Wall clock time and date at job start Mon Mar 30 2020 07:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99538 * 2 1 4 4 H 1.48503 * 109.47174 * 269.99563 * 3 2 1 5 5 H 1.48498 * 109.47416 * 29.99848 * 3 2 1 6 6 H 1.48504 * 109.46922 * 149.99924 * 3 2 1 7 7 C 1.37872 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99826 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47217 * 299.99886 * 9 7 2 11 11 N 1.46898 * 109.46998 * 60.00227 * 9 7 2 12 12 C 1.50697 * 109.46942 * 180.02562 * 9 7 2 13 13 C 1.38415 * 119.91335 * 286.30832 * 12 9 7 14 14 C 1.38272 * 119.94137 * 179.72121 * 13 12 9 15 15 C 1.38581 * 119.96967 * 0.54918 * 14 13 12 16 16 C 1.38042 * 120.30911 * 359.72745 * 15 14 13 17 17 Cl 1.73596 * 120.08375 * 180.02562 * 16 15 14 18 18 C 1.38722 * 119.91535 * 106.57951 * 12 9 7 19 19 N 1.39746 * 120.11221 * 0.02979 * 18 12 9 20 20 C 1.51394 * 109.73746 * 180.32736 * 14 13 12 21 21 C 1.54339 * 105.17846 * 17.45246 * 20 14 13 22 22 C 1.51394 * 130.30257 * 0.61511 * 13 12 9 23 23 H 0.97000 * 120.00494 * 0.02562 * 1 2 3 24 24 H 1.00898 * 110.99893 * 292.03976 * 11 9 7 25 25 H 1.00904 * 111.00062 * 55.99073 * 11 9 7 26 26 H 1.08009 * 119.84508 * 179.74520 * 15 14 13 27 27 H 0.96993 * 120.00100 * 5.09584 * 19 18 12 28 28 H 0.97003 * 119.99713 * 185.10267 * 19 18 12 29 29 H 1.09004 * 110.30344 * 136.37912 * 20 14 13 30 30 H 1.08999 * 110.30632 * 258.52848 * 20 14 13 31 31 H 1.08995 * 110.82313 * 91.84688 * 21 20 14 32 32 H 1.09006 * 110.82404 * 215.20299 * 21 20 14 33 33 H 1.08992 * 110.45531 * 43.31656 * 22 13 12 34 34 H 1.09007 * 110.17060 * 281.24694 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8919 11 7 0.4061 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0027 13 6 2.9351 -3.9512 -1.1485 14 6 3.8381 -4.9983 -1.1466 15 6 4.0281 -5.7465 0.0044 16 6 3.3236 -5.4482 1.1534 17 17 3.5667 -6.3888 2.5920 18 6 2.4193 -4.3922 1.1558 19 7 1.7026 -4.0855 2.3156 20 6 4.4790 -5.1232 -2.5124 21 6 4.2044 -3.7754 -3.2125 22 6 2.9152 -3.2953 -2.5128 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3410 -1.9008 -1.1583 25 1 0.9559 -2.4615 -2.0354 26 1 4.7309 -6.5666 0.0024 27 1 1.0190 -3.3976 2.2956 28 1 1.8888 -4.5604 3.1407 29 1 5.5522 -5.2861 -2.4132 30 1 4.0220 -5.9397 -3.0715 31 1 5.0221 -3.0757 -3.0403 32 1 4.0386 -3.9200 -4.2801 33 1 2.9203 -2.2099 -2.4138 34 1 2.0378 -3.6192 -3.0728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380634917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:16 Heat of formation + Delta-G solvation = 5.223669 kcal Electronic energy + Delta-G solvation = -18380.881753 eV Core-core repulsion = 15531.166226 eV Total energy + Delta-G solvation = -2849.715527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.76924 -36.62599 -35.77485 -34.50702 -32.56303 -31.58033 -29.17769 -27.49323 -26.67236 -25.61031 -23.06886 -20.91139 -20.21158 -19.41437 -17.07854 -16.28389 -16.14102 -15.07071 -14.93985 -14.44808 -14.30430 -13.80064 -13.29045 -12.94803 -12.70713 -12.44819 -12.15834 -11.82401 -11.43316 -11.29867 -11.11064 -10.92047 -10.76320 -10.75142 -10.66151 -10.53209 -10.44962 -9.97308 -9.49947 -9.43150 -8.67350 -7.77354 -7.22861 -6.76043 -6.11439 -4.28418 1.94112 2.16589 2.66361 3.18766 3.27020 3.31553 4.25273 4.39404 4.47220 5.02923 5.09876 5.12495 5.42291 5.50500 5.74742 5.80779 6.03152 6.12245 6.18549 6.21377 6.33013 6.57975 6.60804 6.65142 6.73652 6.76764 6.85934 7.23402 7.45216 7.64374 7.71854 8.06319 8.08006 8.38700 8.65955 8.91463 9.09599 9.43302 10.84432 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.007818 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.511411 B = 3580.802304 C = 4509.963521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.253 3.747 10 H 0.040 0.960 11 N -0.853 5.853 12 C -0.081 4.081 13 C -0.027 4.027 14 C -0.158 4.158 15 C -0.075 4.075 16 C -0.120 4.120 17 Cl -0.096 7.096 18 C 0.229 3.771 19 N -0.870 5.870 20 C -0.066 4.066 21 C -0.121 4.121 22 C -0.082 4.082 23 H 0.265 0.735 24 H 0.352 0.648 25 H 0.318 0.682 26 H 0.117 0.883 27 H 0.406 0.594 28 H 0.391 0.609 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -8.421 -1.665 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.143 3.857 10 H 0.058 0.942 11 N -0.384 5.384 12 C -0.087 4.087 13 C -0.028 4.028 14 C -0.160 4.160 15 C -0.094 4.094 16 C -0.151 4.151 17 Cl -0.068 7.068 18 C 0.122 3.878 19 N -0.411 5.411 20 C -0.103 4.103 21 C -0.159 4.159 22 C -0.119 4.119 23 H 0.075 0.925 24 H 0.167 0.833 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.239 0.761 28 H 0.219 0.781 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.408 -9.117 -1.303 10.680 hybrid contribution 0.652 1.942 0.533 2.116 sum 6.060 -7.176 -0.769 9.424 Atomic orbital electron populations 1.69746 1.05792 1.27185 1.50616 1.25005 0.94909 0.99204 0.94514 0.86562 0.79962 0.83123 0.78210 1.20588 1.21171 1.19878 1.21820 0.93656 0.90886 1.51385 0.92607 1.17692 0.88714 0.87909 0.91372 0.94245 1.59565 1.16236 1.58231 1.04410 1.19429 1.00976 0.98040 0.90208 1.20026 0.93842 0.94502 0.94446 1.20156 1.01936 0.99039 0.94854 1.19873 0.99417 0.99684 0.90413 1.19968 1.06978 0.99270 0.88902 1.98272 1.96468 1.72634 1.39402 1.17134 0.90994 0.91439 0.88231 1.42636 1.43610 1.45759 1.09141 1.20833 0.99458 0.97835 0.92204 1.22306 0.98205 0.96464 0.98933 1.21090 0.97231 1.01530 0.92039 0.92505 0.83299 0.87061 0.86540 0.76123 0.78082 0.91858 0.91263 0.91449 0.91239 0.89464 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 11.59 55.43 0.64 -23.01 16 2 C 0.07 1.71 5.39 -17.82 -0.10 1.61 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -13.83 8.04 -34.44 -0.28 -14.11 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.25 6.02 2.74 -70.02 -0.19 5.82 16 10 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 11 N -0.85 -19.65 9.01 -6.65 -0.06 -19.70 16 12 C -0.08 -1.76 4.91 -104.38 -0.51 -2.27 16 13 C -0.03 -0.52 5.73 -104.20 -0.60 -1.12 16 14 C -0.16 -2.75 6.14 -104.14 -0.64 -3.39 16 15 C -0.07 -1.28 9.82 -39.53 -0.39 -1.66 16 16 C -0.12 -2.17 6.33 -39.36 -0.25 -2.42 16 17 Cl -0.10 -1.48 27.61 -51.86 -1.43 -2.91 16 18 C 0.23 4.55 6.73 -83.78 -0.56 3.99 16 19 N -0.87 -15.59 8.96 32.41 0.29 -15.30 16 20 C -0.07 -0.92 6.77 -26.84 -0.18 -1.11 16 21 C -0.12 -1.69 7.08 -25.33 -0.18 -1.87 16 22 C -0.08 -1.42 4.69 -26.84 -0.13 -1.54 16 23 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.35 8.65 7.20 -39.29 -0.28 8.37 16 25 H 0.32 6.92 5.29 -39.29 -0.21 6.71 16 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.41 7.58 6.51 -40.82 -0.27 7.31 16 28 H 0.39 6.09 7.53 -40.82 -0.31 5.78 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.67 7.19 -51.93 -0.37 1.30 16 34 H 0.08 1.35 7.38 -51.93 -0.38 0.96 16 LS Contribution 285.99 15.07 4.31 4.31 Total: -1.00 -26.59 285.99 -9.05 -35.64 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -3.78 Total: 23.57 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -4.00 Total: -18.06 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.87 Total: -58.02 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -1.43 Total: -2.91 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.59 -9.05 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380634917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.867 kcal (2) G-P(sol) polarization free energy of solvation -26.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds