Wall clock time and date at job start Mon Mar 30 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.82402 * 2 1 4 4 H 1.07999 * 120.00074 * 239.11217 * 3 2 1 5 5 C 1.37872 * 120.00084 * 59.11469 * 3 2 1 6 6 N 1.31523 * 120.00061 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 120.00352 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46987 * 89.99419 * 7 5 3 9 9 H 1.48493 * 109.47248 * 210.00077 * 7 5 3 10 10 H 1.48500 * 109.46769 * 330.00079 * 7 5 3 11 11 C 1.54381 * 109.83083 * 239.11231 * 2 1 3 12 12 C 1.55303 * 102.25289 * 219.13226 * 11 2 1 13 13 C 1.54941 * 100.94263 * 34.13291 * 12 11 2 14 14 H 1.09002 * 110.30812 * 82.47124 * 13 12 11 15 15 C 1.50706 * 110.31030 * 204.54119 * 13 12 11 16 16 C 1.38264 * 119.99001 * 83.33385 * 15 13 12 17 17 C 1.38224 * 120.02253 * 179.76825 * 16 15 13 18 18 C 1.38237 * 120.01473 * 0.51036 * 17 16 15 19 19 C 1.38334 * 119.98511 * 359.74453 * 18 17 16 20 20 Cl 1.73597 * 120.01639 * 180.02562 * 19 18 17 21 21 C 1.38190 * 119.99369 * 263.61012 * 15 13 12 22 22 O 1.43234 * 109.82972 * 120.98103 * 2 1 3 23 23 H 1.09001 * 109.47339 * 180.88639 * 1 2 3 24 24 H 1.09005 * 109.47112 * 300.89063 * 1 2 3 25 25 H 1.09008 * 109.47043 * 60.88566 * 1 2 3 26 26 H 0.96992 * 119.99901 * 180.02562 * 6 5 3 27 27 H 1.09005 * 110.84474 * 100.94162 * 11 2 1 28 28 H 1.09001 * 110.84667 * 337.32255 * 11 2 1 29 29 H 1.09004 * 111.12114 * 276.21132 * 12 11 2 30 30 H 1.09003 * 111.12327 * 152.05551 * 12 11 2 31 31 H 1.07998 * 119.99230 * 359.97438 * 16 15 13 32 32 H 1.07999 * 119.99313 * 180.24966 * 17 16 15 33 33 H 1.07998 * 120.00746 * 179.76901 * 18 17 16 34 34 H 1.08001 * 120.00505 * 359.96137 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6759 1.7629 -0.8026 5 6 1.6983 2.2741 1.0247 6 7 0.9248 1.8539 2.0019 7 14 2.3312 4.0317 1.0244 8 1 1.3683 4.9043 0.3058 9 1 2.4789 4.5048 2.4241 10 1 3.6495 4.0828 0.3428 11 6 2.0537 -0.7455 -1.2463 12 6 3.2730 -1.5216 -0.6779 13 6 2.7746 -1.8451 0.7531 14 1 2.1400 -2.7312 0.7414 15 6 3.9447 -2.0529 1.6799 16 6 4.5676 -0.9641 2.2615 17 6 5.6377 -1.1542 3.1154 18 6 6.0925 -2.4325 3.3802 19 6 5.4730 -3.5219 2.7945 20 17 6.0430 -5.1275 3.1270 21 6 4.3984 -3.3312 1.9439 22 8 2.0159 -0.6936 1.1552 23 1 -0.3634 -1.0275 0.0159 24 1 -0.3633 0.5276 0.8819 25 1 -0.3633 0.5001 -0.8979 26 1 0.6834 2.4565 2.7226 27 1 2.3672 -0.0408 -2.0166 28 1 1.3011 -1.4336 -1.6315 29 1 4.1620 -0.8915 -0.6514 30 1 3.4571 -2.4339 -1.2454 31 1 4.2158 0.0351 2.0511 32 1 6.1213 -0.3036 3.5726 33 1 6.9310 -2.5806 4.0445 34 1 3.9141 -4.1814 1.4865 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381095383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:07 Heat of formation + Delta-G solvation = -33.648258 kcal Electronic energy + Delta-G solvation = -18185.946550 eV Core-core repulsion = 15302.252659 eV Total energy + Delta-G solvation = -2883.693891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42140 -37.94539 -36.26449 -33.21948 -31.48912 -31.02879 -30.34769 -28.90141 -25.37030 -24.69697 -22.33631 -21.93021 -20.26911 -19.37526 -17.00105 -16.58165 -15.55557 -15.18730 -14.66516 -14.26688 -13.90067 -13.53827 -13.37131 -13.13257 -12.73210 -12.46343 -11.84021 -11.60111 -11.30802 -11.27216 -11.11450 -10.90593 -10.87953 -10.67822 -10.51638 -10.44214 -10.30791 -9.94097 -9.61571 -9.17123 -8.62608 -8.51161 -8.34466 -7.88420 -5.97366 -4.14249 1.50316 1.54143 2.27237 3.27023 3.35203 3.37228 3.93836 4.39216 4.82492 5.08915 5.14996 5.39512 5.44869 5.49519 5.67687 5.70099 5.72789 5.92190 6.09496 6.20845 6.27649 6.31208 6.49517 6.54437 6.73596 6.77405 6.79174 6.90656 7.00858 7.13650 7.18116 7.34827 7.75692 8.08091 8.34795 8.58574 9.01021 9.56907 11.03865 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.005794 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.017954 B = 4831.728768 C = 5492.642734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.227 3.773 3 C -0.530 4.530 4 H 0.058 0.942 5 C 0.082 3.918 6 N -0.859 5.859 7 Si 0.884 3.116 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.142 4.142 12 C -0.138 4.138 13 C 0.111 3.889 14 H 0.058 0.942 15 C -0.056 4.056 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.041 4.041 20 Cl -0.088 7.088 21 C -0.111 4.111 22 O -0.342 6.342 23 H 0.011 0.989 24 H 0.091 0.909 25 H 0.036 0.964 26 H 0.259 0.741 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -8.649 -0.053 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.190 3.810 3 C -0.568 4.568 4 H 0.076 0.924 5 C -0.124 4.124 6 N -0.495 5.495 7 Si 0.712 3.288 8 H -0.206 1.206 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.180 4.180 12 C -0.176 4.176 13 C 0.052 3.948 14 H 0.076 0.924 15 C -0.056 4.056 16 C -0.095 4.095 17 C -0.133 4.133 18 C -0.140 4.140 19 C -0.067 4.067 20 Cl -0.059 7.059 21 C -0.129 4.129 22 O -0.262 6.262 23 H 0.030 0.970 24 H 0.109 0.891 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.204 -8.670 0.358 11.278 hybrid contribution 0.449 0.720 -0.083 0.852 sum 7.653 -7.951 0.274 11.039 Atomic orbital electron populations 1.22008 0.97429 0.97698 1.02750 1.19677 0.90931 0.90508 0.79857 1.21210 1.32463 0.94526 1.08614 0.92369 1.24987 0.94243 0.97933 0.95192 1.69954 1.34147 1.35009 1.10397 0.86746 0.79454 0.85342 0.77302 1.20627 1.21151 1.19881 1.23229 0.95987 0.98456 1.00349 1.23145 0.99566 0.99600 0.95242 1.21543 0.89599 0.92450 0.91178 0.92441 1.20052 0.96449 0.91941 0.97205 1.21442 0.93206 1.00908 0.93932 1.21163 0.97278 0.96131 0.98700 1.20945 1.00624 0.91566 1.00883 1.20739 0.98698 0.85205 1.02049 1.98333 1.88791 1.24088 1.94692 1.20796 0.96237 0.97441 0.98473 1.88803 1.68536 1.36486 1.32370 0.96975 0.89074 0.94504 0.93040 0.91150 0.92934 0.90798 0.92049 0.83563 0.85426 0.85665 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.52 37.16 0.32 -3.04 16 2 C 0.23 5.44 0.82 -91.05 -0.07 5.37 16 3 C -0.53 -13.87 8.23 -34.44 -0.28 -14.15 16 4 H 0.06 1.51 7.48 -52.49 -0.39 1.11 16 5 C 0.08 2.17 5.26 -17.82 -0.09 2.08 16 6 N -0.86 -23.82 10.92 55.43 0.61 -23.22 16 7 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 11 C -0.14 -2.83 6.08 -24.79 -0.15 -2.99 16 12 C -0.14 -2.49 6.56 -24.49 -0.16 -2.65 16 13 C 0.11 2.17 3.65 -26.86 -0.10 2.08 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 C -0.06 -1.01 5.05 -104.63 -0.53 -1.54 16 16 C -0.08 -1.41 9.37 -39.58 -0.37 -1.78 16 17 C -0.11 -1.75 10.05 -39.59 -0.40 -2.15 16 18 C -0.12 -1.72 9.83 -39.55 -0.39 -2.11 16 19 C -0.04 -0.60 6.32 -39.50 -0.25 -0.85 16 20 Cl -0.09 -1.13 28.96 -51.86 -1.50 -2.63 16 21 C -0.11 -1.74 9.48 -39.55 -0.38 -2.11 16 22 O -0.34 -8.32 9.01 -35.23 -0.32 -8.64 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 25 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 28 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16 29 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.15 3.08 7.59 -52.49 -0.40 2.68 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -27.55 298.52 -9.01 -36.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.41 Total: 1.82 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.85 Total: -23.83 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.61 Total: -23.22 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.32 Total: -8.64 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.55 -9.01 -36.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.906 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds