Wall clock time and date at job start Mon Mar 30 2020 07:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32670 * 120.00179 * 2 1 4 4 C 1.47678 * 120.00300 * 186.93438 * 3 2 1 5 5 C 1.39500 * 120.18062 * 42.16877 * 4 3 2 6 6 C 1.37956 * 119.92209 * 180.02562 * 5 4 3 7 7 C 1.38476 * 120.29708 * 0.02562 * 6 5 4 8 8 C 1.38119 * 120.36818 * 0.02645 * 7 6 5 9 9 C 1.38735 * 120.07002 * 359.66958 * 8 7 6 10 10 O 1.35642 * 120.14954 * 180.32514 * 9 8 7 11 11 C 1.34807 * 117.00205 * 354.43973 * 10 9 8 12 12 H 1.07998 * 119.99477 * 5.07529 * 11 10 9 13 13 C 1.38646 * 120.00167 * 185.07395 * 11 10 9 14 14 N 1.31551 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99836 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47767 * 59.99668 * 15 13 11 17 17 H 1.48505 * 109.47092 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47148 * 299.99504 * 15 13 11 19 19 C 1.50704 * 120.00014 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.46824 * 185.09638 * 19 2 1 21 21 C 1.52993 * 109.46945 * 65.09841 * 19 2 1 22 22 Cl 1.80301 * 109.47073 * 305.09734 * 19 2 1 23 23 H 1.09006 * 109.46863 * 270.00730 * 1 2 3 24 24 H 1.09001 * 109.46878 * 30.00310 * 1 2 3 25 25 H 1.09000 * 109.47222 * 150.00786 * 1 2 3 26 26 H 1.08001 * 119.99977 * 6.92237 * 3 2 1 27 27 H 1.08005 * 120.04355 * 359.97438 * 5 4 3 28 28 H 1.08003 * 119.85076 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.81812 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.96638 * 180.02562 * 8 7 6 31 31 H 0.97007 * 120.00065 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.47526 * 59.99701 * 21 19 2 33 33 H 1.09000 * 109.47573 * 180.02562 * 21 19 2 34 34 H 1.09005 * 109.47194 * 299.99571 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1704 1.1489 0.0000 4 6 3.6391 1.1536 -0.1544 5 6 4.2491 0.3126 -1.0853 6 6 5.6215 0.3210 -1.2247 7 6 6.3979 1.1607 -0.4440 8 6 5.8068 1.9976 0.4822 9 6 4.4274 2.0062 0.6307 10 8 3.8447 2.8322 1.5351 11 6 4.6662 3.5362 2.3394 12 1 5.7351 3.4908 2.1922 13 6 4.1388 4.3184 3.3554 14 7 2.8367 4.3740 3.5343 15 14 5.2772 5.2943 4.4694 16 1 6.0677 6.2509 3.6538 17 1 4.4713 6.0423 5.4677 18 1 6.1975 4.3653 5.1729 19 6 2.2605 -1.3051 0.0006 20 1 3.3287 -1.1079 0.0918 21 6 1.9895 -2.0510 -1.3074 22 17 1.7146 -2.3137 1.3919 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5137 26 1 1.6363 2.0809 0.1127 27 1 3.6477 -0.3450 -1.6956 28 1 6.0926 -0.3309 -1.9455 29 1 7.4717 1.1612 -0.5598 30 1 6.4185 2.6502 1.0875 31 1 2.4677 4.9210 4.2454 32 1 2.3195 -1.4413 -2.1486 33 1 2.5341 -2.9952 -1.3069 34 1 0.9213 -2.2483 -1.3986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309515035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:29 Heat of formation + Delta-G solvation = -7.901809 kcal Electronic energy + Delta-G solvation = -17805.787272 eV Core-core repulsion = 14923.209831 eV Total energy + Delta-G solvation = -2882.577441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.35450 -37.27723 -36.04797 -34.80653 -32.39767 -31.04167 -30.26105 -28.89599 -26.25798 -25.33458 -23.47473 -21.63085 -21.09411 -18.11045 -17.98636 -16.83251 -15.49171 -15.22461 -14.60688 -14.33873 -14.11306 -13.88849 -13.55405 -13.45767 -12.74200 -12.57726 -12.42829 -12.22763 -11.89578 -11.74236 -11.48731 -11.26932 -11.15389 -10.93022 -10.77754 -10.66564 -10.49359 -10.05154 -9.93634 -9.41220 -9.00320 -8.84045 -7.85562 -7.13649 -6.51918 -4.10088 1.64891 2.23054 2.47984 3.09475 3.11196 3.13640 3.15702 3.90940 4.49963 4.88330 5.00846 5.07529 5.17836 5.24091 5.38704 5.48697 5.67028 5.70395 5.79740 5.90492 5.99458 6.01644 6.07261 6.19260 6.20372 6.39340 6.60014 6.76974 6.88414 6.95473 7.12783 7.25000 7.29146 7.39689 7.72088 7.91952 8.93038 9.60856 10.65111 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.006185 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.560277 B = 4526.094170 C = 5322.778607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.174 4.174 3 C -0.041 4.041 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.217 4.217 7 C -0.068 4.068 8 C -0.233 4.233 9 C 0.166 3.834 10 O -0.164 6.164 11 C -0.395 4.395 12 H 0.092 0.908 13 C 0.043 3.957 14 N -0.856 5.856 15 Si 0.941 3.059 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.037 3.963 20 H 0.118 0.882 21 C -0.154 4.154 22 Cl -0.198 7.198 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.272 0.728 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 -8.326 -7.736 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.175 4.175 3 C -0.059 4.059 4 C -0.151 4.151 5 C -0.091 4.091 6 C -0.236 4.236 7 C -0.086 4.086 8 C -0.253 4.253 9 C 0.111 3.889 10 O -0.066 6.066 11 C -0.471 4.471 12 H 0.110 0.890 13 C -0.163 4.163 14 N -0.490 5.490 15 Si 0.765 3.235 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.194 1.194 19 C -0.006 4.006 20 H 0.136 0.864 21 C -0.211 4.211 22 Cl -0.172 7.172 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.503 -8.217 -7.398 11.068 hybrid contribution 0.704 0.537 0.712 1.137 sum 0.201 -7.680 -6.686 10.184 Atomic orbital electron populations 1.20617 0.91629 1.01558 1.02068 1.21592 0.95611 0.92686 1.07575 1.21428 0.92122 0.97410 0.94984 1.18127 0.92553 1.01757 1.02701 1.21006 0.94653 0.96743 0.96672 1.20523 0.93626 1.04781 1.04656 1.20836 0.98600 0.94716 0.94468 1.21149 0.94704 1.05237 1.04171 1.19411 0.90920 0.88735 0.89831 1.83931 1.35075 1.47140 1.40473 1.21308 0.90224 1.24874 1.10735 0.89025 1.25291 0.96668 0.97389 0.96929 1.70024 1.10673 1.37395 1.30877 0.85783 0.79092 0.79324 0.79281 1.19437 1.20188 1.19421 1.23366 1.01153 0.89654 0.86386 0.86422 1.22176 1.02978 1.00380 0.95610 1.98698 1.92481 1.73688 1.52337 0.91679 0.92034 0.92340 0.85884 0.86400 0.87425 0.87393 0.85364 0.91822 0.90766 0.91682 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.58 36.01 0.35 -1.11 16 2 C -0.17 -2.87 4.87 -101.24 -0.49 -3.36 16 3 C -0.04 -0.79 8.92 -37.62 -0.34 -1.13 16 4 C -0.15 -3.07 5.07 -104.85 -0.53 -3.60 16 5 C -0.07 -1.25 7.32 -39.21 -0.29 -1.54 16 6 C -0.22 -3.60 10.03 -39.60 -0.40 -4.00 16 7 C -0.07 -1.21 10.03 -39.54 -0.40 -1.61 16 8 C -0.23 -4.95 9.16 -39.44 -0.36 -5.32 16 9 C 0.17 3.92 6.66 -38.67 -0.26 3.66 16 10 O -0.16 -4.53 9.21 0.45 0.00 -4.53 16 11 C -0.40 -10.80 9.49 30.88 0.29 -10.51 16 12 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 13 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 14 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 15 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.04 0.56 2.64 -27.88 -0.07 0.49 16 20 H 0.12 1.96 4.80 -51.93 -0.25 1.71 16 21 C -0.15 -1.80 8.75 37.15 0.33 -1.47 16 22 Cl -0.20 -3.18 28.24 -51.86 -1.46 -4.64 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.06 0.72 6.92 -51.93 -0.36 0.36 16 26 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 27 H 0.12 1.70 4.72 -52.48 -0.25 1.46 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.07 0.80 6.45 -51.93 -0.34 0.46 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.73 7.02 -51.93 -0.36 0.37 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -29.10 297.59 -7.30 -36.40 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.79 Total: 5.37 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.27 Total: -28.43 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.76 Total: -23.81 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -1.46 Total: -4.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.10 -7.30 -36.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309515035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.501 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds