Wall clock time and date at job start Mon Mar 30 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.87171 * 2 1 4 4 H 1.07994 * 120.00010 * 114.39521 * 3 2 1 5 5 C 1.37881 * 119.99537 * 294.39691 * 3 2 1 6 6 N 1.31516 * 119.99373 * 161.62201 * 5 3 2 7 7 Si 1.86801 * 120.00365 * 341.61740 * 5 3 2 8 8 H 1.48495 * 109.46848 * 180.02562 * 7 5 3 9 9 H 1.48501 * 109.46455 * 60.00300 * 7 5 3 10 10 H 1.48499 * 109.47092 * 300.00878 * 7 5 3 11 11 C 1.54097 * 109.87630 * 121.00664 * 2 1 3 12 12 C 1.55133 * 104.03405 * 117.59155 * 11 2 1 13 13 C 1.54994 * 102.09229 * 338.99939 * 12 11 2 14 14 H 1.08997 * 110.75429 * 278.54535 * 13 12 11 15 15 C 1.50704 * 110.61812 * 155.60736 * 13 12 11 16 16 C 1.38267 * 119.99448 * 284.20335 * 15 13 12 17 17 C 1.38219 * 120.02252 * 179.76690 * 16 15 13 18 18 C 1.38238 * 120.01355 * 0.50829 * 17 16 15 19 19 C 1.38329 * 119.98826 * 359.74350 * 18 17 16 20 20 Cl 1.73602 * 120.01097 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99053 * 104.47880 * 15 13 12 22 22 O 1.43747 * 109.87921 * 238.99124 * 2 1 3 23 23 H 1.09001 * 109.46825 * 53.68210 * 1 2 3 24 24 H 1.08994 * 109.47068 * 173.67847 * 1 2 3 25 25 H 1.08999 * 109.46986 * 293.68337 * 1 2 3 26 26 H 0.96996 * 120.00272 * 354.90435 * 6 5 3 27 27 H 1.09004 * 110.48550 * 236.22224 * 11 2 1 28 28 H 1.08993 * 110.49056 * 358.86669 * 11 2 1 29 29 H 1.09009 * 110.83422 * 220.83765 * 12 11 2 30 30 H 1.08997 * 111.01508 * 97.24588 * 12 11 2 31 31 H 1.07994 * 119.98657 * 359.97438 * 16 15 13 32 32 H 1.08005 * 119.98903 * 180.25714 * 17 16 15 33 33 H 1.08001 * 120.00171 * 179.76799 * 18 17 16 34 34 H 1.07999 * 120.00913 * 359.95468 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 1 2.5891 1.7938 0.8518 5 6 1.8127 2.2332 -1.0875 6 7 1.9238 3.5380 -0.9656 7 14 1.3441 1.4855 -2.7339 8 1 1.1542 2.5676 -3.7329 9 1 0.0807 0.7188 -2.5876 10 1 2.4253 0.5754 -3.1900 11 6 2.0539 -0.7465 1.2421 12 6 2.8374 -1.9499 0.6551 13 6 2.2314 -2.0696 -0.7665 14 1 1.2862 -2.6117 -0.7391 15 6 3.2015 -2.7443 -1.7018 16 6 4.2903 -2.0459 -2.1902 17 6 5.1830 -2.6657 -3.0443 18 6 4.9819 -3.9810 -3.4190 19 6 3.8900 -4.6787 -2.9348 20 17 3.6374 -6.3308 -3.4043 21 6 2.9995 -4.0593 -2.0756 22 8 2.0188 -0.6964 -1.1586 23 1 -0.3633 0.6087 -0.8281 24 1 -0.3633 -1.0214 -0.1131 25 1 -0.3633 0.4128 0.9411 26 1 2.0943 3.9310 -0.0954 27 1 2.7175 -0.1044 1.8214 28 1 1.2237 -1.0928 1.8575 29 1 2.6507 -2.8540 1.2348 30 1 3.9048 -1.7350 0.6061 31 1 4.4450 -1.0168 -1.9016 32 1 6.0355 -2.1208 -3.4222 33 1 5.6776 -4.4639 -4.0893 34 1 2.1470 -4.6036 -1.6970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381095382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:02 Heat of formation + Delta-G solvation = -50.905961 kcal Electronic energy + Delta-G solvation = -18234.063398 eV Core-core repulsion = 15349.621157 eV Total energy + Delta-G solvation = -2884.442241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02832 -39.64744 -37.41610 -35.19335 -33.32522 -32.96612 -31.71683 -30.78898 -27.33152 -26.18566 -23.68878 -23.53434 -21.71588 -21.12007 -19.65379 -18.12887 -17.34096 -16.64188 -16.00740 -15.91987 -15.57781 -15.13372 -14.83008 -14.73520 -14.54537 -14.39151 -14.07289 -13.49870 -13.04033 -12.75313 -12.69812 -12.47352 -12.37608 -12.13831 -12.10201 -11.82851 -11.68302 -11.64617 -11.25836 -11.08593 -10.52108 -10.23054 -9.85047 -9.60102 -8.72487 -6.44868 0.18031 0.26776 1.11827 1.51886 1.57713 1.84555 2.51740 2.60761 2.97380 3.38686 3.72972 3.87964 3.96110 4.13413 4.14675 4.24837 4.31300 4.47348 4.54480 4.61404 4.75390 4.76832 4.83404 4.93792 4.96731 5.03447 5.15586 5.21318 5.26757 5.41269 5.57365 5.65060 5.82302 5.99124 6.05478 6.33429 6.71308 7.35757 8.61976 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.005983 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.425346 B = 4678.797224 C = 5058.215321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 C -0.594 4.594 4 H 0.030 0.970 5 C 0.002 3.998 6 N -0.935 5.935 7 Si 1.101 2.899 8 H -0.314 1.314 9 H -0.258 1.258 10 H -0.268 1.268 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.103 3.897 14 H 0.087 0.913 15 C -0.074 4.074 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.042 4.042 20 Cl -0.065 7.065 21 C -0.104 4.104 22 O -0.389 6.389 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.256 0.744 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 -19.634 -2.497 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.148 3.852 3 C -0.631 4.631 4 H 0.048 0.952 5 C -0.199 4.199 6 N -0.570 5.570 7 Si 0.928 3.072 8 H -0.243 1.243 9 H -0.183 1.183 10 H -0.194 1.194 11 C -0.167 4.167 12 C -0.165 4.165 13 C 0.046 3.954 14 H 0.104 0.896 15 C -0.075 4.075 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.069 4.069 20 Cl -0.037 7.037 21 C -0.123 4.123 22 O -0.310 6.310 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.049 -19.329 -4.272 20.029 hybrid contribution 0.420 0.385 2.075 2.152 sum 3.469 -18.944 -2.197 19.384 Atomic orbital electron populations 1.22388 0.96981 1.00469 1.01293 1.20114 0.91146 0.90542 0.83380 1.22144 1.39959 0.96543 1.04502 0.95218 1.26936 0.92640 0.94035 1.06253 1.70985 1.46757 1.12267 1.27024 0.83257 0.78863 0.73378 0.71717 1.24314 1.18304 1.19382 1.22898 0.99750 0.96252 0.97781 1.23079 0.99774 0.98695 0.94989 1.22039 0.96099 0.84929 0.92332 0.89557 1.19738 0.95841 0.93698 0.98198 1.21265 0.94340 0.99980 0.97043 1.21368 0.99718 0.94567 0.97102 1.21304 0.96897 0.94261 1.00362 1.20915 0.98228 0.86834 1.00874 1.98357 1.96548 1.17585 1.91163 1.20943 0.99914 0.93872 0.97575 1.88826 1.86431 1.19564 1.36213 0.94323 0.92159 0.92449 0.93490 0.93088 0.90036 0.87974 0.91819 0.87118 0.83078 0.82618 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 8.31 71.98 0.60 -5.79 16 2 C 0.19 8.43 0.70 -11.17 -0.01 8.42 16 3 C -0.59 -33.58 8.63 25.60 0.22 -33.36 16 4 H 0.03 1.83 7.60 -2.91 -0.02 1.80 16 5 C 0.00 0.10 5.29 84.66 0.45 0.55 16 6 N -0.93 -59.23 13.70 21.45 0.29 -58.93 16 7 Si 1.10 55.62 24.80 68.60 1.70 57.32 16 8 H -0.31 -16.14 7.11 99.48 0.71 -15.43 16 9 H -0.26 -11.97 5.80 99.48 0.58 -11.39 16 10 H -0.27 -13.14 6.88 99.48 0.68 -12.46 16 11 C -0.13 -4.80 6.29 31.70 0.20 -4.60 16 12 C -0.13 -3.96 6.57 32.01 0.21 -3.75 16 13 C 0.10 3.44 3.46 30.53 0.11 3.54 16 14 H 0.09 2.52 7.95 -2.39 -0.02 2.50 16 15 C -0.07 -2.27 5.07 -19.87 -0.10 -2.37 16 16 C -0.11 -3.44 9.24 22.27 0.21 -3.23 16 17 C -0.11 -2.73 10.05 22.27 0.22 -2.51 16 18 C -0.11 -2.40 9.83 22.29 0.22 -2.18 16 19 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16 20 Cl -0.07 -1.30 28.96 -2.72 -0.08 -1.38 16 21 C -0.10 -2.63 9.47 22.29 0.21 -2.42 16 22 O -0.39 -17.05 6.20 -148.98 -0.92 -17.97 16 23 H 0.04 1.74 5.00 -2.39 -0.01 1.73 16 24 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.26 16.22 8.73 -92.71 -0.81 15.41 16 27 H 0.05 2.06 7.41 -2.38 -0.02 2.05 16 28 H 0.08 2.59 7.69 -2.39 -0.02 2.57 16 29 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 31 H 0.11 4.13 7.77 -2.91 -0.02 4.11 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.15 3.11 8.05 -2.91 -0.02 3.08 16 Total: -1.00 -65.81 291.20 4.57 -61.25 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.90 Total: 8.25 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 2.67 Total: -48.53 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.29 Total: -58.93 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.92 Total: -17.97 kcal Atomic # 14 Polarization: 55.62 SS G_CDS: 1.70 Total: 57.32 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -65.81 4.57 -61.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds