Wall clock time and date at job start Mon Mar 30 2020 08:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47059 * 299.99510 * 3 2 1 6 6 H 1.48507 * 109.47645 * 59.99856 * 3 2 1 7 7 C 1.37872 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99841 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.01820 * 300.06292 * 9 7 2 11 11 C 1.53873 * 110.02927 * 61.45385 * 9 7 2 12 12 C 1.54266 * 106.60075 * 119.28117 * 11 9 7 13 13 C 1.54893 * 104.19229 * 23.61088 * 12 11 9 14 14 H 1.09008 * 110.75839 * 80.55605 * 13 12 11 15 15 N 1.46498 * 110.75732 * 203.73818 * 13 12 11 16 16 C 1.39172 * 120.00136 * 273.54623 * 15 13 12 17 17 C 1.39532 * 120.85920 * 359.72473 * 16 15 13 18 18 C 1.37838 * 119.09674 * 179.70458 * 17 16 15 19 19 N 1.32034 * 120.86327 * 0.58042 * 18 17 16 20 20 C 1.32071 * 121.88708 * 359.70925 * 19 18 17 21 21 Cl 1.73595 * 119.59657 * 180.02562 * 20 19 18 22 22 C 1.38092 * 120.81233 * 359.97438 * 20 19 18 23 23 C 1.54266 * 110.03307 * 178.61845 * 9 7 2 24 24 H 0.97002 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.03454 * 238.57038 * 11 9 7 26 26 H 1.09003 * 110.03151 * 359.95277 * 11 9 7 27 27 H 1.08997 * 110.48349 * 142.28259 * 12 11 9 28 28 H 1.08995 * 110.49212 * 264.80093 * 12 11 9 29 29 H 0.97002 * 119.99894 * 93.54662 * 15 13 12 30 30 H 1.07998 * 120.44967 * 359.97150 * 17 16 15 31 31 H 1.08002 * 119.56896 * 180.28848 * 18 17 16 32 32 H 1.07993 * 120.47402 * 180.02562 * 22 20 19 33 33 H 1.08998 * 110.48379 * 335.78457 * 23 9 7 34 34 H 1.09001 * 110.48707 * 98.43031 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6199 -2.5656 0.8867 11 6 0.3898 -2.6104 -1.2697 12 6 0.8871 -3.8562 -2.0316 13 6 1.5494 -4.7308 -0.9382 14 1 0.7966 -5.2886 -0.3810 15 7 2.5357 -5.6399 -1.5273 16 6 2.1335 -6.8768 -2.0224 17 6 0.7966 -7.2717 -1.9618 18 6 0.4374 -8.5021 -2.4686 19 7 1.3412 -9.3075 -2.9958 20 6 2.6169 -8.9734 -3.0666 21 17 3.7547 -10.0782 -3.7725 22 6 3.0568 -7.7555 -2.5868 23 6 2.2417 -3.6812 -0.0338 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6593 -2.7317 -1.0001 26 1 0.5161 -1.7201 -1.8857 27 1 0.0494 -4.3844 -2.4870 28 1 1.6165 -3.5734 -2.7905 29 1 3.4691 -5.3797 -1.5723 30 1 0.0527 -6.6202 -1.5275 31 1 -0.5960 -8.8135 -2.4299 32 1 4.1012 -7.4876 -2.6479 33 1 3.1916 -3.3703 -0.4685 34 1 2.3927 -4.0817 0.9687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378868489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:35 Heat of formation + Delta-G solvation = -3.712917 kcal Electronic energy + Delta-G solvation = -17338.381754 eV Core-core repulsion = 14488.278708 eV Total energy + Delta-G solvation = -2850.103046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22532 -39.35549 -37.59593 -36.32560 -34.25508 -31.98086 -31.36257 -29.91555 -28.25039 -25.87827 -24.53476 -23.49205 -21.34811 -20.91015 -18.94555 -18.35290 -17.59741 -16.76337 -16.58681 -16.36737 -15.93600 -15.52647 -15.45679 -14.70792 -14.51883 -14.23828 -13.68963 -13.27121 -12.97365 -12.85834 -12.53692 -12.48301 -12.34932 -12.25517 -12.13214 -11.75458 -11.57638 -11.35447 -11.10035 -10.71129 -10.54829 -10.45421 -9.94980 -8.81358 -8.12020 -6.21133 0.07191 0.49573 0.85769 1.39478 1.42796 1.52293 2.32215 2.44351 2.80998 3.19644 3.67726 3.86884 3.99805 4.02826 4.08755 4.16003 4.31901 4.57157 4.73697 4.74990 4.84614 4.90393 5.00162 5.03470 5.12982 5.16038 5.40875 5.45884 5.56189 5.68224 5.94533 5.96255 6.20314 6.40112 6.67733 6.91503 6.92760 7.46521 8.96525 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.046639 B = 0.003563 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.212940 B = 7856.975018 C = 8222.723385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.038 3.962 10 H 0.000 1.000 11 C -0.083 4.083 12 C -0.124 4.124 13 C 0.154 3.846 14 H 0.093 0.907 15 N -0.710 5.710 16 C 0.265 3.735 17 C -0.254 4.254 18 C 0.154 3.846 19 N -0.552 5.552 20 C 0.201 3.799 21 Cl -0.038 7.038 22 C -0.240 4.240 23 C -0.108 4.108 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.410 0.590 30 H 0.149 0.851 31 H 0.189 0.811 32 H 0.154 0.846 33 H 0.064 0.936 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -15.240 -4.823 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.019 3.981 10 H 0.018 0.982 11 C -0.122 4.122 12 C -0.163 4.163 13 C 0.049 3.951 14 H 0.111 0.889 15 N -0.336 5.336 16 C 0.149 3.851 17 C -0.279 4.279 18 C -0.001 4.001 19 N -0.268 5.268 20 C 0.038 3.962 21 Cl -0.010 7.010 22 C -0.267 4.267 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.247 0.753 30 H 0.167 0.833 31 H 0.205 0.795 32 H 0.172 0.828 33 H 0.082 0.918 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.653 -15.883 -5.108 17.080 hybrid contribution 0.864 2.125 0.311 2.315 sum 4.517 -13.758 -4.797 15.255 Atomic orbital electron populations 1.70095 1.07126 1.27026 1.51470 1.25710 0.95609 1.02266 0.95173 0.85660 0.79277 0.80246 0.77399 1.19025 1.20950 1.20935 1.21655 0.92958 0.91910 1.50095 0.92745 1.19206 0.92961 0.92452 0.93510 0.98224 1.21809 0.97420 0.95454 0.97537 1.22742 0.99875 0.96075 0.97633 1.21955 0.90665 0.89034 0.93402 0.88873 1.44801 1.11170 1.14057 1.63563 1.18077 0.93082 0.85381 0.88514 1.21961 0.95532 1.00659 1.09746 1.22769 0.99035 0.88472 0.89818 1.67058 1.01215 1.36855 1.21631 1.21359 0.89769 0.89437 0.95629 1.98381 1.56885 1.63546 1.82186 1.21254 1.01701 0.94487 1.09268 1.22530 0.99023 0.94632 0.98381 0.93208 0.95280 0.95028 0.91353 0.92386 0.75334 0.83325 0.79465 0.82839 0.91763 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 12.33 21.44 0.26 -51.50 16 2 C 0.01 0.60 5.07 84.65 0.43 1.03 16 3 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.53 -27.50 8.34 25.60 0.21 -27.29 16 8 H 0.05 2.77 7.55 -2.91 -0.02 2.75 16 9 C 0.04 1.73 2.84 -10.81 -0.03 1.70 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.08 -3.62 5.56 31.32 0.17 -3.44 16 12 C -0.12 -4.06 6.51 31.67 0.21 -3.85 16 13 C 0.15 4.40 2.87 46.28 0.13 4.53 16 14 H 0.09 2.51 6.71 -2.38 -0.02 2.49 16 15 N -0.71 -16.81 5.37 -312.37 -1.68 -18.49 16 16 C 0.26 6.21 6.69 38.57 0.26 6.47 16 17 C -0.25 -5.64 9.28 22.49 0.21 -5.44 16 18 C 0.15 3.30 11.17 84.57 0.94 4.25 16 19 N -0.55 -14.16 10.34 -187.00 -1.93 -16.09 16 20 C 0.20 4.95 7.27 84.62 0.61 5.57 16 21 Cl -0.04 -0.84 29.10 -2.72 -0.08 -0.92 16 22 C -0.24 -5.42 9.76 22.51 0.22 -5.20 16 23 C -0.11 -3.74 5.95 31.67 0.19 -3.56 16 24 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 1.56 7.17 -2.39 -0.02 1.55 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 29 H 0.41 8.64 8.55 -92.71 -0.79 7.85 16 30 H 0.15 3.05 6.43 -2.91 -0.02 3.03 16 31 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.06 2.22 7.55 -2.39 -0.02 2.20 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -58.96 298.42 2.48 -56.47 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.32 Total: 11.37 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.56 Total: -25.23 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -3.35 Total: -86.08 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -58.96 2.48 -56.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378868489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.761 kcal (2) G-P(sol) polarization free energy of solvation -58.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds