Wall clock time and date at job start Mon Mar 30 2020 08:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47242 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47098 * 60.00042 * 3 2 1 7 7 C 1.37878 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99705 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.01923 * 301.38733 * 9 7 2 11 11 C 1.54261 * 110.03593 * 62.83276 * 9 7 2 12 12 C 1.54888 * 104.19672 * 142.89104 * 11 9 7 13 13 C 1.54891 * 102.75120 * 322.06034 * 12 11 9 14 14 H 1.09004 * 110.48613 * 279.26383 * 13 12 11 15 15 N 1.46497 * 110.48883 * 156.61810 * 13 12 11 16 16 C 1.39069 * 119.99819 * 90.22278 * 15 13 12 17 17 C 1.39122 * 119.69362 * 0.02562 * 16 15 13 18 18 C 1.38300 * 119.11001 * 179.97438 * 17 16 15 19 19 C 1.38968 * 118.49659 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.34801 * 180.02562 * 19 18 17 21 21 C 1.38124 * 119.30385 * 0.02562 * 19 18 17 22 22 N 1.31977 * 120.83799 * 359.73699 * 21 19 18 23 23 C 1.53876 * 110.03013 * 180.02562 * 9 7 2 24 24 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48928 * 261.57113 * 11 9 7 26 26 H 1.08999 * 110.48469 * 24.21522 * 11 9 7 27 27 H 1.09005 * 110.75648 * 80.37263 * 12 11 9 28 28 H 1.09004 * 110.75897 * 203.55715 * 12 11 9 29 29 H 0.96995 * 120.00065 * 270.22910 * 15 13 12 30 30 H 1.08005 * 120.44431 * 0.02562 * 17 16 15 31 31 H 1.08000 * 120.75055 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.58282 * 180.02562 * 21 19 18 33 33 H 1.08995 * 110.03160 * 359.97438 * 23 9 7 34 34 H 1.08998 * 110.03319 * 121.42692 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 1 0.6021 -2.5561 0.8723 11 6 0.4141 -2.6251 -1.2915 12 6 0.5057 -4.1270 -1.6586 13 6 1.9687 -4.4799 -1.2921 14 1 2.6470 -4.1661 -2.0856 15 7 2.1019 -5.9170 -1.0405 16 6 2.4177 -6.7794 -2.0847 17 6 2.6063 -6.2705 -3.3657 18 6 2.9205 -7.1390 -4.3951 19 6 3.0357 -8.4938 -4.1078 20 17 3.4289 -9.6263 -5.3633 21 6 2.8339 -8.9297 -2.8128 22 7 2.5396 -8.0765 -1.8499 23 6 2.2393 -3.6785 -0.0015 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6213 -2.3407 -1.1038 26 1 0.8414 -2.0117 -2.0848 27 1 -0.1939 -4.7136 -1.0631 28 1 0.3243 -4.2763 -2.7230 29 1 1.9697 -6.2669 -0.1455 30 1 2.5095 -5.2114 -3.5536 31 1 3.0722 -6.7727 -5.3998 32 1 2.9226 -9.9816 -2.5844 33 1 3.2640 -3.3069 -0.0010 34 1 2.0693 -4.3080 0.8719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378856810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:37 Heat of formation + Delta-G solvation = 16.422436 kcal Electronic energy + Delta-G solvation = -17336.443806 eV Core-core repulsion = 14487.213895 eV Total energy + Delta-G solvation = -2849.229912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27976 -37.88094 -36.55241 -34.44236 -32.50309 -32.12096 -29.43052 -28.29478 -26.61733 -24.28218 -23.50876 -22.36774 -19.90423 -19.16710 -17.83031 -16.87360 -16.52930 -16.15897 -14.95744 -14.72565 -14.47883 -14.45557 -13.57551 -13.19128 -13.05508 -12.68295 -12.45451 -12.17939 -11.97644 -11.24934 -11.17472 -11.15325 -10.85779 -10.61316 -10.27891 -10.20435 -9.86669 -9.70903 -9.65826 -9.52238 -9.35381 -8.81658 -8.43781 -7.54025 -6.07122 -4.10364 1.16530 1.26628 2.12813 3.25531 3.29160 3.34432 3.37659 3.79222 4.39130 4.54755 4.75418 4.96143 5.09666 5.20479 5.34559 5.46749 5.61767 5.74056 5.85750 5.90735 6.15311 6.24560 6.37221 6.47005 6.50296 6.60898 6.84486 7.06278 7.14698 7.27441 7.63874 7.67515 7.78252 7.93417 8.13945 8.36835 8.92775 9.54240 11.02232 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.003524 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.404203 B = 7943.461852 C = 8130.378027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.047 3.953 10 H 0.030 0.970 11 C -0.091 4.091 12 C -0.142 4.142 13 C 0.143 3.857 14 H 0.084 0.916 15 N -0.704 5.704 16 C 0.415 3.585 17 C -0.228 4.228 18 C -0.023 4.023 19 C -0.164 4.164 20 Cl -0.077 7.077 21 C 0.167 3.833 22 N -0.540 5.540 23 C -0.118 4.118 24 H 0.259 0.741 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.404 0.596 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -14.556 -7.587 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.028 3.972 10 H 0.049 0.951 11 C -0.130 4.130 12 C -0.181 4.181 13 C 0.038 3.962 14 H 0.102 0.898 15 N -0.332 5.332 16 C 0.177 3.823 17 C -0.254 4.254 18 C -0.049 4.049 19 C -0.196 4.196 20 Cl -0.048 7.048 21 C 0.007 3.993 22 N -0.258 5.258 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.240 0.760 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.999 -14.571 -6.859 16.594 hybrid contribution 0.495 1.041 -0.656 1.326 sum 4.494 -13.530 -7.515 16.116 Atomic orbital electron populations 1.69973 1.05876 1.26434 1.50364 1.24991 0.94847 0.99086 0.95088 0.86591 0.80180 0.83979 0.77589 1.19793 1.21044 1.21080 1.21306 0.92719 0.90433 1.50946 0.92537 1.19216 0.92293 0.91346 0.94360 0.95142 1.22269 1.01134 0.90173 0.99428 1.23078 0.95270 1.00097 0.99641 1.22209 0.97460 0.76637 0.99859 0.89779 1.45108 1.73233 1.06063 1.08831 1.18595 0.88362 0.87491 0.87847 1.21532 1.10289 1.01681 0.91883 1.21211 0.93149 0.90784 0.99742 1.21562 1.15185 0.91553 0.91297 1.98333 1.93070 1.60980 1.52465 1.22304 0.91675 0.99041 0.86237 1.67362 1.21392 1.02043 1.35040 1.22579 1.01876 0.97449 0.93707 0.93080 0.92143 0.92603 0.92236 0.93053 0.76045 0.83873 0.84283 0.82374 0.91767 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 12.43 55.43 0.69 -23.93 16 2 C 0.06 1.65 5.33 -17.82 -0.09 1.55 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.38 8.36 -34.44 -0.29 -13.67 16 8 H 0.06 1.45 7.33 -52.49 -0.38 1.07 16 9 C 0.05 1.08 2.81 -90.65 -0.26 0.82 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.09 -1.97 5.44 -25.08 -0.14 -2.10 16 12 C -0.14 -2.45 6.58 -24.74 -0.16 -2.61 16 13 C 0.14 2.30 2.91 -66.24 -0.19 2.11 16 14 H 0.08 1.33 6.37 -51.93 -0.33 1.00 16 15 N -0.70 -10.31 5.33 -52.29 -0.28 -10.59 16 16 C 0.41 6.01 7.65 -154.97 -1.19 4.83 16 17 C -0.23 -3.01 9.24 -39.23 -0.36 -3.37 16 18 C -0.02 -0.27 9.97 -39.29 -0.39 -0.66 16 19 C -0.16 -1.91 6.34 -39.35 -0.25 -2.16 16 20 Cl -0.08 -0.79 28.98 -51.86 -1.50 -2.29 16 21 C 0.17 2.03 10.97 -17.53 -0.19 1.84 16 22 N -0.54 -7.71 10.39 -12.40 -0.13 -7.84 16 23 C -0.12 -2.20 6.18 -25.58 -0.16 -2.36 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.06 1.41 7.97 -51.93 -0.41 1.00 16 26 H 0.06 1.27 7.85 -51.93 -0.41 0.86 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.40 5.66 8.49 -40.82 -0.35 5.31 16 30 H 0.14 1.81 6.19 -52.48 -0.32 1.49 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.06 1.23 7.37 -51.93 -0.38 0.84 16 34 H 0.05 0.83 7.73 -51.93 -0.40 0.43 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -27.06 297.92 -9.66 -36.72 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.24 Total: 3.65 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.67 Total: -15.78 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.28 Total: -42.36 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.06 -9.66 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378856810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.143 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds