Wall clock time and date at job start Mon Mar 30 2020 07:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99538 * 2 1 4 4 H 1.48503 * 109.47174 * 269.99563 * 3 2 1 5 5 H 1.48498 * 109.47416 * 29.99848 * 3 2 1 6 6 H 1.48504 * 109.46922 * 149.99924 * 3 2 1 7 7 C 1.37872 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99826 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47217 * 299.99886 * 9 7 2 11 11 N 1.46898 * 109.46998 * 60.00227 * 9 7 2 12 12 C 1.50697 * 109.46942 * 180.02562 * 9 7 2 13 13 C 1.38415 * 119.91335 * 286.30832 * 12 9 7 14 14 C 1.38272 * 119.94137 * 179.72121 * 13 12 9 15 15 C 1.38581 * 119.96967 * 0.54918 * 14 13 12 16 16 C 1.38042 * 120.30911 * 359.72745 * 15 14 13 17 17 Cl 1.73596 * 120.08375 * 180.02562 * 16 15 14 18 18 C 1.38722 * 119.91535 * 106.57951 * 12 9 7 19 19 N 1.39746 * 120.11221 * 0.02979 * 18 12 9 20 20 C 1.51394 * 109.73746 * 180.32736 * 14 13 12 21 21 C 1.54339 * 105.17846 * 17.45246 * 20 14 13 22 22 C 1.51394 * 130.30257 * 0.61511 * 13 12 9 23 23 H 0.97000 * 120.00494 * 0.02562 * 1 2 3 24 24 H 1.00898 * 110.99893 * 292.03976 * 11 9 7 25 25 H 1.00904 * 111.00062 * 55.99073 * 11 9 7 26 26 H 1.08009 * 119.84508 * 179.74520 * 15 14 13 27 27 H 0.96993 * 120.00100 * 5.09584 * 19 18 12 28 28 H 0.97003 * 119.99713 * 185.10267 * 19 18 12 29 29 H 1.09004 * 110.30344 * 136.37912 * 20 14 13 30 30 H 1.08999 * 110.30632 * 258.52848 * 20 14 13 31 31 H 1.08995 * 110.82313 * 91.84688 * 21 20 14 32 32 H 1.09006 * 110.82404 * 215.20299 * 21 20 14 33 33 H 1.08992 * 110.45531 * 43.31656 * 22 13 12 34 34 H 1.09007 * 110.17060 * 281.24694 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8919 11 7 0.4061 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0027 13 6 2.9351 -3.9512 -1.1485 14 6 3.8381 -4.9983 -1.1466 15 6 4.0281 -5.7465 0.0044 16 6 3.3236 -5.4482 1.1534 17 17 3.5667 -6.3888 2.5920 18 6 2.4193 -4.3922 1.1558 19 7 1.7026 -4.0855 2.3156 20 6 4.4790 -5.1232 -2.5124 21 6 4.2044 -3.7754 -3.2125 22 6 2.9152 -3.2953 -2.5128 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3410 -1.9008 -1.1583 25 1 0.9559 -2.4615 -2.0354 26 1 4.7309 -6.5666 0.0024 27 1 1.0190 -3.3976 2.2956 28 1 1.8888 -4.5604 3.1407 29 1 5.5522 -5.2861 -2.4132 30 1 4.0220 -5.9397 -3.0715 31 1 5.0221 -3.0757 -3.0403 32 1 4.0386 -3.9200 -4.2801 33 1 2.9203 -2.2099 -2.4138 34 1 2.0378 -3.6192 -3.0728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380634917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:15 Heat of formation + Delta-G solvation = -10.886499 kcal Electronic energy + Delta-G solvation = -18381.580342 eV Core-core repulsion = 15531.166226 eV Total energy + Delta-G solvation = -2850.414116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17267 -37.93979 -37.24009 -36.18353 -33.97032 -33.39249 -30.73533 -28.85830 -28.21844 -27.31172 -24.68178 -22.30124 -21.60556 -20.89145 -18.79473 -18.01114 -17.55174 -16.75383 -16.24381 -16.00274 -15.72868 -15.40807 -14.92695 -14.40804 -14.24887 -13.89969 -13.72642 -13.27343 -12.96956 -12.86461 -12.68186 -12.50876 -12.38872 -12.20187 -11.93373 -11.91558 -11.80739 -11.79092 -11.10649 -10.77865 -10.63778 -9.30103 -9.08127 -8.25094 -8.02313 -6.32505 0.49634 0.74432 1.30408 1.34977 1.38651 1.47219 2.36727 2.91449 3.03206 3.10158 3.76907 3.87388 4.16132 4.32771 4.40081 4.48596 4.75121 4.80800 4.88171 4.99700 5.02925 5.08979 5.19698 5.26481 5.28262 5.44193 5.50400 5.66516 5.72791 5.96125 6.07886 6.17310 6.59288 6.68665 6.97203 7.00275 7.17533 7.43074 8.84247 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.007818 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.511411 B = 3580.802304 C = 4509.963521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.039 0.961 9 C 0.260 3.740 10 H 0.016 0.984 11 N -0.847 5.847 12 C -0.117 4.117 13 C -0.048 4.048 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.127 4.127 17 Cl -0.073 7.073 18 C 0.209 3.791 19 N -0.867 5.867 20 C -0.061 4.061 21 C -0.113 4.113 22 C -0.083 4.083 23 H 0.266 0.734 24 H 0.340 0.660 25 H 0.324 0.676 26 H 0.146 0.854 27 H 0.401 0.599 28 H 0.400 0.600 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -9.567 -2.531 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.057 0.943 9 C 0.149 3.851 10 H 0.034 0.966 11 N -0.377 5.377 12 C -0.122 4.122 13 C -0.049 4.049 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.158 4.158 17 Cl -0.045 7.045 18 C 0.103 3.897 19 N -0.409 5.409 20 C -0.098 4.098 21 C -0.150 4.150 22 C -0.120 4.120 23 H 0.075 0.925 24 H 0.154 0.846 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.232 0.768 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.144 -10.283 -2.165 12.707 hybrid contribution 0.126 2.228 0.845 2.386 sum 7.270 -8.055 -1.320 10.930 Atomic orbital electron populations 1.69833 1.06623 1.27723 1.51139 1.25612 0.95635 1.01756 0.94428 0.85699 0.78546 0.79942 0.78265 1.19930 1.20908 1.20349 1.21926 0.92870 0.92265 1.51210 0.94265 1.17491 0.88676 0.88430 0.90461 0.96575 1.59563 1.15973 1.57479 1.04714 1.19385 1.02136 0.98621 0.92092 1.20386 0.94180 0.95632 0.94685 1.20624 1.01054 0.97840 0.96596 1.20262 0.99072 0.99964 0.89778 1.20125 1.06432 0.98962 0.90285 1.98275 1.96303 1.71787 1.38121 1.17323 0.91945 0.92242 0.88225 1.42572 1.43339 1.45700 1.09322 1.20917 1.00689 0.98226 0.89989 1.22318 0.96046 0.96401 1.00273 1.21106 0.99473 0.99757 0.91680 0.92474 0.84585 0.86380 0.83634 0.76835 0.76958 0.89587 0.89309 0.91348 0.88353 0.92153 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.22 11.59 21.44 0.25 -48.97 16 2 C 0.03 1.36 5.39 84.65 0.46 1.82 16 3 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -28.70 8.04 25.60 0.21 -28.50 16 8 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 9 C 0.26 12.75 2.74 43.42 0.12 12.87 16 10 H 0.02 0.87 5.80 -2.39 -0.01 0.86 16 11 N -0.85 -40.16 9.01 -174.96 -1.58 -41.73 16 12 C -0.12 -5.14 4.91 -19.71 -0.10 -5.23 16 13 C -0.05 -1.84 5.73 -19.59 -0.11 -1.96 16 14 C -0.16 -5.19 6.14 -19.55 -0.12 -5.31 16 15 C -0.07 -2.27 9.82 22.31 0.22 -2.06 16 16 C -0.13 -4.41 6.33 22.41 0.14 -4.26 16 17 Cl -0.07 -2.12 27.61 -2.72 -0.08 -2.20 16 18 C 0.21 8.37 6.73 38.18 0.26 8.63 16 19 N -0.87 -31.69 8.96 -51.37 -0.46 -32.15 16 20 C -0.06 -1.48 6.77 30.52 0.21 -1.27 16 21 C -0.11 -2.82 7.08 31.50 0.22 -2.60 16 22 C -0.08 -2.82 4.69 30.52 0.14 -2.68 16 23 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 24 H 0.34 17.29 7.20 -89.70 -0.65 16.65 16 25 H 0.32 14.48 5.29 -89.69 -0.47 14.00 16 26 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 27 H 0.40 15.60 6.51 -92.71 -0.60 15.00 16 28 H 0.40 12.49 7.53 -92.71 -0.70 11.80 16 29 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.06 2.35 7.19 -2.39 -0.02 2.33 16 34 H 0.08 2.70 7.38 -2.38 -0.02 2.69 16 Total: -1.00 -57.30 285.99 0.56 -56.74 By element: Atomic # 1 Polarization: 55.59 SS G_CDS: -1.24 Total: 54.34 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 1.64 Total: -30.55 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -1.79 Total: -122.86 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -57.30 0.56 -56.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380634917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.849 kcal (2) G-P(sol) polarization free energy of solvation -57.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds