Wall clock time and date at job start Mon Mar 30 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.82464 * 2 1 4 4 H 1.08004 * 120.00014 * 239.30059 * 3 2 1 5 5 C 1.37873 * 120.00246 * 59.30075 * 3 2 1 6 6 N 1.31514 * 119.99739 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 120.00258 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46967 * 89.99602 * 7 5 3 9 9 H 1.48497 * 109.47300 * 209.99873 * 7 5 3 10 10 H 1.48500 * 109.47041 * 330.00026 * 7 5 3 11 11 C 1.54384 * 109.82696 * 239.10939 * 2 1 3 12 12 C 1.55303 * 102.25384 * 261.84364 * 11 2 1 13 13 C 1.54942 * 100.94169 * 325.86677 * 12 11 2 14 14 H 1.08994 * 110.31587 * 277.52722 * 13 12 11 15 15 C 1.50705 * 110.30497 * 155.45946 * 13 12 11 16 16 C 1.38260 * 119.99215 * 100.00598 * 15 13 12 17 17 C 1.38228 * 120.02552 * 179.97438 * 16 15 13 18 18 C 1.38237 * 120.01124 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98681 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.00933 * 180.02562 * 19 18 17 21 21 C 1.38194 * 119.99200 * 279.72406 * 15 13 12 22 22 O 1.43239 * 109.82914 * 120.98110 * 2 1 3 23 23 H 1.09001 * 109.46801 * 180.88806 * 1 2 3 24 24 H 1.09001 * 109.46998 * 300.88402 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.88694 * 1 2 3 26 26 H 0.97004 * 120.00040 * 180.02562 * 6 5 3 27 27 H 1.09002 * 110.85021 * 20.03674 * 11 2 1 28 28 H 1.09002 * 110.84621 * 143.65005 * 11 2 1 29 29 H 1.09000 * 111.12019 * 83.78948 * 12 11 2 30 30 H 1.09005 * 111.12192 * 207.90355 * 12 11 2 31 31 H 1.08000 * 119.98929 * 359.96821 * 16 15 13 32 32 H 1.07994 * 119.99241 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00480 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.00617 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4176 0.0000 4 1 2.6735 1.7637 -0.8043 5 6 1.7015 2.2729 1.0267 6 7 0.9311 1.8517 2.0057 7 14 2.3344 4.0304 1.0263 8 1 1.3693 4.9039 0.3116 9 1 2.4865 4.5021 2.4261 10 1 3.6507 4.0824 0.3407 11 6 2.0537 -0.7456 -1.2463 12 6 2.3681 -2.1565 -0.6785 13 6 2.8408 -1.7988 0.7531 14 1 3.8899 -1.5036 0.7424 15 6 2.6372 -2.9702 1.6791 16 6 3.7033 -3.7890 2.0024 17 6 3.5175 -4.8633 2.8521 18 6 2.2654 -5.1199 3.3787 19 6 1.1984 -4.3010 3.0555 20 17 -0.3743 -4.6224 3.7169 21 6 1.3863 -3.2223 2.2094 22 8 2.0160 -0.6936 1.1552 23 1 -0.3633 -1.0276 0.0159 24 1 -0.3633 0.5275 0.8820 25 1 -0.3633 0.5000 -0.8978 26 1 0.6918 2.4535 2.7279 27 1 1.2850 -0.8001 -2.0172 28 1 2.9571 -0.2720 -1.6306 29 1 1.4729 -2.7780 -0.6529 30 1 3.1631 -2.6402 -1.2461 31 1 4.6817 -3.5892 1.5909 32 1 4.3506 -5.5027 3.1040 33 1 2.1204 -5.9591 4.0429 34 1 0.5545 -2.5802 1.9600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381095381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:59 Heat of formation + Delta-G solvation = -33.310893 kcal Electronic energy + Delta-G solvation = -18170.126845 eV Core-core repulsion = 15286.447583 eV Total energy + Delta-G solvation = -2883.679262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.47991 -37.95096 -36.21106 -33.21420 -31.40865 -31.07338 -30.47206 -28.88234 -25.34151 -24.72796 -22.46289 -21.99654 -20.29347 -19.37268 -16.83902 -16.46113 -15.77224 -15.30364 -14.66757 -14.37025 -13.98998 -13.52640 -13.42848 -13.20516 -12.54602 -12.16668 -11.95993 -11.79594 -11.37296 -11.23754 -11.09901 -10.93608 -10.87551 -10.77551 -10.55306 -10.42128 -10.21138 -9.96910 -9.57305 -9.12308 -8.62538 -8.48519 -8.43501 -7.87090 -5.94101 -4.11065 1.37587 1.52910 2.34704 3.30393 3.38068 3.40322 3.84430 4.42869 4.81249 4.98914 5.14405 5.30094 5.41158 5.46352 5.50975 5.68112 5.72746 5.89225 6.04562 6.18706 6.24778 6.35944 6.47937 6.50349 6.53619 6.64098 6.79121 6.91400 6.94086 7.04996 7.11380 7.39929 7.79258 8.09774 8.36550 8.61083 9.03502 9.60515 11.07446 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.005815 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.872704 B = 4813.783437 C = 5151.447405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.228 3.772 3 C -0.535 4.535 4 H 0.058 0.942 5 C 0.082 3.918 6 N -0.858 5.858 7 Si 0.887 3.113 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.112 3.888 14 H 0.065 0.935 15 C -0.055 4.055 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.036 4.036 20 Cl -0.081 7.081 21 C -0.080 4.080 22 O -0.343 6.343 23 H 0.011 0.989 24 H 0.090 0.910 25 H 0.036 0.964 26 H 0.259 0.741 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -12.656 -0.076 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.191 3.809 3 C -0.573 4.573 4 H 0.076 0.924 5 C -0.124 4.124 6 N -0.495 5.495 7 Si 0.715 3.285 8 H -0.206 1.206 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.178 4.178 12 C -0.184 4.184 13 C 0.053 3.947 14 H 0.083 0.917 15 C -0.056 4.056 16 C -0.132 4.132 17 C -0.133 4.133 18 C -0.142 4.142 19 C -0.063 4.063 20 Cl -0.052 7.052 21 C -0.098 4.098 22 O -0.262 6.262 23 H 0.030 0.970 24 H 0.109 0.891 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.179 -12.563 0.365 12.756 hybrid contribution 0.278 0.883 -0.035 0.926 sum 2.457 -11.681 0.330 11.941 Atomic orbital electron populations 1.21989 0.97320 0.97639 1.02742 1.19673 0.91019 0.90389 0.79864 1.21260 1.32766 0.94762 1.08516 0.92357 1.24997 0.94166 0.98073 0.95146 1.69947 1.34272 1.35046 1.10205 0.86699 0.79391 0.85163 0.77276 1.20637 1.21168 1.19912 1.23238 1.00990 0.93723 0.99889 1.23242 1.00753 0.98468 0.95916 1.21589 0.96349 0.86184 0.90589 0.91684 1.20153 0.92476 0.95961 0.97007 1.21079 0.98757 0.95196 0.98176 1.20964 0.96389 0.97998 0.97901 1.20936 0.91955 0.99865 1.01450 1.20940 0.86505 0.98502 1.00343 1.98348 1.26675 1.95211 1.84964 1.21043 0.98784 0.94862 0.95125 1.88807 1.65468 1.39580 1.32357 0.96982 0.89111 0.94516 0.93048 0.91996 0.91606 0.91453 0.91651 0.85657 0.85520 0.85570 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.51 37.16 0.32 -3.02 16 2 C 0.23 5.56 0.82 -91.05 -0.07 5.48 16 3 C -0.54 -14.50 8.22 -34.45 -0.28 -14.79 16 4 H 0.06 1.55 7.52 -52.48 -0.39 1.16 16 5 C 0.08 2.25 5.26 -17.82 -0.09 2.15 16 6 N -0.86 -24.52 10.92 55.43 0.61 -23.92 16 7 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 C -0.14 -2.83 6.07 -24.79 -0.15 -2.98 16 12 C -0.15 -2.56 6.56 -24.49 -0.16 -2.72 16 13 C 0.11 2.20 3.64 -26.86 -0.10 2.10 16 14 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 15 C -0.06 -0.97 5.03 -104.63 -0.53 -1.50 16 16 C -0.11 -1.64 9.69 -39.58 -0.38 -2.02 16 17 C -0.11 -1.44 10.05 -39.59 -0.40 -1.84 16 18 C -0.12 -1.65 9.83 -39.55 -0.39 -2.04 16 19 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 16 20 Cl -0.08 -1.18 28.96 -51.86 -1.50 -2.69 16 21 C -0.08 -1.43 9.16 -39.55 -0.36 -1.79 16 22 O -0.34 -8.51 9.10 -35.23 -0.32 -8.83 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.43 6.02 -51.93 -0.31 2.12 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 28 H 0.07 1.31 7.66 -51.93 -0.40 0.92 16 29 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.14 2.80 7.68 -52.49 -0.40 2.40 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -28.95 298.71 -9.01 -37.96 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.42 Total: 0.69 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.85 Total: -23.79 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.61 Total: -23.92 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.32 Total: -8.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.95 -9.01 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.646 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds