -10.67 16 7 C 0.12 5.89 6.65 22.65 0.15 6.04 16 8 O -0.23 -13.81 9.75 -21.78 -0.21 -14.02 16 9 C -0.42 -24.36 9.48 67.92 0.64 -23.71 16 10 H 0.10 5.44 5.19 -2.91 -0.02 5.42 16 11 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 12 N -0.92 -56.35 13.67 21.61 0.30 -56.06 16 13 Si 1.02 42.87 29.55 68.60 2.03 44.90 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 17 C -0.21 -8.77 9.97 22.35 0.22 -8.55 16 18 C -0.05 -1.84 7.56 22.50 0.17 -1.67 16 19 C 0.05 0.72 3.68 29.85 0.11 0.83 16 20 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.15 -1.84 9.23 71.98 0.66 -1.17 16 22 Cl -0.20 -3.97 26.34 -2.72 -0.07 -4.04 16 23 H 0.08 1.32 6.87 -2.39 -0.02 1.30 16 24 H 0.08 1.12 7.21 -2.39 -0.02 1.10 16 25 H 0.06 1.44 5.92 -2.39 -0.01 1.42 16 26 H 0.13 3.20 6.16 -2.91 -0.02 3.18 16 27 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 28 H 0.12 5.39 5.62 -2.91 -0.02 5.37 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 31 H 0.16 4.11 5.24 -2.91 -0.02 4.09 16 32 H 0.09 0.85 7.27 -2.39 -0.02 0.84 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -69.04 297.56 6.60 -62.44 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.12 Total: 20.09 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.45 Total: -53.31 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.30 Total: -56.06 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.21 Total: -14.02 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -3.97 SS G_CDS: -0.07 Total: -4.04 kcal Total: -69.04 6.60 -62.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309502492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.946 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds