Wall clock time and date at job start Mon Mar 30 2020 07:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32671 * 119.99981 * 2 1 4 4 C 1.47676 * 119.99870 * 7.23341 * 3 2 1 5 5 C 1.39496 * 120.18529 * 36.08372 * 4 3 2 6 6 C 1.37951 * 119.92820 * 180.02562 * 5 4 3 7 7 C 1.38483 * 120.29356 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.36728 * 0.02562 * 7 6 5 9 9 C 1.38732 * 120.06656 * 359.67043 * 8 7 6 10 10 O 1.35644 * 120.14607 * 180.32499 * 9 8 7 11 11 C 1.34818 * 116.99788 * 354.17612 * 10 9 8 12 12 H 1.07992 * 120.00097 * 5.07726 * 11 10 9 13 13 C 1.38648 * 119.99734 * 185.07887 * 11 10 9 14 14 N 1.31558 * 120.00480 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99947 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46862 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47529 * 119.99710 * 15 13 11 18 18 H 1.48499 * 109.46684 * 239.99985 * 15 13 11 19 19 C 1.50699 * 120.00157 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47321 * 49.99259 * 19 2 1 21 21 C 1.53006 * 109.46934 * 289.99544 * 19 2 1 22 22 Cl 1.80305 * 109.47306 * 169.99823 * 19 2 1 23 23 H 1.09001 * 109.46580 * 266.07956 * 1 2 3 24 24 H 1.08998 * 109.47424 * 26.07778 * 1 2 3 25 25 H 1.08994 * 109.47053 * 146.08288 * 1 2 3 26 26 H 1.08005 * 119.99986 * 187.22423 * 3 2 1 27 27 H 1.08001 * 120.03826 * 0.02859 * 5 4 3 28 28 H 1.08004 * 119.85552 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.81532 * 179.97438 * 7 6 5 30 30 H 1.08003 * 119.96101 * 180.02562 * 8 7 6 31 31 H 0.96989 * 120.00467 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.46843 * 60.00029 * 21 19 2 33 33 H 1.09002 * 109.47255 * 179.97438 * 21 19 2 34 34 H 1.09004 * 109.47176 * 300.00020 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1704 1.1490 0.0000 4 6 1.4408 2.4228 0.1610 5 6 0.3311 2.4938 1.0034 6 6 -0.3468 3.6864 1.1495 7 6 0.0688 4.8148 0.4628 8 6 1.1653 4.7580 -0.3752 9 6 1.8620 3.5681 -0.5285 10 8 2.9429 3.5121 -1.3460 11 6 3.2175 4.6131 -2.0739 12 1 2.6388 5.5135 -1.9303 13 6 4.2429 4.5895 -3.0068 14 7 4.9483 3.4928 -3.1814 15 14 4.6239 6.1153 -4.0149 16 1 3.6936 7.2073 -3.6308 17 1 6.0225 6.5424 -3.7571 18 1 4.4578 5.8089 -5.4584 19 6 2.2605 -1.3051 -0.0006 20 1 1.8701 -1.9497 -0.7880 21 6 2.0884 -1.9940 1.3547 22 17 4.0109 -0.9884 -0.2957 23 1 -0.3632 -0.0703 1.0253 24 1 -0.3634 0.9230 -0.4517 25 1 -0.3633 -0.8528 -0.5734 26 1 3.2440 1.1527 -0.1176 27 1 0.0031 1.6163 1.5407 28 1 -1.2060 3.7400 1.8017 29 1 -0.4679 5.7443 0.5826 30 1 1.4839 5.6422 -0.9073 31 1 5.6659 3.4763 -3.8337 32 1 1.0303 -2.1854 1.5331 33 1 2.6330 -2.9382 1.3542 34 1 2.4788 -1.3493 2.1422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309515037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:36 Heat of formation + Delta-G solvation = -22.199935 kcal Electronic energy + Delta-G solvation = -17716.754738 eV Core-core repulsion = 14833.557283 eV Total energy + Delta-G solvation = -2883.197455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87234 -38.68488 -37.64567 -36.07722 -34.30436 -32.94104 -30.70623 -30.18672 -28.06730 -27.32143 -24.66672 -23.20362 -22.33876 -19.81286 -19.42198 -18.36021 -16.83773 -16.63776 -16.36854 -15.93806 -15.65449 -15.43786 -15.13283 -14.89790 -14.31933 -13.74394 -13.66659 -13.57106 -13.45068 -12.95469 -12.85087 -12.62316 -12.45182 -12.37058 -12.18510 -12.09065 -11.84915 -11.42974 -11.24616 -11.09829 -10.81326 -10.36478 -9.30421 -8.67004 -8.46061 -6.13282 0.25228 0.76807 1.32743 1.34631 1.41542 1.50950 1.55440 2.16254 2.87068 3.22526 3.51954 3.60292 4.02227 4.09046 4.18316 4.23878 4.30450 4.39204 4.62807 4.71073 4.77036 4.84783 4.88030 4.94334 5.11938 5.12453 5.20883 5.25168 5.36635 5.55985 5.64204 5.77885 5.82857 5.94110 6.09647 6.27555 6.97858 7.80961 8.76211 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.007011 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.638658 B = 3992.754909 C = 5520.877713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.156 4.156 3 C -0.100 4.100 4 C -0.147 4.147 5 C -0.060 4.060 6 C -0.194 4.194 7 C -0.071 4.071 8 C -0.253 4.253 9 C 0.118 3.882 10 O -0.219 6.219 11 C -0.415 4.415 12 H 0.099 0.901 13 C -0.021 4.021 14 N -0.914 5.914 15 Si 1.016 2.984 16 H -0.252 1.252 17 H -0.269 1.269 18 H -0.269 1.269 19 C 0.041 3.959 20 H 0.119 0.881 21 C -0.142 4.142 22 Cl -0.209 7.209 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.271 0.729 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.975 -7.003 8.341 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.213 4.213 7 C -0.089 4.089 8 C -0.272 4.272 9 C 0.067 3.933 10 O -0.125 6.125 11 C -0.491 4.491 12 H 0.117 0.883 13 C -0.219 4.219 14 N -0.552 5.552 15 Si 0.836 3.164 16 H -0.175 1.175 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.002 4.002 20 H 0.137 0.863 21 C -0.199 4.199 22 Cl -0.183 7.183 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.513 -7.235 8.156 15.145 hybrid contribution 1.072 0.933 -0.913 1.689 sum -9.441 -6.302 7.244 13.465 Atomic orbital electron populations 1.20977 0.88851 1.02884 1.03343 1.22038 0.97166 0.92379 1.04047 1.21582 0.99125 0.91623 0.99489 1.18535 1.00364 0.91639 1.04253 1.21442 0.91960 0.99153 0.95236 1.21145 1.03296 0.92434 1.04390 1.21234 0.94169 0.99672 0.93843 1.21257 1.01431 0.97590 1.06955 1.20136 0.87326 0.94596 0.91264 1.83932 1.39362 1.39439 1.49785 1.21849 1.18488 0.90600 1.18166 0.88330 1.26547 0.95146 1.02281 0.97920 1.70215 1.20827 1.29352 1.34785 0.84564 0.78809 0.75748 0.77293 1.17484 1.19422 1.19365 1.23188 0.78516 0.95931 1.02559 0.86315 1.22065 1.04649 1.00418 0.92746 1.98738 1.25736 1.96609 1.97235 0.88736 0.92378 0.90268 0.88678 0.82689 0.82836 0.83951 0.86717 0.92025 0.87988 0.90243 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 8.06 71.24 0.57 -1.86 16 2 C -0.16 -4.85 5.27 -17.62 -0.09 -4.94 16 3 C -0.10 -4.18 8.56 23.60 0.20 -3.97 16 4 C -0.15 -6.29 5.15 -20.01 -0.10 -6.39 16 5 C -0.06 -1.96 7.61 22.51 0.17 -1.79 16 6 C -0.19 -5.77 10.03 22.26 0.22 -5.55 16 7 C -0.07 -2.43 10.03 22.30 0.22 -2.20 16 8 C -0.25 -11.27 9.16 22.36 0.20 -11.07 16 9 C 0.12 6.02 6.65 22.86 0.15 6.17 16 10 O -0.22 -13.49 9.21 -21.45 -0.20 -13.69 16 11 C -0.41 -24.76 9.49 67.92 0.64 -24.11 16 12 H 0.10 5.44 5.21 -2.91 -0.02 5.42 16 13 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 14 N -0.91 -57.50 13.67 21.61 0.30 -57.20 16 15 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 16 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 19 C 0.04 1.09 3.68 29.85 0.11 1.20 16 20 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 21 C -0.14 -2.66 9.24 71.98 0.67 -1.99 16 22 Cl -0.21 -7.47 26.29 -2.72 -0.07 -7.54 16 23 H 0.09 1.63 6.95 -2.39 -0.02 1.61 16 24 H 0.06 1.63 6.02 -2.39 -0.01 1.61 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 4.70 6.01 -2.91 -0.02 4.68 16 27 H 0.16 3.83 5.58 -2.91 -0.02 3.82 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 31 H 0.27 15.64 8.31 -92.72 -0.77 14.87 16 32 H 0.10 1.34 8.04 -2.39 -0.02 1.32 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -74.42 298.90 6.60 -67.81 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.11 Total: 21.80 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 3.44 Total: -57.27 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.30 Total: -57.20 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.20 Total: -13.69 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 17 Polarization: -7.47 SS G_CDS: -0.07 Total: -7.54 kcal Total: -74.42 6.60 -67.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309515037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.614 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds