Wall clock time and date at job start Mon Mar 30 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.87171 * 2 1 4 4 H 1.07994 * 120.00010 * 114.39521 * 3 2 1 5 5 C 1.37881 * 119.99537 * 294.39691 * 3 2 1 6 6 N 1.31516 * 119.99373 * 161.62201 * 5 3 2 7 7 Si 1.86801 * 120.00365 * 341.61740 * 5 3 2 8 8 H 1.48495 * 109.46848 * 180.02562 * 7 5 3 9 9 H 1.48501 * 109.46455 * 60.00300 * 7 5 3 10 10 H 1.48499 * 109.47092 * 300.00878 * 7 5 3 11 11 C 1.54097 * 109.87630 * 121.00664 * 2 1 3 12 12 C 1.55133 * 104.03405 * 117.59155 * 11 2 1 13 13 C 1.54994 * 102.09229 * 338.99939 * 12 11 2 14 14 H 1.08997 * 110.75429 * 278.54535 * 13 12 11 15 15 C 1.50704 * 110.61812 * 155.60736 * 13 12 11 16 16 C 1.38267 * 119.99448 * 284.20335 * 15 13 12 17 17 C 1.38219 * 120.02252 * 179.76690 * 16 15 13 18 18 C 1.38238 * 120.01355 * 0.50829 * 17 16 15 19 19 C 1.38329 * 119.98826 * 359.74350 * 18 17 16 20 20 Cl 1.73602 * 120.01097 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99053 * 104.47880 * 15 13 12 22 22 O 1.43747 * 109.87921 * 238.99124 * 2 1 3 23 23 H 1.09001 * 109.46825 * 53.68210 * 1 2 3 24 24 H 1.08994 * 109.47068 * 173.67847 * 1 2 3 25 25 H 1.08999 * 109.46986 * 293.68337 * 1 2 3 26 26 H 0.96996 * 120.00272 * 354.90435 * 6 5 3 27 27 H 1.09004 * 110.48550 * 236.22224 * 11 2 1 28 28 H 1.08993 * 110.49056 * 358.86669 * 11 2 1 29 29 H 1.09009 * 110.83422 * 220.83765 * 12 11 2 30 30 H 1.08997 * 111.01508 * 97.24588 * 12 11 2 31 31 H 1.07994 * 119.98657 * 359.97438 * 16 15 13 32 32 H 1.08005 * 119.98903 * 180.25714 * 17 16 15 33 33 H 1.08001 * 120.00171 * 179.76799 * 18 17 16 34 34 H 1.07999 * 120.00913 * 359.95468 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 1 2.5891 1.7938 0.8518 5 6 1.8127 2.2332 -1.0875 6 7 1.9238 3.5380 -0.9656 7 14 1.3441 1.4855 -2.7339 8 1 1.1542 2.5676 -3.7329 9 1 0.0807 0.7188 -2.5876 10 1 2.4253 0.5754 -3.1900 11 6 2.0539 -0.7465 1.2421 12 6 2.8374 -1.9499 0.6551 13 6 2.2314 -2.0696 -0.7665 14 1 1.2862 -2.6117 -0.7391 15 6 3.2015 -2.7443 -1.7018 16 6 4.2903 -2.0459 -2.1902 17 6 5.1830 -2.6657 -3.0443 18 6 4.9819 -3.9810 -3.4190 19 6 3.8900 -4.6787 -2.9348 20 17 3.6374 -6.3308 -3.4043 21 6 2.9995 -4.0593 -2.0756 22 8 2.0188 -0.6964 -1.1586 23 1 -0.3633 0.6087 -0.8281 24 1 -0.3633 -1.0214 -0.1131 25 1 -0.3633 0.4128 0.9411 26 1 2.0943 3.9310 -0.0954 27 1 2.7175 -0.1044 1.8214 28 1 1.2237 -1.0928 1.8575 29 1 2.6507 -2.8540 1.2348 30 1 3.9048 -1.7350 0.6061 31 1 4.4450 -1.0168 -1.9016 32 1 6.0355 -2.1208 -3.4222 33 1 5.6776 -4.4639 -4.0893 34 1 2.1470 -4.6036 -1.6970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381095382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:04 Heat of formation + Delta-G solvation = -34.539669 kcal Electronic energy + Delta-G solvation = -18233.353702 eV Core-core repulsion = 15349.621157 eV Total energy + Delta-G solvation = -2883.732546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69365 -38.29408 -36.42494 -33.28842 -31.79857 -31.32174 -30.60937 -29.33283 -25.69871 -24.36038 -22.56979 -22.20227 -20.43123 -19.30887 -17.63585 -16.96045 -15.94836 -15.44693 -14.62635 -14.48164 -13.83769 -13.67090 -13.58899 -13.30076 -13.05022 -12.77797 -12.40693 -11.89230 -11.74472 -11.39902 -11.33741 -11.06098 -11.01252 -10.95948 -10.48194 -10.25939 -10.11207 -9.96443 -9.36471 -9.24223 -8.80596 -8.54765 -8.40804 -8.25632 -6.47262 -4.20084 1.28735 1.33810 2.11936 3.57629 3.58235 3.72420 3.87531 4.57928 4.64538 4.90217 5.01607 5.20128 5.31140 5.33589 5.48041 5.49221 5.51390 5.69443 5.88581 5.97554 6.06530 6.10544 6.26039 6.29237 6.45313 6.49086 6.54496 6.58866 6.63868 6.83319 6.87352 6.93439 7.32834 7.96006 8.13290 8.31963 8.85678 9.53714 10.88614 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.005983 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.425346 B = 4678.797224 C = 5058.215321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.193 3.807 3 C -0.596 4.596 4 H 0.063 0.937 5 C 0.046 3.954 6 N -0.897 5.897 7 Si 1.064 2.936 8 H -0.305 1.305 9 H -0.280 1.280 10 H -0.273 1.273 11 C -0.130 4.130 12 C -0.139 4.139 13 C 0.108 3.892 14 H 0.066 0.934 15 C -0.057 4.057 16 C -0.083 4.083 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.039 4.039 20 Cl -0.083 7.083 21 C -0.107 4.107 22 O -0.365 6.365 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.268 0.732 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -15.979 -1.789 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.156 3.844 3 C -0.632 4.632 4 H 0.081 0.919 5 C -0.161 4.161 6 N -0.530 5.530 7 Si 0.895 3.105 8 H -0.233 1.233 9 H -0.207 1.207 10 H -0.199 1.199 11 C -0.168 4.168 12 C -0.176 4.176 13 C 0.050 3.950 14 H 0.084 0.916 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.136 4.136 19 C -0.065 4.065 20 Cl -0.054 7.054 21 C -0.126 4.126 22 O -0.287 6.287 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.294 -15.646 -3.582 16.385 hybrid contribution 0.262 -0.642 1.819 1.947 sum 3.556 -16.288 -1.763 16.765 Atomic orbital electron populations 1.22470 0.98226 0.98787 1.01862 1.20197 0.90340 0.92494 0.81390 1.21909 1.41592 0.93487 1.06223 0.91877 1.25901 0.92602 0.94218 1.03385 1.70901 1.43387 1.11035 1.27676 0.83740 0.77939 0.74021 0.74782 1.23306 1.20665 1.19937 1.22975 0.98924 0.95744 0.99150 1.23121 1.00769 0.98498 0.95258 1.21775 0.94588 0.87124 0.91499 0.91584 1.19831 0.95894 0.92711 0.97338 1.21353 0.92758 1.00887 0.95095 1.21164 0.99787 0.93969 0.98075 1.20991 0.96877 0.94855 1.00887 1.20768 0.98390 0.85970 1.01396 1.98345 1.96615 1.19022 1.91400 1.20827 0.99237 0.94732 0.97758 1.88955 1.86213 1.16827 1.36664 0.92223 0.95515 0.92923 0.92241 0.91122 0.92606 0.91668 0.90948 0.84141 0.85116 0.85360 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.31 37.16 0.31 -3.07 16 2 C 0.19 4.44 0.70 -91.20 -0.06 4.38 16 3 C -0.60 -16.32 8.63 -34.44 -0.30 -16.62 16 4 H 0.06 1.84 7.60 -52.49 -0.40 1.44 16 5 C 0.05 1.32 5.29 -17.82 -0.09 1.23 16 6 N -0.90 -27.27 13.70 55.43 0.76 -26.51 16 7 Si 1.06 27.06 24.80 -169.99 -4.22 22.84 16 8 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 9 H -0.28 -6.76 5.80 56.52 0.33 -6.43 16 10 H -0.27 -6.77 6.88 56.52 0.39 -6.38 16 11 C -0.13 -2.51 6.29 -25.03 -0.16 -2.67 16 12 C -0.14 -2.31 6.57 -24.55 -0.16 -2.48 16 13 C 0.11 1.94 3.46 -26.83 -0.09 1.84 16 14 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 15 C -0.06 -0.94 5.07 -104.63 -0.53 -1.47 16 16 C -0.08 -1.36 9.24 -39.58 -0.37 -1.72 16 17 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 18 C -0.12 -1.48 9.83 -39.55 -0.39 -1.87 16 19 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 20 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 21 C -0.11 -1.52 9.47 -39.55 -0.37 -1.90 16 22 O -0.37 -8.22 6.20 -35.23 -0.22 -8.44 16 23 H 0.06 1.39 5.00 -51.93 -0.26 1.13 16 24 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 27 H 0.07 1.42 7.41 -51.93 -0.38 1.04 16 28 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 29 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.14 2.54 7.77 -52.49 -0.41 2.13 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 LS Contribution 291.20 15.07 4.39 4.39 Total: -1.00 -29.55 291.20 -8.10 -37.64 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.44 Total: -0.43 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -2.86 Total: -27.02 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.76 Total: -26.51 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.22 Total: -8.44 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.22 Total: 22.84 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.55 -8.10 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.105 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds