Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.48693 * 59.97461 * 9 7 2 11 11 C 1.53100 * 109.47731 * 180.02562 * 9 7 2 12 12 C 1.53184 * 109.16210 * 177.59136 * 11 9 7 13 13 C 1.53177 * 109.03202 * 303.01623 * 12 11 9 14 14 C 1.53086 * 109.16559 * 56.98236 * 13 12 11 15 15 H 1.08997 * 109.48099 * 62.38662 * 14 13 12 16 16 C 1.50706 * 109.48170 * 182.40709 * 14 13 12 17 17 C 1.38265 * 119.99451 * 265.00177 * 16 14 13 18 18 C 1.38218 * 120.02536 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.01566 * 359.97438 * 18 17 16 20 20 C 1.38334 * 119.98446 * 0.02562 * 19 18 17 21 21 Cl 1.73594 * 120.01029 * 179.97438 * 20 19 18 22 22 C 1.38190 * 119.99408 * 84.72616 * 16 14 13 23 23 O 1.42900 * 109.41933 * 302.38787 * 14 13 12 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.51770 * 297.48933 * 11 9 7 26 26 H 1.08995 * 109.52378 * 57.61705 * 11 9 7 27 27 H 1.08993 * 109.54468 * 62.87788 * 12 11 9 28 28 H 1.08996 * 109.54252 * 183.06108 * 12 11 9 29 29 H 1.09001 * 109.52483 * 176.88940 * 13 12 11 30 30 H 1.09004 * 109.52249 * 297.00960 * 13 12 11 31 31 H 1.07997 * 119.98452 * 0.02562 * 17 16 14 32 32 H 1.08007 * 119.99175 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.00367 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.00771 * 0.02562 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8748 -0.6805 0.8902 11 6 4.0221 -2.6374 -0.0014 12 6 5.5527 -2.6293 -0.0616 13 6 5.9996 -1.8534 -1.3044 14 6 5.4127 -0.4405 -1.2527 15 1 5.8011 0.0828 -0.3790 16 6 5.7992 0.3103 -2.5010 17 6 6.9132 1.1292 -2.4980 18 6 7.2686 1.8176 -3.6427 19 6 6.5107 1.6874 -4.7913 20 6 5.3960 0.8681 -4.7949 21 17 4.4433 0.7046 -6.2368 22 6 5.0434 0.1756 -3.6500 23 8 3.9885 -0.5204 -1.1665 24 1 -0.4850 0.8401 0.0004 25 1 3.6961 -3.1399 0.9093 26 1 3.6252 -3.1634 -0.8696 27 1 5.9502 -2.1474 0.8316 28 1 5.9208 -3.6537 -0.1177 29 1 7.0878 -1.7952 -1.3257 30 1 5.6445 -2.3639 -2.1997 31 1 7.5064 1.2304 -1.6012 32 1 8.1392 2.4569 -3.6399 33 1 6.7883 2.2257 -5.6855 34 1 4.1756 -0.4672 -3.6535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380966264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -55.157917 kcal Electronic energy + Delta-G solvation = -18204.484840 eV Core-core repulsion = 15319.858220 eV Total energy + Delta-G solvation = -2884.626620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88919 -39.44207 -37.41941 -35.05196 -34.32783 -33.45689 -31.67030 -30.73718 -27.71706 -25.46743 -23.70172 -23.47408 -22.11934 -20.92978 -19.01824 -18.08780 -17.12311 -16.98079 -16.43057 -15.99444 -15.63501 -15.40915 -15.02914 -14.74102 -14.53627 -14.47015 -14.08466 -13.63583 -13.00185 -12.95151 -12.57392 -12.53152 -12.37795 -12.27794 -12.03277 -11.94150 -11.80136 -11.57016 -11.34131 -10.98795 -10.73081 -10.07186 -9.75330 -9.52019 -8.36730 -6.48938 0.18308 0.32982 1.15999 1.34311 1.39828 1.65681 2.41099 2.62733 2.86307 3.38903 3.77972 3.96879 4.06809 4.09590 4.13592 4.27020 4.33526 4.37664 4.49434 4.54396 4.66904 4.82213 4.91180 4.99398 5.03681 5.10561 5.20232 5.25024 5.30268 5.37205 5.49971 5.57739 5.65061 5.87440 6.22654 6.55265 6.88687 7.28306 8.77314 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.007606 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.686099 B = 3680.505421 C = 4343.831615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.205 1.205 6 H -0.300 1.300 7 C -0.526 4.526 8 H 0.039 0.961 9 C 0.189 3.811 10 H 0.017 0.983 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.131 4.131 14 C 0.109 3.891 15 H 0.067 0.933 16 C -0.074 4.074 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.115 4.115 20 C -0.050 4.050 21 Cl -0.081 7.081 22 C -0.107 4.107 23 O -0.394 6.394 24 H 0.267 0.733 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.000 3.029 -6.839 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.127 1.127 6 H -0.227 1.227 7 C -0.563 4.563 8 H 0.058 0.942 9 C 0.133 3.867 10 H 0.035 0.965 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.169 4.169 14 C 0.052 3.948 15 H 0.085 0.915 16 C -0.075 4.075 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.134 4.134 20 C -0.076 4.076 21 Cl -0.052 7.052 22 C -0.126 4.126 23 O -0.314 6.314 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.172 0.828 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.651 3.157 -7.112 21.136 hybrid contribution -1.010 0.258 0.028 1.043 sum 18.641 3.415 -7.084 20.232 Atomic orbital electron populations 1.70067 1.08490 1.28350 1.51011 1.25943 0.95339 1.03676 0.92277 0.86060 0.82248 0.77404 0.78498 1.20183 1.12700 1.22747 1.21245 0.90506 0.93234 1.51302 0.94229 1.19925 0.92041 0.90281 0.84431 0.96540 1.21983 0.96460 0.97419 1.01193 1.21620 0.94136 1.01307 0.98069 1.22084 1.01545 0.94565 0.98673 1.20988 0.84016 0.95417 0.94428 0.91495 1.19844 0.95930 0.97980 0.93709 1.21396 0.95815 0.95188 1.00366 1.21463 1.00261 0.98972 0.90992 1.21364 0.93236 0.97956 1.00811 1.21101 0.96200 1.02199 0.88148 1.98350 1.72279 1.97117 1.37489 1.20896 0.99882 0.99890 0.91939 1.88331 1.18840 1.77718 1.46558 0.92469 0.91858 0.93631 0.90870 0.89853 0.88599 0.92546 0.82765 0.81102 0.82770 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.03 1.64 5.47 84.66 0.46 2.10 16 3 Si 0.93 46.30 26.99 68.60 1.85 48.15 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.21 -9.51 5.16 99.48 0.51 -9.00 16 6 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 7 C -0.53 -30.92 9.38 25.60 0.24 -30.68 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 9 C 0.19 8.87 1.99 29.88 0.06 8.93 16 10 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 11 C -0.13 -5.16 5.36 30.69 0.16 -5.00 16 12 C -0.11 -3.24 6.03 30.71 0.19 -3.05 16 13 C -0.13 -3.67 5.40 30.68 0.17 -3.51 16 14 C 0.11 3.66 2.67 29.88 0.08 3.74 16 15 H 0.07 2.07 8.05 -2.39 -0.02 2.06 16 16 C -0.07 -2.27 5.00 -19.87 -0.10 -2.37 16 17 C -0.11 -2.46 9.68 22.27 0.22 -2.24 16 18 C -0.10 -1.83 10.04 22.26 0.22 -1.61 16 19 C -0.12 -2.51 9.83 22.29 0.22 -2.29 16 20 C -0.05 -1.44 6.32 22.32 0.14 -1.30 16 21 Cl -0.08 -2.28 28.96 -2.72 -0.08 -2.36 16 22 C -0.11 -3.62 9.14 22.29 0.20 -3.42 16 23 O -0.39 -17.66 6.09 -148.98 -0.91 -18.56 16 24 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.11 4.35 7.64 -2.91 -0.02 4.33 16 Total: -1.00 -70.12 294.26 4.31 -65.80 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.89 Total: 7.79 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 2.26 Total: -40.70 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.91 Total: -18.56 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.85 Total: 48.15 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -70.12 4.31 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380966264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.646 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds