Wall clock time and date at job start Mon Mar 30 2020 08:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47156 * 239.99675 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47100 * 119.99828 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46498 * 110.75336 * 156.31761 * 13 12 11 16 16 C 1.39067 * 119.99388 * 86.46317 * 15 13 12 17 17 C 1.39118 * 119.69351 * 359.72034 * 16 15 13 18 18 C 1.38304 * 119.10761 * 179.73656 * 17 16 15 19 19 C 1.38967 * 118.49734 * 0.52595 * 18 17 16 20 20 Cl 1.73598 * 120.35120 * 179.75166 * 19 18 17 21 21 C 1.38129 * 119.30331 * 359.73897 * 19 18 17 22 22 N 1.31978 * 120.83700 * 359.97438 * 21 19 18 23 23 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 24 24 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 26 26 H 1.08996 * 110.07773 * 359.97438 * 11 9 7 27 27 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 28 28 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 29 29 H 0.97002 * 120.00493 * 266.45577 * 15 13 12 30 30 H 1.07999 * 120.44834 * 0.02562 * 17 16 15 31 31 H 1.08008 * 120.75090 * 180.26632 * 18 17 16 32 32 H 1.08001 * 119.57768 * 179.97438 * 21 19 18 33 33 H 1.09005 * 110.48526 * 261.59666 * 23 9 7 34 34 H 1.09006 * 110.48581 * 24.23858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5293 -5.6447 1.5331 16 6 2.1237 -6.8789 2.0293 17 6 0.7817 -7.2399 1.9655 18 6 0.3925 -8.4725 2.4575 19 6 1.3612 -9.3020 3.0095 20 17 0.9250 -10.8566 3.6471 21 6 2.6749 -8.8767 3.0452 22 7 3.0174 -7.6971 2.5625 23 6 2.2406 -3.6821 0.0354 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6603 -2.7304 0.9997 26 1 0.5152 -1.7203 1.8871 27 1 1.6154 -3.5742 2.7902 28 1 0.0463 -4.3825 2.4891 29 1 3.4633 -5.3868 1.5789 30 1 0.0543 -6.5688 1.5333 31 1 -0.6417 -8.7816 2.4175 32 1 3.4313 -9.5177 3.4735 33 1 2.3919 -4.0825 -0.9670 34 1 3.1905 -3.3719 0.4708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336189272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:49 Heat of formation + Delta-G solvation = 15.830340 kcal Electronic energy + Delta-G solvation = -17325.361050 eV Core-core repulsion = 14476.105464 eV Total energy + Delta-G solvation = -2849.255587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.28009 -37.85481 -36.55680 -34.46569 -32.51298 -32.11605 -29.43544 -28.25439 -26.64922 -24.24479 -23.53420 -22.37431 -19.98632 -19.15267 -17.75349 -16.94170 -16.41394 -15.92251 -15.14487 -14.74714 -14.47332 -14.33526 -14.08071 -13.19710 -12.90281 -12.70347 -12.36553 -12.25642 -11.82951 -11.25610 -11.19211 -11.01653 -10.89025 -10.60685 -10.43699 -10.19612 -9.87089 -9.77499 -9.60890 -9.53547 -9.32526 -8.79627 -8.42134 -7.54769 -6.06806 -4.10507 1.16047 1.26054 2.12333 3.27905 3.28356 3.33509 3.36131 3.78765 4.39284 4.54571 4.74746 4.95584 5.07938 5.21234 5.32296 5.46435 5.61311 5.70509 5.84882 5.90064 6.12075 6.29893 6.39325 6.42071 6.53744 6.59915 6.82744 7.03401 7.19844 7.25070 7.63146 7.68104 7.83400 7.90703 8.13847 8.38049 8.92123 9.53822 11.02234 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.059836 B = 0.003412 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.837046 B = 8204.558940 C = 8455.894809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.030 0.970 11 C -0.091 4.091 12 C -0.137 4.137 13 C 0.137 3.863 14 H 0.082 0.918 15 N -0.703 5.703 16 C 0.415 3.585 17 C -0.228 4.228 18 C -0.023 4.023 19 C -0.164 4.164 20 Cl -0.077 7.077 21 C 0.167 3.833 22 N -0.540 5.540 23 C -0.116 4.116 24 H 0.261 0.739 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.405 0.595 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.052 0.948 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -16.320 5.022 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.048 0.952 11 C -0.130 4.130 12 C -0.176 4.176 13 C 0.033 3.967 14 H 0.100 0.900 15 N -0.331 5.331 16 C 0.177 3.823 17 C -0.254 4.254 18 C -0.049 4.049 19 C -0.196 4.196 20 Cl -0.048 7.048 21 C 0.008 3.992 22 N -0.258 5.258 23 C -0.154 4.154 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.241 0.759 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.176 0.824 33 H 0.071 0.929 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.438 -15.882 4.990 16.709 hybrid contribution -0.166 0.670 0.109 0.699 sum 1.273 -15.211 5.099 16.094 Atomic orbital electron populations 1.69964 1.05846 1.26677 1.50154 1.24975 0.94858 0.99050 0.95142 0.86700 0.79644 0.83286 0.78623 1.20299 1.21322 1.20292 1.21179 0.92706 0.90390 1.51130 0.92708 1.19192 0.92223 0.91393 0.94217 0.95213 1.22037 0.98121 0.94655 0.98140 1.22898 0.99188 0.97751 0.97741 1.22405 0.90470 0.89193 0.94639 0.90013 1.44977 1.11719 1.13693 1.62662 1.18585 0.89002 0.86480 0.88200 1.21511 0.95941 0.98759 1.09172 1.21208 0.99278 0.91877 0.92532 1.21563 0.96071 0.90701 1.11274 1.98333 1.93318 1.27357 1.85832 1.22310 0.92954 0.91149 0.92818 1.67364 1.36560 1.04934 1.16932 1.22802 1.00233 0.95469 0.96919 0.92950 0.94063 0.91433 0.92127 0.93313 0.75913 0.83947 0.84290 0.82363 0.92927 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 12.33 55.43 0.68 -23.96 16 2 C 0.06 1.65 5.07 -17.81 -0.09 1.56 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.46 8.34 -34.44 -0.29 -13.74 16 8 H 0.05 1.41 7.55 -52.49 -0.40 1.02 16 9 C 0.05 1.12 2.84 -90.66 -0.26 0.86 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.09 -1.97 5.55 -25.62 -0.14 -2.11 16 12 C -0.14 -2.40 6.50 -25.07 -0.16 -2.56 16 13 C 0.14 2.19 2.80 -65.75 -0.18 2.01 16 14 H 0.08 1.24 6.66 -51.93 -0.35 0.89 16 15 N -0.70 -10.33 5.39 -51.81 -0.28 -10.61 16 16 C 0.41 6.00 7.65 -154.98 -1.19 4.82 16 17 C -0.23 -2.97 9.24 -39.23 -0.36 -3.33 16 18 C -0.02 -0.26 9.97 -39.29 -0.39 -0.65 16 19 C -0.16 -1.90 6.34 -39.35 -0.25 -2.15 16 20 Cl -0.08 -0.78 28.98 -51.86 -1.50 -2.29 16 21 C 0.17 2.03 10.97 -17.53 -0.19 1.84 16 22 N -0.54 -7.72 10.39 -12.40 -0.13 -7.85 16 23 C -0.12 -2.15 5.97 -24.88 -0.15 -2.30 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.66 7.17 -51.93 -0.37 1.29 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.40 5.77 8.66 -40.82 -0.35 5.42 16 30 H 0.14 1.76 6.24 -52.49 -0.33 1.44 16 31 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.21 7.57 -51.93 -0.39 0.81 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -27.12 298.15 -9.69 -36.81 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.28 Total: 3.49 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.66 Total: -15.77 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.28 Total: -42.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.12 -9.69 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.638 kcal (2) G-P(sol) polarization free energy of solvation -27.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds