Wall clock time and date at job start Mon Mar 30 2020 06:30:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1
5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1
6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1
9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1
10 10 H 1.08997 * 109.48693 * 59.97461 * 9 7 2
11 11 C 1.53100 * 109.47731 * 180.02562 * 9 7 2
12 12 C 1.53184 * 109.16210 * 177.59136 * 11 9 7
13 13 C 1.53177 * 109.03202 * 303.01623 * 12 11 9
14 14 C 1.53086 * 109.16559 * 56.98236 * 13 12 11
15 15 H 1.08997 * 109.48099 * 62.38662 * 14 13 12
16 16 C 1.50706 * 109.48170 * 182.40709 * 14 13 12
17 17 C 1.38265 * 119.99451 * 265.00177 * 16 14 13
18 18 C 1.38218 * 120.02536 * 179.97438 * 17 16 14
19 19 C 1.38234 * 120.01566 * 359.97438 * 18 17 16
20 20 C 1.38334 * 119.98446 * 0.02562 * 19 18 17
21 21 Cl 1.73594 * 120.01029 * 179.97438 * 20 19 18
22 22 C 1.38190 * 119.99408 * 84.72616 * 16 14 13
23 23 O 1.42900 * 109.41933 * 302.38787 * 14 13 12
24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
25 25 H 1.08997 * 109.51770 * 297.48933 * 11 9 7
26 26 H 1.08995 * 109.52378 * 57.61705 * 11 9 7
27 27 H 1.08993 * 109.54468 * 62.87788 * 12 11 9
28 28 H 1.08996 * 109.54252 * 183.06108 * 12 11 9
29 29 H 1.09001 * 109.52483 * 176.88940 * 13 12 11
30 30 H 1.09004 * 109.52249 * 297.00960 * 13 12 11
31 31 H 1.07997 * 119.98452 * 0.02562 * 17 16 14
32 32 H 1.08007 * 119.99175 * 180.02562 * 18 17 16
33 33 H 1.07994 * 120.00367 * 179.97438 * 19 18 17
34 34 H 1.08005 * 120.00771 * 0.02562 * 22 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4401 -0.7001
6 1 1.4467 2.6526 -0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 6 3.5115 -1.1941 0.0000
10 1 3.8748 -0.6805 0.8902
11 6 4.0221 -2.6374 -0.0014
12 6 5.5527 -2.6293 -0.0616
13 6 5.9996 -1.8534 -1.3044
14 6 5.4127 -0.4405 -1.2527
15 1 5.8011 0.0828 -0.3790
16 6 5.7992 0.3103 -2.5010
17 6 6.9132 1.1292 -2.4980
18 6 7.2686 1.8176 -3.6427
19 6 6.5107 1.6874 -4.7913
20 6 5.3960 0.8681 -4.7949
21 17 4.4433 0.7046 -6.2368
22 6 5.0434 0.1756 -3.6500
23 8 3.9885 -0.5204 -1.1665
24 1 -0.4850 0.8401 0.0004
25 1 3.6961 -3.1399 0.9093
26 1 3.6252 -3.1634 -0.8696
27 1 5.9502 -2.1474 0.8316
28 1 5.9208 -3.6537 -0.1177
29 1 7.0878 -1.7952 -1.3257
30 1 5.6445 -2.3639 -2.1997
31 1 7.5064 1.2304 -1.6012
32 1 8.1392 2.4569 -3.6399
33 1 6.7883 2.2257 -5.6855
34 1 4.1756 -0.4672 -3.6535
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000380966264.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:30:50
Heat of formation + Delta-G solvation = -55.157917 kcal
Electronic energy + Delta-G solvation = -18204.484840 eV
Core-core repulsion = 15319.858220 eV
Total energy + Delta-G solvation = -2884.626620 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.88919 -39.44207 -37.41941 -35.05196 -34.32783 -33.45689 -31.67030 -30.73718
-27.71706 -25.46743 -23.70172 -23.47408 -22.11934 -20.92978 -19.01824 -18.08780
-17.12311 -16.98079 -16.43057 -15.99444 -15.63501 -15.40915 -15.02914 -14.74102
-14.53627 -14.47015 -14.08466 -13.63583 -13.00185 -12.95151 -12.57392 -12.53152
-12.37795 -12.27794 -12.03277 -11.94150 -11.80136 -11.57016 -11.34131 -10.98795
-10.73081 -10.07186 -9.75330 -9.52019 -8.36730 -6.48938 0.18308 0.32982
1.15999 1.34311 1.39828 1.65681 2.41099 2.62733 2.86307 3.38903
3.77972 3.96879 4.06809 4.09590 4.13592 4.27020 4.33526 4.37664
4.49434 4.54396 4.66904 4.82213 4.91180 4.99398 5.03681 5.10561
5.20232 5.25024 5.30268 5.37205 5.49971 5.57739 5.65061 5.87440
6.22654 6.55265 6.88687 7.28306 8.77314
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.016746 B = 0.007606 C = 0.006444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1671.686099 B = 3680.505421 C = 4343.831615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.940 5.940
2 C 0.027 3.973
3 Si 0.934 3.066
4 H -0.276 1.276
5 H -0.205 1.205
6 H -0.300 1.300
7 C -0.526 4.526
8 H 0.039 0.961
9 C 0.189 3.811
10 H 0.017 0.983
11 C -0.133 4.133
12 C -0.114 4.114
13 C -0.131 4.131
14 C 0.109 3.891
15 H 0.067 0.933
16 C -0.074 4.074
17 C -0.110 4.110
18 C -0.099 4.099
19 C -0.115 4.115
20 C -0.050 4.050
21 Cl -0.081 7.081
22 C -0.107 4.107
23 O -0.394 6.394
24 H 0.267 0.733
25 H 0.063 0.937
26 H 0.045 0.955
27 H 0.073 0.927
28 H 0.083 0.917
29 H 0.096 0.904
30 H 0.056 0.944
31 H 0.155 0.845
32 H 0.172 0.828
33 H 0.155 0.845
34 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.000 3.029 -6.839 21.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.172 4.172
3 Si 0.758 3.242
4 H -0.202 1.202
5 H -0.127 1.127
6 H -0.227 1.227
7 C -0.563 4.563
8 H 0.058 0.942
9 C 0.133 3.867
10 H 0.035 0.965
11 C -0.171 4.171
12 C -0.151 4.151
13 C -0.169 4.169
14 C 0.052 3.948
15 H 0.085 0.915
16 C -0.075 4.075
17 C -0.128 4.128
18 C -0.117 4.117
19 C -0.134 4.134
20 C -0.076 4.076
21 Cl -0.052 7.052
22 C -0.126 4.126
23 O -0.314 6.314
24 H 0.075 0.925
25 H 0.081 0.919
26 H 0.064 0.936
27 H 0.091 0.909
28 H 0.101 0.899
29 H 0.114 0.886
30 H 0.075 0.925
31 H 0.172 0.828
32 H 0.189 0.811
33 H 0.172 0.828
34 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 19.651 3.157 -7.112 21.136
hybrid contribution -1.010 0.258 0.028 1.043
sum 18.641 3.415 -7.084 20.232
Atomic orbital electron populations
1.70067 1.08490 1.28350 1.51011 1.25943 0.95339 1.03676 0.92277
0.86060 0.82248 0.77404 0.78498 1.20183 1.12700 1.22747 1.21245
0.90506 0.93234 1.51302 0.94229 1.19925 0.92041 0.90281 0.84431
0.96540 1.21983 0.96460 0.97419 1.01193 1.21620 0.94136 1.01307
0.98069 1.22084 1.01545 0.94565 0.98673 1.20988 0.84016 0.95417
0.94428 0.91495 1.19844 0.95930 0.97980 0.93709 1.21396 0.95815
0.95188 1.00366 1.21463 1.00261 0.98972 0.90992 1.21364 0.93236
0.97956 1.00811 1.21101 0.96200 1.02199 0.88148 1.98350 1.72279
1.97117 1.37489 1.20896 0.99882 0.99890 0.91939 1.88331 1.18840
1.77718 1.46558 0.92469 0.91858 0.93631 0.90870 0.89853 0.88599
0.92546 0.82765 0.81102 0.82770 0.87192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16
2 C 0.03 1.64 5.47 84.66 0.46 2.10 16
3 Si 0.93 46.30 26.99 68.60 1.85 48.15 16
4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
5 H -0.21 -9.51 5.16 99.48 0.51 -9.00 16
6 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16
7 C -0.53 -30.92 9.38 25.60 0.24 -30.68 16
8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16
9 C 0.19 8.87 1.99 29.88 0.06 8.93 16
10 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16
11 C -0.13 -5.16 5.36 30.69 0.16 -5.00 16
12 C -0.11 -3.24 6.03 30.71 0.19 -3.05 16
13 C -0.13 -3.67 5.40 30.68 0.17 -3.51 16
14 C 0.11 3.66 2.67 29.88 0.08 3.74 16
15 H 0.07 2.07 8.05 -2.39 -0.02 2.06 16
16 C -0.07 -2.27 5.00 -19.87 -0.10 -2.37 16
17 C -0.11 -2.46 9.68 22.27 0.22 -2.24 16
18 C -0.10 -1.83 10.04 22.26 0.22 -1.61 16
19 C -0.12 -2.51 9.83 22.29 0.22 -2.29 16
20 C -0.05 -1.44 6.32 22.32 0.14 -1.30 16
21 Cl -0.08 -2.28 28.96 -2.72 -0.08 -2.36 16
22 C -0.11 -3.62 9.14 22.29 0.20 -3.42 16
23 O -0.39 -17.66 6.09 -148.98 -0.91 -18.56 16
24 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16
25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16
27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16
30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16
32 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16
33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16
34 H 0.11 4.35 7.64 -2.91 -0.02 4.33 16
Total: -1.00 -70.12 294.26 4.31 -65.80
By element:
Atomic # 1 Polarization: 6.91 SS G_CDS: 0.89 Total: 7.79 kcal
Atomic # 6 Polarization: -42.96 SS G_CDS: 2.26 Total: -40.70 kcal
Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal
Atomic # 8 Polarization: -17.66 SS G_CDS: -0.91 Total: -18.56 kcal
Atomic # 14 Polarization: 46.30 SS G_CDS: 1.85 Total: 48.15 kcal
Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal
Total: -70.12 4.31 -65.80 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380966264.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.646 kcal
(2) G-P(sol) polarization free energy of solvation -70.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds