Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48502 * 109.46976 * 240.00197 * 3 2 1 5 5 H 1.48504 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47367 * 120.00263 * 3 2 1 7 7 C 1.37876 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00036 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49050 * 59.96990 * 9 7 2 11 11 C 1.53091 * 109.48007 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.21206 * 62.40622 * 11 9 7 13 13 C 1.53174 * 109.03724 * 56.94941 * 12 11 9 14 14 C 1.53084 * 109.16456 * 303.01556 * 13 12 11 15 15 H 1.08997 * 109.48095 * 297.62758 * 14 13 12 16 16 C 1.50703 * 109.48277 * 177.60348 * 14 13 12 17 17 C 1.38261 * 119.99039 * 100.00146 * 16 14 13 18 18 C 1.38226 * 120.02356 * 180.02562 * 17 16 14 19 19 C 1.38235 * 120.01535 * 359.97438 * 18 17 16 20 20 C 1.38333 * 119.98482 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.01423 * 180.02562 * 20 19 18 22 22 C 1.38198 * 119.99255 * 279.72306 * 16 14 13 23 23 O 1.42906 * 109.41372 * 57.61236 * 14 13 12 24 24 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52401 * 302.46775 * 11 9 7 26 26 H 1.09004 * 109.52068 * 182.34420 * 11 9 7 27 27 H 1.09004 * 109.53956 * 176.81728 * 12 11 9 28 28 H 1.08997 * 109.54550 * 296.98990 * 12 11 9 29 29 H 1.09007 * 109.52410 * 62.92341 * 13 12 11 30 30 H 1.09003 * 109.52246 * 183.11215 * 13 12 11 31 31 H 1.08001 * 119.99020 * 359.97438 * 17 16 14 32 32 H 1.07992 * 119.99353 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.01018 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00471 * 0.02562 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5568 -0.8899 11 6 2.2458 -3.6629 -0.0018 12 6 3.0836 -3.6113 1.2795 13 6 2.1468 -3.6487 2.4908 14 6 1.1571 -2.4846 2.3967 15 1 1.7016 -1.5410 2.4286 16 6 0.1943 -2.5487 3.5543 17 6 0.3845 -1.7368 4.6572 18 6 -0.4979 -1.7954 5.7195 19 6 -1.5714 -2.6654 5.6797 20 6 -1.7627 -3.4772 4.5760 21 17 -3.1110 -4.5696 4.5249 22 6 -0.8818 -3.4148 3.5108 23 8 0.4324 -2.5754 1.1684 24 1 -0.4850 0.8401 -0.0004 25 1 2.9010 -3.5811 -0.8691 26 1 1.7021 -4.6067 -0.0438 27 1 3.7548 -4.4696 1.3110 28 1 3.6675 -2.6911 1.2966 29 1 1.6002 -4.5918 2.4997 30 1 2.7313 -3.5567 3.4063 31 1 1.2232 -1.0572 4.6890 32 1 -0.3491 -1.1608 6.5805 33 1 -2.2605 -2.7114 6.5100 34 1 -1.0325 -4.0459 2.6474 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380966232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -43.437361 kcal Electronic energy + Delta-G solvation = -18300.702437 eV Core-core repulsion = 15416.584059 eV Total energy + Delta-G solvation = -2884.118378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.33795 -37.78290 -36.17377 -32.86554 -32.42986 -31.57964 -30.39560 -28.77020 -25.66107 -23.74822 -22.33829 -22.24678 -20.71341 -18.97366 -16.84134 -16.37029 -15.33541 -15.16565 -14.76725 -14.40806 -13.94267 -13.62767 -13.46471 -13.30240 -13.09111 -12.63600 -12.07405 -11.81757 -11.39700 -11.20270 -11.11948 -11.11502 -10.92919 -10.68143 -10.61824 -10.36128 -10.21309 -9.75619 -9.66931 -8.83347 -8.55839 -8.46912 -8.35175 -7.78165 -6.01191 -4.17151 1.48352 1.62959 2.38279 3.26377 3.33131 3.34289 3.96227 4.37507 4.89490 5.08669 5.21959 5.35378 5.51301 5.61005 5.71581 5.76087 5.82330 5.98634 6.02423 6.18821 6.30700 6.33541 6.45878 6.53573 6.58435 6.63792 6.79194 6.92170 6.97337 7.01265 7.13712 7.18375 7.66300 7.84479 8.18321 8.78230 9.03008 9.55188 11.02776 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.006482 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.972005 B = 4318.317662 C = 4749.378313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.057 0.943 9 C 0.213 3.787 10 H 0.062 0.938 11 C -0.143 4.143 12 C -0.108 4.108 13 C -0.137 4.137 14 C 0.141 3.859 15 H 0.075 0.925 16 C -0.042 4.042 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.038 4.038 21 Cl -0.085 7.085 22 C -0.082 4.082 23 O -0.365 6.365 24 H 0.261 0.739 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -5.810 9.698 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.157 3.843 10 H 0.080 0.920 11 C -0.181 4.181 12 C -0.146 4.146 13 C -0.175 4.175 14 C 0.082 3.918 15 H 0.093 0.907 16 C -0.042 4.042 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.064 4.064 21 Cl -0.057 7.057 22 C -0.101 4.101 23 O -0.284 6.284 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.703 -5.826 9.670 11.312 hybrid contribution 0.598 0.977 -0.035 1.146 sum -0.105 -4.850 9.635 10.787 Atomic orbital electron populations 1.70046 1.05794 1.26520 1.46800 1.25030 0.94652 0.98888 0.94060 0.86844 0.79854 0.83659 0.78734 1.20140 1.21217 1.20192 1.21490 0.93073 0.91095 1.54173 0.92510 1.19725 0.88650 0.90978 0.84948 0.91994 1.22189 0.99283 0.99692 0.96888 1.21437 0.97321 1.00878 0.94928 1.22122 0.98101 0.99216 0.98051 1.20394 0.89698 0.97561 0.84119 0.90736 1.20007 0.95334 0.93820 0.95082 1.21131 0.99711 0.98547 0.93373 1.20966 0.94644 0.98731 0.98841 1.20897 0.99110 0.96908 0.97405 1.20919 0.91775 0.96463 0.97263 1.98336 1.45478 1.63255 1.98594 1.20960 0.93153 0.99156 0.96812 1.87937 1.34712 1.93535 1.12252 0.92920 0.92500 0.94021 0.93937 0.91239 0.92528 0.92657 0.85590 0.85562 0.85669 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.45 12.84 55.43 0.71 -23.74 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 3 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.56 -14.65 6.60 -34.44 -0.23 -14.87 16 8 H 0.06 1.46 6.87 -52.49 -0.36 1.10 16 9 C 0.21 5.23 3.16 -27.83 -0.09 5.14 16 10 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 11 C -0.14 -2.90 5.59 -26.59 -0.15 -3.05 16 12 C -0.11 -1.99 5.78 -26.55 -0.15 -2.15 16 13 C -0.14 -2.47 5.40 -26.60 -0.14 -2.62 16 14 C 0.14 2.96 2.58 -27.84 -0.07 2.88 16 15 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 16 C -0.04 -0.79 4.97 -104.63 -0.52 -1.31 16 17 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 18 C -0.11 -1.59 10.05 -39.59 -0.40 -1.99 16 19 C -0.12 -1.77 9.83 -39.55 -0.39 -2.16 16 20 C -0.04 -0.61 6.32 -39.50 -0.25 -0.86 16 21 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.74 16 22 C -0.08 -1.49 9.14 -39.55 -0.36 -1.85 16 23 O -0.37 -8.97 8.95 -35.23 -0.32 -9.28 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.35 6.86 -51.93 -0.36 1.00 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.13 1.89 8.04 -52.49 -0.42 1.47 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.14 2.56 7.77 -52.49 -0.41 2.15 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -28.08 295.86 -9.32 -37.40 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.42 Total: 1.23 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.23 Total: -22.94 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.71 Total: -23.74 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.32 Total: -9.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.08 -9.32 -37.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380966232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.035 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds