Wall clock time and date at job start Mon Mar 30 2020 08:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48499 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47242 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47098 * 60.00042 * 3 2 1 7 7 C 1.37878 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99705 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.01923 * 301.38733 * 9 7 2 11 11 C 1.54261 * 110.03593 * 62.83276 * 9 7 2 12 12 C 1.54888 * 104.19672 * 142.89104 * 11 9 7 13 13 C 1.54891 * 102.75120 * 322.06034 * 12 11 9 14 14 H 1.09004 * 110.48613 * 279.26383 * 13 12 11 15 15 N 1.46497 * 110.48883 * 156.61810 * 13 12 11 16 16 C 1.39069 * 119.99819 * 90.22278 * 15 13 12 17 17 C 1.39122 * 119.69362 * 0.02562 * 16 15 13 18 18 C 1.38300 * 119.11001 * 179.97438 * 17 16 15 19 19 C 1.38968 * 118.49659 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.34801 * 180.02562 * 19 18 17 21 21 C 1.38124 * 119.30385 * 0.02562 * 19 18 17 22 22 N 1.31977 * 120.83799 * 359.73699 * 21 19 18 23 23 C 1.53876 * 110.03013 * 180.02562 * 9 7 2 24 24 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48928 * 261.57113 * 11 9 7 26 26 H 1.08999 * 110.48469 * 24.21522 * 11 9 7 27 27 H 1.09005 * 110.75648 * 80.37263 * 12 11 9 28 28 H 1.09004 * 110.75897 * 203.55715 * 12 11 9 29 29 H 0.96995 * 120.00065 * 270.22910 * 15 13 12 30 30 H 1.08005 * 120.44431 * 0.02562 * 17 16 15 31 31 H 1.08000 * 120.75055 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.58282 * 180.02562 * 21 19 18 33 33 H 1.08995 * 110.03160 * 359.97438 * 23 9 7 34 34 H 1.08998 * 110.03319 * 121.42692 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 1 0.6021 -2.5561 0.8723 11 6 0.4141 -2.6251 -1.2915 12 6 0.5057 -4.1270 -1.6586 13 6 1.9687 -4.4799 -1.2921 14 1 2.6470 -4.1661 -2.0856 15 7 2.1019 -5.9170 -1.0405 16 6 2.4177 -6.7794 -2.0847 17 6 2.6063 -6.2705 -3.3657 18 6 2.9205 -7.1390 -4.3951 19 6 3.0357 -8.4938 -4.1078 20 17 3.4289 -9.6263 -5.3633 21 6 2.8339 -8.9297 -2.8128 22 7 2.5396 -8.0765 -1.8499 23 6 2.2393 -3.6785 -0.0015 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6213 -2.3407 -1.1038 26 1 0.8414 -2.0117 -2.0848 27 1 -0.1939 -4.7136 -1.0631 28 1 0.3243 -4.2763 -2.7230 29 1 1.9697 -6.2669 -0.1455 30 1 2.5095 -5.2114 -3.5536 31 1 3.0722 -6.7727 -5.3998 32 1 2.9226 -9.9816 -2.5844 33 1 3.2640 -3.3069 -0.0010 34 1 2.0693 -4.3080 0.8719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378856810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:37 Heat of formation + Delta-G solvation = 2.599830 kcal Electronic energy + Delta-G solvation = -17337.043200 eV Core-core repulsion = 14487.213895 eV Total energy + Delta-G solvation = -2849.829305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29767 -39.30254 -37.46650 -35.83831 -34.04080 -33.35966 -30.60438 -29.95361 -28.08777 -25.91696 -24.67015 -23.44897 -21.31405 -20.86030 -18.94126 -18.42033 -17.91089 -17.18576 -16.53015 -16.14959 -15.84913 -15.50334 -15.00700 -14.48278 -14.21743 -14.08491 -13.86381 -13.40399 -13.26606 -12.99616 -12.69508 -12.50819 -12.34913 -12.09928 -11.94191 -11.64008 -11.49279 -11.22525 -10.80669 -10.75787 -10.72842 -10.51624 -10.44861 -8.60911 -8.10426 -6.19604 0.20299 0.30983 1.23024 1.41166 1.44339 1.54362 2.16806 2.44992 2.80325 3.20774 3.60568 3.88566 3.89369 3.97120 3.99786 4.12525 4.30327 4.67509 4.74320 4.75769 4.86629 4.95174 4.99053 5.01816 5.08790 5.17681 5.36287 5.42313 5.52992 5.69064 5.92457 5.97807 6.03497 6.39914 6.59226 6.92498 7.10549 7.48048 8.98247 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.003524 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.404203 B = 7943.461852 C = 8130.378027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.038 3.962 10 H -0.003 1.003 11 C -0.083 4.083 12 C -0.128 4.128 13 C 0.162 3.838 14 H 0.093 0.907 15 N -0.706 5.706 16 C 0.398 3.602 17 C -0.237 4.237 18 C -0.020 4.020 19 C -0.162 4.162 20 Cl -0.062 7.062 21 C 0.161 3.839 22 N -0.557 5.557 23 C -0.110 4.110 24 H 0.259 0.741 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.406 0.594 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.060 0.940 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -15.792 -8.893 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.015 0.985 11 C -0.122 4.122 12 C -0.166 4.166 13 C 0.057 3.943 14 H 0.110 0.890 15 N -0.335 5.335 16 C 0.162 3.838 17 C -0.262 4.262 18 C -0.046 4.046 19 C -0.194 4.194 20 Cl -0.033 7.033 21 C 0.002 3.998 22 N -0.275 5.275 23 C -0.148 4.148 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.242 0.758 30 H 0.165 0.835 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.079 0.921 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.217 -15.840 -8.178 18.575 hybrid contribution 0.135 1.324 -0.294 1.363 sum 5.352 -14.516 -8.472 17.639 Atomic orbital electron populations 1.70098 1.07192 1.27031 1.51547 1.25740 0.95602 1.02331 0.95077 0.85631 0.79270 0.80119 0.77403 1.18982 1.20751 1.21097 1.21699 0.92945 0.91850 1.50144 0.92583 1.19206 0.92875 0.92334 0.93680 0.98502 1.22019 0.98842 0.93158 0.98165 1.22930 0.96340 0.96563 1.00817 1.21816 0.96572 0.77502 0.98403 0.88954 1.44834 1.74218 1.05230 1.09226 1.18724 0.89243 0.87715 0.88116 1.21641 1.10638 1.02181 0.91768 1.21494 0.91988 0.90630 1.00484 1.21675 1.14133 0.91966 0.91605 1.98344 1.92883 1.60420 1.51693 1.22703 0.91103 0.99812 0.86210 1.67342 1.21891 1.02194 1.36088 1.22379 1.00173 0.96357 0.95876 0.93216 0.94931 0.94219 0.92051 0.91144 0.75812 0.83484 0.81997 0.80179 0.92115 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 12.43 21.45 0.27 -52.01 16 2 C 0.01 0.61 5.33 84.65 0.45 1.06 16 3 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -27.80 8.36 25.60 0.21 -27.58 16 8 H 0.06 2.89 7.33 -2.91 -0.02 2.86 16 9 C 0.04 1.79 2.81 -10.82 -0.03 1.76 16 10 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 11 C -0.08 -3.65 5.44 31.67 0.17 -3.48 16 12 C -0.13 -4.28 6.58 31.89 0.21 -4.07 16 13 C 0.16 5.03 2.91 46.08 0.13 5.16 16 14 H 0.09 2.75 6.37 -2.38 -0.02 2.74 16 15 N -0.71 -19.58 5.33 -319.34 -1.70 -21.29 16 16 C 0.40 10.81 7.65 133.04 1.02 11.83 16 17 C -0.24 -5.70 9.24 22.50 0.21 -5.49 16 18 C -0.02 -0.41 9.97 22.46 0.22 -0.19 16 19 C -0.16 -3.33 6.34 22.42 0.14 -3.19 16 20 Cl -0.06 -1.10 28.98 -2.72 -0.08 -1.18 16 21 C 0.16 3.52 10.97 84.64 0.93 4.45 16 22 N -0.56 -14.85 10.39 -193.15 -2.01 -16.86 16 23 C -0.11 -4.04 6.18 31.34 0.19 -3.85 16 24 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.03 1.57 7.97 -2.39 -0.02 1.55 16 26 H 0.04 1.83 7.85 -2.39 -0.02 1.81 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.41 10.84 8.49 -92.71 -0.79 10.05 16 30 H 0.15 3.37 6.19 -2.91 -0.02 3.35 16 31 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.06 2.28 7.37 -2.39 -0.02 2.26 16 34 H 0.06 2.06 7.73 -2.39 -0.02 2.05 16 Total: -1.00 -58.16 297.92 2.70 -55.46 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.33 Total: 14.88 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.86 Total: -23.60 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.44 Total: -90.16 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -58.16 2.70 -55.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378856810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -58.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds