Wall clock time and date at job start Mon Mar 30 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.86783 * 2 1 4 4 H 1.08004 * 120.00225 * 120.44752 * 3 2 1 5 5 C 1.37882 * 120.00051 * 300.44702 * 3 2 1 6 6 N 1.31515 * 119.99805 * 180.02562 * 5 3 2 7 7 Si 1.86797 * 120.00096 * 0.02562 * 5 3 2 8 8 H 1.48496 * 109.47267 * 89.99734 * 7 5 3 9 9 H 1.48493 * 109.47344 * 210.00293 * 7 5 3 10 10 H 1.48510 * 109.46864 * 329.99843 * 7 5 3 11 11 C 1.54096 * 109.87904 * 121.16150 * 2 1 3 12 12 C 1.54805 * 104.18742 * 121.45719 * 11 2 1 13 13 C 1.54993 * 102.09382 * 20.88093 * 12 11 2 14 14 H 1.08997 * 110.75612 * 81.54528 * 13 12 11 15 15 C 1.50706 * 110.61828 * 204.47981 * 13 12 11 16 16 C 1.38268 * 119.98950 * 260.51937 * 15 13 12 17 17 C 1.38213 * 120.02308 * 179.97438 * 16 15 13 18 18 C 1.38234 * 120.01611 * 0.02854 * 17 16 15 19 19 C 1.38327 * 119.98505 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.01168 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99631 * 80.24628 * 15 13 12 22 22 O 1.43739 * 109.87943 * 238.99642 * 2 1 3 23 23 H 1.08998 * 109.47446 * 179.55340 * 1 2 3 24 24 H 1.08998 * 109.47575 * 299.55004 * 1 2 3 25 25 H 1.08998 * 109.47330 * 59.55235 * 1 2 3 26 26 H 0.97001 * 119.99727 * 180.02562 * 6 5 3 27 27 H 1.09009 * 110.48536 * 240.13257 * 11 2 1 28 28 H 1.08994 * 110.48897 * 2.77485 * 11 2 1 29 29 H 1.09004 * 110.90928 * 262.67967 * 12 11 2 30 30 H 1.09000 * 110.91169 * 139.07779 * 12 11 2 31 31 H 1.08001 * 119.98483 * 359.97438 * 16 15 13 32 32 H 1.08009 * 119.99296 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00722 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.00424 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 1 2.6714 1.7641 0.8063 5 6 1.7074 2.2713 -1.0294 6 7 2.1548 3.5081 -1.0296 7 14 0.6184 1.6718 -2.4237 8 1 -0.8050 1.9235 -2.0834 9 1 0.9654 2.3994 -3.6708 10 1 0.8291 0.2156 -2.6253 11 6 2.0540 -0.7499 1.2400 12 6 2.9195 -1.8922 0.6550 13 6 3.2379 -1.3630 -0.7665 14 1 4.0691 -0.6583 -0.7392 15 6 3.5428 -2.5046 -1.7019 16 6 4.8553 -2.8267 -1.9945 17 6 5.1357 -3.8739 -2.8518 18 6 4.1041 -4.5995 -3.4177 19 6 2.7910 -4.2777 -3.1254 20 17 1.4949 -5.1889 -3.8352 21 6 2.5108 -3.2329 -2.2626 22 8 2.0187 -0.6963 -1.1586 23 1 -0.3634 -1.0276 -0.0080 24 1 -0.3634 0.5068 0.8940 25 1 -0.3634 0.5208 -0.8859 26 1 1.9189 4.1090 -1.7537 27 1 2.6619 -0.0883 1.8573 28 1 1.2247 -1.1572 1.8182 29 1 2.3540 -2.8228 0.6060 30 1 3.8332 -2.0240 1.2346 31 1 5.6615 -2.2598 -1.5529 32 1 6.1611 -4.1254 -3.0797 33 1 4.3234 -5.4181 -4.0873 34 1 1.4858 -2.9837 -2.0308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381095384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:13 Heat of formation + Delta-G solvation = -24.397649 kcal Electronic energy + Delta-G solvation = -18263.219720 eV Core-core repulsion = 15379.926965 eV Total energy + Delta-G solvation = -2883.292755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64485 -38.23534 -36.36764 -33.21113 -31.72370 -31.31789 -30.60774 -29.59366 -25.34014 -24.97719 -22.58603 -22.19657 -20.48423 -19.42145 -16.99739 -16.64175 -16.01550 -15.46491 -15.02254 -14.40178 -14.15787 -13.59731 -13.54553 -13.24616 -12.99109 -12.45349 -12.21561 -12.10955 -11.75802 -11.50496 -11.32834 -11.26719 -11.09279 -10.94633 -10.45080 -10.40673 -10.10915 -9.88302 -9.70330 -8.99524 -8.75370 -8.58543 -8.56536 -8.18758 -6.10550 -4.19006 1.24799 1.38749 2.19765 3.36841 3.48033 3.68564 3.72660 4.52115 4.62789 4.87928 5.02699 5.20985 5.27472 5.33562 5.44821 5.54089 5.63433 5.76948 5.86290 6.02269 6.11110 6.19611 6.29076 6.32915 6.38547 6.43569 6.53095 6.58818 6.68943 6.80303 6.85803 6.90417 7.28104 7.68770 8.04445 8.48875 8.89004 9.55277 11.00271 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.006603 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.990452 B = 4239.632111 C = 4543.335402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.188 3.812 3 C -0.534 4.534 4 H 0.075 0.925 5 C 0.085 3.915 6 N -0.894 5.894 7 Si 0.880 3.120 8 H -0.288 1.288 9 H -0.303 1.303 10 H -0.224 1.224 11 C -0.130 4.130 12 C -0.141 4.141 13 C 0.115 3.885 14 H 0.080 0.920 15 C -0.053 4.053 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.037 4.037 20 Cl -0.081 7.081 21 C -0.086 4.086 22 O -0.367 6.367 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -15.974 -1.751 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.151 3.849 3 C -0.571 4.571 4 H 0.093 0.907 5 C -0.119 4.119 6 N -0.531 5.531 7 Si 0.710 3.290 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.148 1.148 11 C -0.168 4.168 12 C -0.179 4.179 13 C 0.057 3.943 14 H 0.098 0.902 15 C -0.053 4.053 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.064 4.064 20 Cl -0.052 7.052 21 C -0.105 4.105 22 O -0.288 6.288 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.944 -15.897 -2.095 16.302 hybrid contribution -0.592 -0.069 -0.693 0.914 sum 2.351 -15.966 -2.787 16.377 Atomic orbital electron populations 1.22118 0.96706 0.99198 1.01472 1.20088 0.90982 0.92078 0.81798 1.21271 1.33165 0.93003 1.09621 0.90691 1.24999 0.94970 0.94227 0.97692 1.69932 1.44618 1.05595 1.32932 0.87018 0.79275 0.81846 0.80859 1.21639 1.23146 1.14806 1.22892 0.98749 0.96103 0.99053 1.23072 1.00010 0.98767 0.96039 1.21702 0.91965 0.90158 0.90447 0.90219 1.19972 0.92584 0.95839 0.96950 1.21122 0.96216 0.97503 0.97953 1.21005 0.98764 0.95784 0.97394 1.20959 0.90709 1.00999 1.01323 1.20931 0.88945 0.96590 0.99907 1.98349 1.50059 1.73748 1.83059 1.20993 1.01090 0.92990 0.95407 1.89133 1.36912 1.66915 1.35828 0.94540 0.91849 0.93551 0.92635 0.90853 0.92302 0.91672 0.91365 0.85276 0.85278 0.85429 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.16 37.16 0.30 -2.66 16 2 C 0.19 4.28 0.70 -91.20 -0.06 4.22 16 3 C -0.53 -14.59 8.80 -34.44 -0.30 -14.89 16 4 H 0.08 2.20 7.59 -52.48 -0.40 1.80 16 5 C 0.09 2.45 5.45 -17.82 -0.10 2.35 16 6 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 7 Si 0.88 22.55 23.92 -169.99 -4.07 18.49 16 8 H -0.29 -7.23 6.87 56.52 0.39 -6.84 16 9 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 10 H -0.22 -5.62 5.36 56.52 0.30 -5.32 16 11 C -0.13 -2.46 6.27 -25.21 -0.16 -2.62 16 12 C -0.14 -2.33 6.57 -24.73 -0.16 -2.49 16 13 C 0.12 2.17 3.49 -26.83 -0.09 2.07 16 14 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 15 C -0.05 -0.87 5.06 -104.62 -0.53 -1.40 16 16 C -0.11 -1.50 9.70 -39.58 -0.38 -1.88 16 17 C -0.11 -1.31 10.04 -39.59 -0.40 -1.71 16 18 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 19 C -0.04 -0.54 6.32 -39.50 -0.25 -0.79 16 20 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.58 16 21 C -0.09 -1.41 9.16 -39.55 -0.36 -1.77 16 22 O -0.37 -8.32 6.75 -35.23 -0.24 -8.55 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 1.07 3.25 -51.93 -0.17 0.90 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.07 1.42 7.41 -51.92 -0.38 1.03 16 28 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 29 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 2.39 7.64 -52.48 -0.40 1.99 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -30.25 289.10 -7.94 -38.19 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.37 Total: 0.01 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.89 Total: -23.45 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.24 Total: -8.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.07 Total: 18.49 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.25 -7.94 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.792 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds