Wall clock time and date at job start Mon Mar 30 2020 08:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47156 * 239.99675 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47100 * 119.99828 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46498 * 110.75336 * 156.31761 * 13 12 11 16 16 C 1.39067 * 119.99388 * 86.46317 * 15 13 12 17 17 C 1.39118 * 119.69351 * 359.72034 * 16 15 13 18 18 C 1.38304 * 119.10761 * 179.73656 * 17 16 15 19 19 C 1.38967 * 118.49734 * 0.52595 * 18 17 16 20 20 Cl 1.73598 * 120.35120 * 179.75166 * 19 18 17 21 21 C 1.38129 * 119.30331 * 359.73897 * 19 18 17 22 22 N 1.31978 * 120.83700 * 359.97438 * 21 19 18 23 23 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 24 24 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 26 26 H 1.08996 * 110.07773 * 359.97438 * 11 9 7 27 27 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 28 28 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 29 29 H 0.97002 * 120.00493 * 266.45577 * 15 13 12 30 30 H 1.07999 * 120.44834 * 0.02562 * 17 16 15 31 31 H 1.08008 * 120.75090 * 180.26632 * 18 17 16 32 32 H 1.08001 * 119.57768 * 179.97438 * 21 19 18 33 33 H 1.09005 * 110.48526 * 261.59666 * 23 9 7 34 34 H 1.09006 * 110.48581 * 24.23858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5293 -5.6447 1.5331 16 6 2.1237 -6.8789 2.0293 17 6 0.7817 -7.2399 1.9655 18 6 0.3925 -8.4725 2.4575 19 6 1.3612 -9.3020 3.0095 20 17 0.9250 -10.8566 3.6471 21 6 2.6749 -8.8767 3.0452 22 7 3.0174 -7.6971 2.5625 23 6 2.2406 -3.6821 0.0354 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6603 -2.7304 0.9997 26 1 0.5152 -1.7203 1.8871 27 1 1.6154 -3.5742 2.7902 28 1 0.0463 -4.3825 2.4891 29 1 3.4633 -5.3868 1.5789 30 1 0.0543 -6.5688 1.5333 31 1 -0.6417 -8.7816 2.4175 32 1 3.4313 -9.5177 3.4735 33 1 2.3919 -4.0825 -0.9670 34 1 3.1905 -3.3719 0.4708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336189272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:47 Heat of formation + Delta-G solvation = 1.892653 kcal Electronic energy + Delta-G solvation = -17325.965434 eV Core-core repulsion = 14476.105464 eV Total energy + Delta-G solvation = -2849.859970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -41.29135 -39.27761 -37.46710 -35.85887 -34.04493 -33.35451 -30.60289 -29.91744 -28.12677 -25.88344 -24.68569 -23.45942 -21.34145 -20.89458 -18.85224 -18.32110 -17.80711 -17.09197 -16.56284 -16.45976 -15.78561 -15.48569 -15.25590 -14.46765 -14.20227 -14.08066 -13.68526 -13.49350 -13.23307 -12.93608 -12.64524 -12.44409 -12.34777 -12.13352 -12.08067 -11.71684 -11.54696 -11.11614 -10.80613 -10.77104 -10.71441 -10.51042 -10.42947 -8.61160 -8.11232 -6.20352 0.20438 0.31200 1.23107 1.42598 1.42778 1.50157 2.16114 2.44437 2.80455 3.20038 3.60896 3.86054 3.88824 3.97081 4.04156 4.11843 4.26167 4.64176 4.74195 4.79082 4.86406 4.94825 4.98959 5.00607 5.10191 5.15453 5.35919 5.45898 5.52838 5.68307 5.93736 5.94618 6.06309 6.40692 6.59050 6.91382 7.10637 7.46869 8.96978 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.059836 B = 0.003412 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.837046 B = 8204.558940 C = 8455.894809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.039 3.961 10 H 0.002 0.998 11 C -0.082 4.082 12 C -0.125 4.125 13 C 0.159 3.841 14 H 0.096 0.904 15 N -0.705 5.705 16 C 0.398 3.602 17 C -0.236 4.236 18 C -0.020 4.020 19 C -0.162 4.162 20 Cl -0.062 7.062 21 C 0.160 3.840 22 N -0.557 5.557 23 C -0.107 4.107 24 H 0.260 0.740 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.406 0.594 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.062 0.938 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 -17.990 5.630 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.020 0.980 11 C -0.121 4.121 12 C -0.164 4.164 13 C 0.054 3.946 14 H 0.114 0.886 15 N -0.334 5.334 16 C 0.162 3.838 17 C -0.261 4.261 18 C -0.046 4.046 19 C -0.194 4.194 20 Cl -0.033 7.033 21 C 0.001 3.999 22 N -0.276 5.276 23 C -0.145 4.145 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.242 0.758 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.198 0.802 33 H 0.081 0.919 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.789 -17.586 5.609 18.546 hybrid contribution -0.291 1.075 -0.049 1.115 sum 1.498 -16.511 5.561 17.487 Atomic orbital electron populations 1.70081 1.07085 1.27185 1.51289 1.25705 0.95628 1.02220 0.95110 0.85765 0.78478 0.79571 0.78775 1.19719 1.21228 1.19787 1.21595 0.92935 0.91960 1.50413 0.92855 1.19185 0.92906 0.92277 0.93593 0.98008 1.21803 0.97504 0.95319 0.97485 1.22756 0.99814 0.96171 0.97624 1.22024 0.90434 0.88772 0.93396 0.88606 1.44724 1.11331 1.13898 1.63482 1.18720 0.89716 0.86391 0.88971 1.21633 0.95450 0.99540 1.09493 1.21501 1.00481 0.91178 0.91422 1.21678 0.95999 0.91238 1.10465 1.98345 1.93180 1.26262 1.85557 1.22699 0.93930 0.90763 0.92470 1.67337 1.37112 1.05727 1.17418 1.22600 0.99017 0.94621 0.98302 0.93158 0.95024 0.94955 0.92628 0.91224 0.75824 0.83385 0.81926 0.80235 0.91928 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 12.33 21.45 0.26 -51.90 16 2 C 0.01 0.67 5.07 84.65 0.43 1.10 16 3 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -28.18 8.34 25.60 0.21 -27.96 16 8 H 0.05 2.77 7.55 -2.91 -0.02 2.75 16 9 C 0.04 1.85 2.84 -10.82 -0.03 1.82 16 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 11 C -0.08 -3.64 5.55 31.32 0.17 -3.47 16 12 C -0.12 -4.26 6.50 31.67 0.21 -4.05 16 13 C 0.16 4.86 2.80 46.41 0.13 4.99 16 14 H 0.10 2.71 6.66 -2.39 -0.02 2.69 16 15 N -0.71 -19.66 5.39 -317.84 -1.71 -21.38 16 16 C 0.40 10.78 7.65 133.04 1.02 11.79 16 17 C -0.24 -5.57 9.24 22.50 0.21 -5.36 16 18 C -0.02 -0.40 9.97 22.46 0.22 -0.18 16 19 C -0.16 -3.31 6.34 22.42 0.14 -3.17 16 20 Cl -0.06 -1.09 28.98 -2.72 -0.08 -1.17 16 21 C 0.16 3.52 10.97 84.64 0.93 4.45 16 22 N -0.56 -14.94 10.39 -193.15 -2.01 -16.94 16 23 C -0.11 -3.93 5.97 31.79 0.19 -3.74 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 1.62 7.17 -2.39 -0.02 1.61 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 29 H 0.41 11.08 8.66 -92.71 -0.80 10.28 16 30 H 0.15 3.28 6.24 -2.91 -0.02 3.26 16 31 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 2.29 7.57 -2.38 -0.02 2.27 16 Total: -1.00 -58.37 298.15 2.64 -55.73 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.31 Total: 14.52 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.83 Total: -23.79 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -3.45 Total: -90.22 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -58.37 2.64 -55.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.622 kcal (2) G-P(sol) polarization free energy of solvation -58.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds