Wall clock time and date at job start Mon Mar 30 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.86783 * 2 1 4 4 H 1.08004 * 120.00225 * 120.44752 * 3 2 1 5 5 C 1.37882 * 120.00051 * 300.44702 * 3 2 1 6 6 N 1.31515 * 119.99805 * 180.02562 * 5 3 2 7 7 Si 1.86797 * 120.00096 * 0.02562 * 5 3 2 8 8 H 1.48496 * 109.47267 * 89.99734 * 7 5 3 9 9 H 1.48493 * 109.47344 * 210.00293 * 7 5 3 10 10 H 1.48510 * 109.46864 * 329.99843 * 7 5 3 11 11 C 1.54096 * 109.87904 * 121.16150 * 2 1 3 12 12 C 1.54805 * 104.18742 * 121.45719 * 11 2 1 13 13 C 1.54993 * 102.09382 * 20.88093 * 12 11 2 14 14 H 1.08997 * 110.75612 * 81.54528 * 13 12 11 15 15 C 1.50706 * 110.61828 * 204.47981 * 13 12 11 16 16 C 1.38268 * 119.98950 * 260.51937 * 15 13 12 17 17 C 1.38213 * 120.02308 * 179.97438 * 16 15 13 18 18 C 1.38234 * 120.01611 * 0.02854 * 17 16 15 19 19 C 1.38327 * 119.98505 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.01168 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99631 * 80.24628 * 15 13 12 22 22 O 1.43739 * 109.87943 * 238.99642 * 2 1 3 23 23 H 1.08998 * 109.47446 * 179.55340 * 1 2 3 24 24 H 1.08998 * 109.47575 * 299.55004 * 1 2 3 25 25 H 1.08998 * 109.47330 * 59.55235 * 1 2 3 26 26 H 0.97001 * 119.99727 * 180.02562 * 6 5 3 27 27 H 1.09009 * 110.48536 * 240.13257 * 11 2 1 28 28 H 1.08994 * 110.48897 * 2.77485 * 11 2 1 29 29 H 1.09004 * 110.90928 * 262.67967 * 12 11 2 30 30 H 1.09000 * 110.91169 * 139.07779 * 12 11 2 31 31 H 1.08001 * 119.98483 * 359.97438 * 16 15 13 32 32 H 1.08009 * 119.99296 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00722 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.00424 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 1 2.6714 1.7641 0.8063 5 6 1.7074 2.2713 -1.0294 6 7 2.1548 3.5081 -1.0296 7 14 0.6184 1.6718 -2.4237 8 1 -0.8050 1.9235 -2.0834 9 1 0.9654 2.3994 -3.6708 10 1 0.8291 0.2156 -2.6253 11 6 2.0540 -0.7499 1.2400 12 6 2.9195 -1.8922 0.6550 13 6 3.2379 -1.3630 -0.7665 14 1 4.0691 -0.6583 -0.7392 15 6 3.5428 -2.5046 -1.7019 16 6 4.8553 -2.8267 -1.9945 17 6 5.1357 -3.8739 -2.8518 18 6 4.1041 -4.5995 -3.4177 19 6 2.7910 -4.2777 -3.1254 20 17 1.4949 -5.1889 -3.8352 21 6 2.5108 -3.2329 -2.2626 22 8 2.0187 -0.6963 -1.1586 23 1 -0.3634 -1.0276 -0.0080 24 1 -0.3634 0.5068 0.8940 25 1 -0.3634 0.5208 -0.8859 26 1 1.9189 4.1090 -1.7537 27 1 2.6619 -0.0883 1.8573 28 1 1.2247 -1.1572 1.8182 29 1 2.3540 -2.8228 0.6060 30 1 3.8332 -2.0240 1.2346 31 1 5.6615 -2.2598 -1.5529 32 1 6.1611 -4.1254 -3.0797 33 1 4.3234 -5.4181 -4.0873 34 1 1.4858 -2.9837 -2.0308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381095384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:10 Heat of formation + Delta-G solvation = -41.767484 kcal Electronic energy + Delta-G solvation = -18263.972933 eV Core-core repulsion = 15379.926965 eV Total energy + Delta-G solvation = -2884.045967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96888 -39.60208 -37.41747 -35.05522 -33.39608 -32.92294 -31.66761 -31.01303 -27.21743 -26.57340 -23.76336 -23.44022 -21.80224 -21.17966 -18.70529 -18.08720 -17.55365 -16.75847 -16.53789 -15.78006 -15.53849 -15.16379 -14.80304 -14.57535 -14.52990 -14.20428 -14.04630 -13.50211 -13.16150 -12.89490 -12.84342 -12.52763 -12.43817 -12.23508 -12.11106 -12.00707 -11.68542 -11.53838 -11.32448 -10.88766 -10.74174 -10.15272 -9.78617 -9.58358 -8.33690 -6.43062 0.18718 0.32540 1.15284 1.30418 1.39258 1.64633 2.38976 2.63079 2.99228 3.35082 3.73160 3.90897 4.00640 4.12587 4.24335 4.28816 4.40943 4.43528 4.60617 4.64637 4.73336 4.77792 4.86087 4.98583 5.02863 5.04648 5.16708 5.27088 5.31949 5.39209 5.52424 5.66662 5.68439 5.86298 6.10878 6.54263 6.69577 7.34550 8.80929 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.006603 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.990452 B = 4239.632111 C = 4543.335402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.180 3.820 3 C -0.528 4.528 4 H 0.040 0.960 5 C 0.033 3.967 6 N -0.942 5.942 7 Si 0.935 3.065 8 H -0.279 1.279 9 H -0.314 1.314 10 H -0.216 1.216 11 C -0.129 4.129 12 C -0.127 4.127 13 C 0.108 3.892 14 H 0.059 0.941 15 C -0.073 4.073 16 C -0.113 4.113 17 C -0.099 4.099 18 C -0.114 4.114 19 C -0.047 4.047 20 Cl -0.076 7.076 21 C -0.104 4.104 22 O -0.386 6.386 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.264 0.736 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -19.051 -2.287 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.142 3.858 3 C -0.565 4.565 4 H 0.058 0.942 5 C -0.166 4.166 6 N -0.582 5.582 7 Si 0.764 3.236 8 H -0.207 1.207 9 H -0.243 1.243 10 H -0.139 1.139 11 C -0.166 4.166 12 C -0.165 4.165 13 C 0.051 3.949 14 H 0.077 0.923 15 C -0.074 4.074 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.073 4.073 20 Cl -0.047 7.047 21 C -0.123 4.123 22 O -0.307 6.307 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.429 -18.999 -2.617 19.483 hybrid contribution -0.640 0.836 -0.494 1.163 sum 2.789 -18.163 -3.111 18.637 Atomic orbital electron populations 1.22096 0.95553 1.00976 1.00954 1.20076 0.91936 0.89952 0.83805 1.21635 1.31437 0.95647 1.07809 0.94186 1.25723 0.96502 0.94293 1.00114 1.70059 1.47059 1.06984 1.34090 0.86146 0.78139 0.81526 0.77749 1.20651 1.24312 1.13888 1.22830 0.99823 0.96460 0.97520 1.23023 1.00747 0.98174 0.94526 1.21811 0.89806 0.90580 0.92732 0.92269 1.19817 0.93973 0.95687 0.97911 1.21366 0.95400 0.98198 0.98184 1.21424 1.00528 0.94178 0.95559 1.21356 0.89799 1.01273 1.00844 1.21045 0.90069 0.96379 0.99813 1.98349 1.50086 1.73413 1.82848 1.20874 1.00223 0.94333 0.96889 1.89049 1.38501 1.67134 1.35976 0.91515 0.91149 0.95272 0.92764 0.92095 0.89860 0.90077 0.89041 0.83855 0.81467 0.82641 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 8.16 71.98 0.59 -5.18 16 2 C 0.18 8.13 0.70 -11.17 -0.01 8.13 16 3 C -0.53 -29.62 8.80 25.60 0.23 -29.40 16 4 H 0.04 2.46 7.59 -2.91 -0.02 2.44 16 5 C 0.03 1.92 5.45 84.66 0.46 2.38 16 6 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 7 Si 0.94 47.60 23.92 68.60 1.64 49.24 16 8 H -0.28 -13.61 6.87 99.48 0.68 -12.93 16 9 H -0.31 -16.32 7.11 99.48 0.71 -15.62 16 10 H -0.22 -10.58 5.36 99.48 0.53 -10.05 16 11 C -0.13 -4.69 6.27 31.58 0.20 -4.49 16 12 C -0.13 -3.94 6.57 31.89 0.21 -3.73 16 13 C 0.11 3.99 3.49 30.53 0.11 4.10 16 14 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 15 C -0.07 -2.30 5.06 -19.87 -0.10 -2.40 16 16 C -0.11 -2.80 9.70 22.27 0.22 -2.58 16 17 C -0.10 -1.92 10.04 22.26 0.22 -1.70 16 18 C -0.11 -2.39 9.83 22.29 0.22 -2.17 16 19 C -0.05 -1.23 6.32 22.32 0.14 -1.09 16 20 Cl -0.08 -1.86 28.96 -2.72 -0.08 -1.93 16 21 C -0.10 -3.25 9.16 22.29 0.20 -3.05 16 22 O -0.39 -17.29 6.75 -148.98 -1.01 -18.29 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.03 1.30 3.25 -2.39 -0.01 1.29 16 26 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.06 2.34 7.41 -2.38 -0.02 2.33 16 28 H 0.08 2.61 7.70 -2.39 -0.02 2.59 16 29 H 0.08 2.28 8.05 -2.38 -0.02 2.26 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.12 4.09 7.64 -2.91 -0.02 4.06 16 Total: -1.00 -67.33 289.10 4.44 -62.89 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.90 Total: 8.53 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 2.68 Total: -41.17 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.30 Total: -59.26 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.01 Total: -18.29 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.64 Total: 49.24 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.93 kcal Total: -67.33 4.44 -62.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381095384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds