Wall clock time and date at job start Mon Mar 30 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.82464 * 2 1 4 4 H 1.08004 * 120.00014 * 239.30059 * 3 2 1 5 5 C 1.37873 * 120.00246 * 59.30075 * 3 2 1 6 6 N 1.31514 * 119.99739 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 120.00258 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46967 * 89.99602 * 7 5 3 9 9 H 1.48497 * 109.47300 * 209.99873 * 7 5 3 10 10 H 1.48500 * 109.47041 * 330.00026 * 7 5 3 11 11 C 1.54384 * 109.82696 * 239.10939 * 2 1 3 12 12 C 1.55303 * 102.25384 * 261.84364 * 11 2 1 13 13 C 1.54942 * 100.94169 * 325.86677 * 12 11 2 14 14 H 1.08994 * 110.31587 * 277.52722 * 13 12 11 15 15 C 1.50705 * 110.30497 * 155.45946 * 13 12 11 16 16 C 1.38260 * 119.99215 * 100.00598 * 15 13 12 17 17 C 1.38228 * 120.02552 * 179.97438 * 16 15 13 18 18 C 1.38237 * 120.01124 * 0.02562 * 17 16 15 19 19 C 1.38335 * 119.98681 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.00933 * 180.02562 * 19 18 17 21 21 C 1.38194 * 119.99200 * 279.72406 * 15 13 12 22 22 O 1.43239 * 109.82914 * 120.98110 * 2 1 3 23 23 H 1.09001 * 109.46801 * 180.88806 * 1 2 3 24 24 H 1.09001 * 109.46998 * 300.88402 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.88694 * 1 2 3 26 26 H 0.97004 * 120.00040 * 180.02562 * 6 5 3 27 27 H 1.09002 * 110.85021 * 20.03674 * 11 2 1 28 28 H 1.09002 * 110.84621 * 143.65005 * 11 2 1 29 29 H 1.09000 * 111.12019 * 83.78948 * 12 11 2 30 30 H 1.09005 * 111.12192 * 207.90355 * 12 11 2 31 31 H 1.08000 * 119.98929 * 359.96821 * 16 15 13 32 32 H 1.07994 * 119.99241 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00480 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.00617 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4176 0.0000 4 1 2.6735 1.7637 -0.8043 5 6 1.7015 2.2729 1.0267 6 7 0.9311 1.8517 2.0057 7 14 2.3344 4.0304 1.0263 8 1 1.3693 4.9039 0.3116 9 1 2.4865 4.5021 2.4261 10 1 3.6507 4.0824 0.3407 11 6 2.0537 -0.7456 -1.2463 12 6 2.3681 -2.1565 -0.6785 13 6 2.8408 -1.7988 0.7531 14 1 3.8899 -1.5036 0.7424 15 6 2.6372 -2.9702 1.6791 16 6 3.7033 -3.7890 2.0024 17 6 3.5175 -4.8633 2.8521 18 6 2.2654 -5.1199 3.3787 19 6 1.1984 -4.3010 3.0555 20 17 -0.3743 -4.6224 3.7169 21 6 1.3863 -3.2223 2.2094 22 8 2.0160 -0.6936 1.1552 23 1 -0.3633 -1.0276 0.0159 24 1 -0.3633 0.5275 0.8820 25 1 -0.3633 0.5000 -0.8978 26 1 0.6918 2.4535 2.7279 27 1 1.2850 -0.8001 -2.0172 28 1 2.9571 -0.2720 -1.6306 29 1 1.4729 -2.7780 -0.6529 30 1 3.1631 -2.6402 -1.2461 31 1 4.6817 -3.5892 1.5909 32 1 4.3506 -5.5027 3.1040 33 1 2.1204 -5.9591 4.0429 34 1 0.5545 -2.5802 1.9600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381095381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:58 Heat of formation + Delta-G solvation = -48.206824 kcal Electronic energy + Delta-G solvation = -18170.772781 eV Core-core repulsion = 15286.447583 eV Total energy + Delta-G solvation = -2884.325198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84894 -39.42239 -37.38752 -35.07395 -32.94894 -32.76721 -31.63510 -30.47596 -27.33784 -26.32666 -23.71461 -23.33062 -21.67490 -21.19018 -18.43166 -18.03345 -17.25069 -16.63903 -16.40203 -15.79772 -15.52136 -15.11519 -14.58317 -14.50998 -14.16110 -13.90704 -13.67614 -13.13495 -13.00182 -12.80162 -12.71526 -12.42628 -12.39053 -12.30072 -12.13779 -12.09930 -11.86343 -11.52302 -11.26736 -10.94396 -10.55145 -9.93724 -9.70635 -9.50518 -8.00334 -6.24207 0.22300 0.36641 1.18194 1.41044 1.42426 1.51668 2.44109 2.66893 3.13760 3.57106 3.80361 3.92225 4.02600 4.16237 4.27001 4.32985 4.48188 4.61335 4.65140 4.79094 4.83626 4.94514 4.98015 5.04799 5.11278 5.18447 5.29243 5.34652 5.42084 5.47838 5.65616 5.75892 5.91188 6.12346 6.35872 6.68608 7.14621 7.52190 8.99553 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.005815 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.872704 B = 4813.783437 C = 5151.447405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.213 3.787 3 C -0.552 4.552 4 H 0.056 0.944 5 C 0.032 3.968 6 N -0.889 5.889 7 Si 0.947 3.053 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.268 1.268 11 C -0.137 4.137 12 C -0.131 4.131 13 C 0.103 3.897 14 H 0.065 0.935 15 C -0.076 4.076 16 C -0.112 4.112 17 C -0.099 4.099 18 C -0.117 4.117 19 C -0.047 4.047 20 Cl -0.080 7.080 21 C -0.105 4.105 22 O -0.377 6.377 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.256 0.744 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -14.499 -0.300 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.176 3.824 3 C -0.590 4.590 4 H 0.074 0.926 5 C -0.170 4.170 6 N -0.527 5.527 7 Si 0.773 3.227 8 H -0.199 1.199 9 H -0.214 1.214 10 H -0.193 1.193 11 C -0.175 4.175 12 C -0.168 4.168 13 C 0.045 3.955 14 H 0.083 0.917 15 C -0.077 4.077 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.135 4.135 19 C -0.074 4.074 20 Cl -0.051 7.051 21 C -0.124 4.124 22 O -0.298 6.298 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.042 -14.411 0.125 14.967 hybrid contribution -0.280 1.374 0.064 1.404 sum 3.762 -13.036 0.190 13.570 Atomic orbital electron populations 1.21861 0.97870 0.97895 1.01271 1.19735 0.90846 0.90045 0.81770 1.21678 1.32412 0.96640 1.08273 0.92608 1.25737 0.94495 1.01798 0.94980 1.70115 1.35625 1.36116 1.10803 0.85746 0.79071 0.80812 0.77050 1.19903 1.21361 1.19269 1.23136 1.01127 0.94804 0.98393 1.23168 1.01870 0.97014 0.94748 1.21787 0.95480 0.85746 0.92503 0.91748 1.20053 0.93396 0.96268 0.97945 1.21376 0.98687 0.94907 0.98033 1.21448 0.97195 0.97236 0.95840 1.21350 0.91416 0.99751 1.00980 1.21061 0.87441 0.98525 1.00348 1.98343 1.26837 1.95099 1.84820 1.20829 0.98286 0.95923 0.97317 1.88723 1.66400 1.41530 1.33108 0.95710 0.92404 0.94037 0.93457 0.90769 0.91615 0.91342 0.88234 0.83258 0.81184 0.82638 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.51 71.98 0.61 -5.89 16 2 C 0.21 10.62 0.82 -11.07 -0.01 10.61 16 3 C -0.55 -30.46 8.22 25.60 0.21 -30.25 16 4 H 0.06 3.00 7.52 -2.91 -0.02 2.98 16 5 C 0.03 1.80 5.26 84.65 0.45 2.24 16 6 N -0.89 -52.65 10.92 21.45 0.23 -52.42 16 7 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 8 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C -0.14 -5.42 6.07 31.85 0.19 -5.23 16 12 C -0.13 -4.40 6.56 32.05 0.21 -4.19 16 13 C 0.10 4.03 3.64 30.51 0.11 4.14 16 14 H 0.06 2.46 8.06 -2.39 -0.02 2.44 16 15 C -0.08 -2.61 5.03 -19.87 -0.10 -2.71 16 16 C -0.11 -2.89 9.69 22.27 0.22 -2.67 16 17 C -0.10 -2.07 10.05 22.27 0.22 -1.85 16 18 C -0.12 -2.74 9.83 22.29 0.22 -2.52 16 19 C -0.05 -1.44 6.32 22.32 0.14 -1.30 16 20 Cl -0.08 -2.31 28.96 -2.72 -0.08 -2.39 16 21 C -0.10 -3.81 9.16 22.29 0.20 -3.60 16 22 O -0.38 -19.29 9.10 -148.98 -1.36 -20.65 16 23 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 3.25 6.02 -2.39 -0.01 3.23 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 28 H 0.07 2.56 7.66 -2.39 -0.02 2.55 16 29 H 0.07 2.28 8.05 -2.39 -0.02 2.26 16 30 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.11 4.52 7.68 -2.91 -0.02 4.50 16 Total: -1.00 -64.85 298.71 4.59 -60.26 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.09 Total: 12.36 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 2.68 Total: -43.20 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.23 Total: -52.42 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.36 Total: -20.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -64.85 4.59 -60.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.049 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds