Wall clock time and date at job start Mon Mar 30 2020 08:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47059 * 299.99510 * 3 2 1 6 6 H 1.48507 * 109.47645 * 59.99856 * 3 2 1 7 7 C 1.37872 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99841 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.01820 * 300.06292 * 9 7 2 11 11 C 1.53873 * 110.02927 * 61.45385 * 9 7 2 12 12 C 1.54266 * 106.60075 * 119.28117 * 11 9 7 13 13 C 1.54893 * 104.19229 * 23.61088 * 12 11 9 14 14 H 1.09008 * 110.75839 * 80.55605 * 13 12 11 15 15 N 1.46498 * 110.75732 * 203.73818 * 13 12 11 16 16 C 1.39172 * 120.00136 * 273.54623 * 15 13 12 17 17 C 1.39532 * 120.85920 * 359.72473 * 16 15 13 18 18 C 1.37838 * 119.09674 * 179.70458 * 17 16 15 19 19 N 1.32034 * 120.86327 * 0.58042 * 18 17 16 20 20 C 1.32071 * 121.88708 * 359.70925 * 19 18 17 21 21 Cl 1.73595 * 119.59657 * 180.02562 * 20 19 18 22 22 C 1.38092 * 120.81233 * 359.97438 * 20 19 18 23 23 C 1.54266 * 110.03307 * 178.61845 * 9 7 2 24 24 H 0.97002 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.03454 * 238.57038 * 11 9 7 26 26 H 1.09003 * 110.03151 * 359.95277 * 11 9 7 27 27 H 1.08997 * 110.48349 * 142.28259 * 12 11 9 28 28 H 1.08995 * 110.49212 * 264.80093 * 12 11 9 29 29 H 0.97002 * 119.99894 * 93.54662 * 15 13 12 30 30 H 1.07998 * 120.44967 * 359.97150 * 17 16 15 31 31 H 1.08002 * 119.56896 * 180.28848 * 18 17 16 32 32 H 1.07993 * 120.47402 * 180.02562 * 22 20 19 33 33 H 1.08998 * 110.48379 * 335.78457 * 23 9 7 34 34 H 1.09001 * 110.48707 * 98.43031 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6199 -2.5656 0.8867 11 6 0.3898 -2.6104 -1.2697 12 6 0.8871 -3.8562 -2.0316 13 6 1.5494 -4.7308 -0.9382 14 1 0.7966 -5.2886 -0.3810 15 7 2.5357 -5.6399 -1.5273 16 6 2.1335 -6.8768 -2.0224 17 6 0.7966 -7.2717 -1.9618 18 6 0.4374 -8.5021 -2.4686 19 7 1.3412 -9.3075 -2.9958 20 6 2.6169 -8.9734 -3.0666 21 17 3.7547 -10.0782 -3.7725 22 6 3.0568 -7.7555 -2.5868 23 6 2.2417 -3.6812 -0.0338 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6593 -2.7317 -1.0001 26 1 0.5161 -1.7201 -1.8857 27 1 0.0494 -4.3844 -2.4870 28 1 1.6165 -3.5734 -2.7905 29 1 3.4691 -5.3797 -1.5723 30 1 0.0527 -6.6202 -1.5275 31 1 -0.5960 -8.8135 -2.4299 32 1 4.1012 -7.4876 -2.6479 33 1 3.1916 -3.3703 -0.4685 34 1 2.3927 -4.0817 0.9687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378868489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:36 Heat of formation + Delta-G solvation = 11.423104 kcal Electronic energy + Delta-G solvation = -17337.725407 eV Core-core repulsion = 14488.278708 eV Total energy + Delta-G solvation = -2849.446699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23190 -37.98969 -36.63166 -35.01994 -32.45078 -30.99302 -30.19115 -28.28518 -26.78027 -24.18692 -23.47833 -22.39463 -20.04195 -19.19993 -17.87276 -16.87098 -16.14273 -15.74845 -15.16413 -14.83960 -14.65827 -14.42381 -14.17579 -13.81274 -12.97083 -12.62724 -12.22888 -11.83019 -11.74525 -11.38860 -11.33622 -11.15029 -10.94242 -10.58184 -10.48755 -10.38067 -10.02209 -9.76393 -9.58093 -9.37644 -9.01388 -8.81365 -8.45730 -7.75609 -6.09752 -4.13592 1.01782 1.47664 1.80277 3.23516 3.32397 3.34801 3.41936 3.76702 4.36643 4.54652 4.95461 5.05656 5.13449 5.17417 5.28004 5.43739 5.56579 5.63501 5.72363 5.98035 6.10559 6.29304 6.37291 6.44351 6.50546 6.56751 6.79167 7.03986 7.20864 7.30840 7.60611 7.67103 7.81134 7.87461 7.87694 8.34868 8.89485 9.51105 10.99289 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.046639 B = 0.003563 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.212940 B = 7856.975018 C = 8222.723385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.030 0.970 11 C -0.091 4.091 12 C -0.136 4.136 13 C 0.134 3.866 14 H 0.082 0.918 15 N -0.714 5.714 16 C 0.274 3.726 17 C -0.249 4.249 18 C 0.155 3.845 19 N -0.532 5.532 20 C 0.216 3.784 21 Cl -0.046 7.046 22 C -0.243 4.243 23 C -0.117 4.117 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.403 0.597 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -14.164 -4.427 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.048 0.952 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.030 3.970 14 H 0.100 0.900 15 N -0.338 5.338 16 C 0.158 3.842 17 C -0.275 4.275 18 C 0.000 4.000 19 N -0.248 5.248 20 C 0.052 3.948 21 Cl -0.017 7.017 22 C -0.271 4.271 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.238 0.762 30 H 0.159 0.841 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.081 0.919 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.840 -14.783 -4.704 15.772 hybrid contribution 1.126 1.831 0.187 2.158 sum 3.967 -12.952 -4.516 14.279 Atomic orbital electron populations 1.69981 1.05852 1.26479 1.50246 1.24976 0.94856 0.99084 0.95138 0.86592 0.80151 0.83967 0.77622 1.19824 1.21037 1.21026 1.21245 0.92741 0.90378 1.50981 0.92643 1.19206 0.92225 0.91439 0.94235 0.95226 1.22040 0.98141 0.94687 0.98133 1.22876 0.99196 0.97752 0.97665 1.22350 0.90566 0.89403 0.94696 0.90024 1.45083 1.11301 1.14250 1.63187 1.17973 0.92597 0.85525 0.88153 1.21783 0.95529 1.00316 1.09869 1.22302 0.98041 0.88874 0.90812 1.67008 1.00702 1.36059 1.21030 1.21144 0.89562 0.88868 0.95189 1.98382 1.57233 1.63795 1.82321 1.21112 1.00909 0.94977 1.10065 1.22735 1.00182 0.95641 0.96961 0.93038 0.94065 0.91454 0.93270 0.92223 0.76190 0.84106 0.82218 0.84433 0.91869 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 12.33 55.43 0.68 -23.76 16 2 C 0.06 1.63 5.07 -17.82 -0.09 1.54 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.29 8.34 -34.44 -0.29 -13.57 16 8 H 0.06 1.42 7.55 -52.49 -0.40 1.02 16 9 C 0.05 1.09 2.84 -90.65 -0.26 0.83 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.09 -1.96 5.56 -25.61 -0.14 -2.10 16 12 C -0.14 -2.32 6.51 -25.07 -0.16 -2.49 16 13 C 0.13 2.05 2.87 -65.94 -0.19 1.86 16 14 H 0.08 1.21 6.71 -51.92 -0.35 0.86 16 15 N -0.71 -9.41 5.37 -50.08 -0.27 -9.68 16 16 C 0.27 3.58 6.69 -83.62 -0.56 3.02 16 17 C -0.25 -3.12 9.28 -39.25 -0.36 -3.48 16 18 C 0.15 1.86 11.17 -17.61 -0.20 1.66 16 19 N -0.53 -7.40 10.34 -10.46 -0.11 -7.50 16 20 C 0.22 2.88 7.27 -17.50 -0.13 2.75 16 21 Cl -0.05 -0.54 29.10 -51.86 -1.51 -2.05 16 22 C -0.24 -3.04 9.76 -39.20 -0.38 -3.42 16 23 C -0.12 -2.11 5.95 -25.07 -0.15 -2.26 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.64 7.17 -51.93 -0.37 1.27 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.40 4.80 8.55 -40.82 -0.35 4.45 16 30 H 0.14 1.66 6.43 -52.49 -0.34 1.33 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.06 1.14 7.55 -51.93 -0.39 0.75 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -27.42 298.42 -8.93 -36.35 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.29 Total: 2.33 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.91 Total: -15.67 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.31 Total: -40.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.42 -8.93 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378868489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.773 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds