Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48502 * 109.46976 * 240.00197 * 3 2 1 5 5 H 1.48504 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47367 * 120.00263 * 3 2 1 7 7 C 1.37876 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00036 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49050 * 59.96990 * 9 7 2 11 11 C 1.53091 * 109.48007 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.21206 * 62.40622 * 11 9 7 13 13 C 1.53174 * 109.03724 * 56.94941 * 12 11 9 14 14 C 1.53084 * 109.16456 * 303.01556 * 13 12 11 15 15 H 1.08997 * 109.48095 * 297.62758 * 14 13 12 16 16 C 1.50703 * 109.48277 * 177.60348 * 14 13 12 17 17 C 1.38261 * 119.99039 * 100.00146 * 16 14 13 18 18 C 1.38226 * 120.02356 * 180.02562 * 17 16 14 19 19 C 1.38235 * 120.01535 * 359.97438 * 18 17 16 20 20 C 1.38333 * 119.98482 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.01423 * 180.02562 * 20 19 18 22 22 C 1.38198 * 119.99255 * 279.72306 * 16 14 13 23 23 O 1.42906 * 109.41372 * 57.61236 * 14 13 12 24 24 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52401 * 302.46775 * 11 9 7 26 26 H 1.09004 * 109.52068 * 182.34420 * 11 9 7 27 27 H 1.09004 * 109.53956 * 176.81728 * 12 11 9 28 28 H 1.08997 * 109.54550 * 296.98990 * 12 11 9 29 29 H 1.09007 * 109.52410 * 62.92341 * 13 12 11 30 30 H 1.09003 * 109.52246 * 183.11215 * 13 12 11 31 31 H 1.08001 * 119.99020 * 359.97438 * 17 16 14 32 32 H 1.07992 * 119.99353 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.01018 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00471 * 0.02562 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5568 -0.8899 11 6 2.2458 -3.6629 -0.0018 12 6 3.0836 -3.6113 1.2795 13 6 2.1468 -3.6487 2.4908 14 6 1.1571 -2.4846 2.3967 15 1 1.7016 -1.5410 2.4286 16 6 0.1943 -2.5487 3.5543 17 6 0.3845 -1.7368 4.6572 18 6 -0.4979 -1.7954 5.7195 19 6 -1.5714 -2.6654 5.6797 20 6 -1.7627 -3.4772 4.5760 21 17 -3.1110 -4.5696 4.5249 22 6 -0.8818 -3.4148 3.5108 23 8 0.4324 -2.5754 1.1684 24 1 -0.4850 0.8401 -0.0004 25 1 2.9010 -3.5811 -0.8691 26 1 1.7021 -4.6067 -0.0438 27 1 3.7548 -4.4696 1.3110 28 1 3.6675 -2.6911 1.2966 29 1 1.6002 -4.5918 2.4997 30 1 2.7313 -3.5567 3.4063 31 1 1.2232 -1.0572 4.6890 32 1 -0.3491 -1.1608 6.5805 33 1 -2.2605 -2.7114 6.5100 34 1 -1.0325 -4.0459 2.6474 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380966232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -57.458953 kcal Electronic energy + Delta-G solvation = -18301.310459 eV Core-core repulsion = 15416.584059 eV Total energy + Delta-G solvation = -2884.726400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75399 -39.32918 -37.38127 -34.72888 -34.08139 -33.22979 -31.63629 -30.32089 -27.55596 -25.30154 -23.97044 -23.55984 -22.12568 -20.70327 -18.39316 -18.02296 -16.79842 -16.66799 -16.50670 -15.97235 -15.52641 -15.24001 -14.97582 -14.61516 -14.54290 -14.15697 -13.67261 -13.43464 -13.01016 -12.78162 -12.60846 -12.51824 -12.43547 -12.33629 -12.16666 -11.87190 -11.76285 -11.49560 -11.27394 -10.71029 -10.47574 -9.91401 -9.69372 -9.43435 -8.07198 -6.28850 0.23067 0.38122 1.17103 1.40178 1.41324 1.48747 2.41056 2.69527 3.13620 3.49521 3.88921 4.01298 4.17723 4.20190 4.27705 4.32384 4.50070 4.53090 4.62009 4.72897 4.80820 4.95494 4.98600 5.10882 5.19467 5.25822 5.32806 5.37448 5.41179 5.49339 5.60999 5.75650 5.83142 5.90460 6.17757 6.78028 7.15098 7.48359 8.96634 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.006482 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.972005 B = 4318.317662 C = 4749.378313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.206 3.794 10 H 0.024 0.976 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.141 3.859 15 H 0.045 0.955 16 C -0.069 4.069 17 C -0.119 4.119 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.045 4.045 21 Cl -0.074 7.074 22 C -0.101 4.101 23 O -0.389 6.389 24 H 0.258 0.742 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -5.777 11.963 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.078 0.922 9 C 0.150 3.850 10 H 0.041 0.959 11 C -0.174 4.174 12 C -0.142 4.142 13 C -0.168 4.168 14 C 0.083 3.917 15 H 0.063 0.937 16 C -0.069 4.069 17 C -0.137 4.137 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.071 4.071 21 Cl -0.046 7.046 22 C -0.120 4.120 23 O -0.309 6.309 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.153 0.847 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.160 -5.806 11.936 13.274 hybrid contribution 0.273 0.920 -0.700 1.187 sum 0.434 -4.886 11.236 12.260 Atomic orbital electron populations 1.70200 1.07405 1.26972 1.48670 1.25774 0.95307 1.02257 0.93874 0.85853 0.78601 0.79516 0.79148 1.19459 1.21393 1.19150 1.21767 0.93207 0.91957 1.53012 0.92235 1.19622 0.88733 0.92451 0.84199 0.95858 1.22069 0.98676 0.98181 0.98489 1.21425 0.97300 1.01715 0.93747 1.22065 0.97593 0.98100 0.99022 1.20443 0.90550 0.97319 0.83406 0.93711 1.19954 0.95843 0.95712 0.95399 1.21342 1.00764 0.98217 0.93416 1.21392 0.93212 0.98251 0.98979 1.21319 0.99334 0.95514 0.97332 1.21035 0.91753 0.97061 0.97290 1.98336 1.44691 1.62945 1.98590 1.20827 0.94182 0.99727 0.97258 1.87861 1.35889 1.93724 1.13447 0.93321 0.91973 0.93041 0.90569 0.92465 0.92059 0.90221 0.84730 0.81573 0.82465 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.95 12.84 21.45 0.28 -52.68 16 2 C 0.03 1.67 5.40 84.65 0.46 2.12 16 3 Si 0.94 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.56 -30.01 6.60 25.60 0.17 -29.84 16 8 H 0.06 3.08 6.87 -2.91 -0.02 3.06 16 9 C 0.21 10.51 3.16 29.88 0.09 10.61 16 10 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 11 C -0.14 -5.55 5.59 30.68 0.17 -5.37 16 12 C -0.10 -3.71 5.78 30.71 0.18 -3.53 16 13 C -0.13 -4.58 5.40 30.68 0.17 -4.41 16 14 C 0.14 6.02 2.58 29.88 0.08 6.10 16 15 H 0.04 2.14 6.95 -2.39 -0.02 2.13 16 16 C -0.07 -2.59 4.97 -19.87 -0.10 -2.69 16 17 C -0.12 -3.73 9.67 22.27 0.22 -3.51 16 18 C -0.10 -2.48 10.05 22.27 0.22 -2.26 16 19 C -0.12 -2.95 9.83 22.29 0.22 -2.73 16 20 C -0.04 -1.38 6.32 22.33 0.14 -1.24 16 21 Cl -0.07 -2.06 28.96 -2.72 -0.08 -2.14 16 22 C -0.10 -3.70 9.14 22.29 0.20 -3.50 16 23 O -0.39 -19.93 8.95 -148.98 -1.33 -21.26 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.06 2.17 6.86 -2.39 -0.02 2.15 16 29 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.13 3.86 8.04 -2.91 -0.02 3.84 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.12 4.59 7.77 -2.91 -0.02 4.57 16 Total: -1.00 -62.44 295.86 4.19 -58.25 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.09 Total: 13.28 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 2.22 Total: -40.26 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.28 Total: -52.68 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.33 Total: -21.26 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -62.44 4.19 -58.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380966232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.788 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds