Wall clock time and date at job start Mon Mar 30 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.82514 * 2 1 4 4 C 1.38242 * 119.98309 * 90.28924 * 3 2 1 5 5 C 1.38216 * 120.00867 * 179.72966 * 4 3 2 6 6 C 1.38361 * 119.98722 * 0.54037 * 5 4 3 7 7 Cl 1.73600 * 120.01375 * 179.74963 * 6 5 4 8 8 C 1.38350 * 119.97083 * 359.73601 * 6 5 4 9 9 C 1.38215 * 119.98669 * 359.97438 * 8 6 5 10 10 C 1.54383 * 109.83025 * 120.97691 * 2 1 3 11 11 C 1.55304 * 102.25238 * 98.15329 * 10 2 1 12 12 C 1.54952 * 100.94067 * 34.14076 * 11 10 2 13 13 H 1.08996 * 110.39501 * 82.50611 * 12 11 10 14 14 C 1.50701 * 110.30909 * 204.64052 * 12 11 10 15 15 H 1.08002 * 119.99761 * 357.15644 * 14 12 11 16 16 C 1.37871 * 119.99694 * 177.44207 * 14 12 11 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 12 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 12 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 O 1.43236 * 109.83692 * 239.11190 * 2 1 3 23 23 H 1.08998 * 109.47031 * 179.43168 * 1 2 3 24 24 H 1.08992 * 109.47480 * 299.44042 * 1 2 3 25 25 H 1.09007 * 109.46809 * 59.43278 * 1 2 3 26 26 H 1.07998 * 119.99724 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.01084 * 180.27429 * 5 4 3 28 28 H 1.07996 * 120.00429 * 179.97438 * 8 6 5 29 29 H 1.08001 * 119.98910 * 180.02562 * 9 8 6 30 30 H 1.08999 * 110.85080 * 216.35351 * 10 2 1 31 31 H 1.08999 * 110.84510 * 339.76644 * 10 2 1 32 32 H 1.08996 * 111.13082 * 276.22173 * 11 10 2 33 33 H 1.09001 * 111.12042 * 152.05262 * 11 10 2 34 34 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 6 2.2811 2.0656 1.1974 5 6 2.7551 3.3639 1.1980 6 6 2.9789 4.0190 0.0000 7 17 3.5681 5.6519 0.0000 8 6 2.7330 3.3719 -1.1979 9 6 2.2647 2.0716 -1.1973 10 6 2.0537 -0.7475 1.2452 11 6 2.3680 -2.1575 0.6751 12 6 2.8408 -1.7976 -0.7559 13 1 3.8901 -1.5028 -0.7464 14 6 2.6350 -2.9666 -1.6843 15 1 2.2526 -3.9007 -1.2999 16 6 2.9404 -2.8455 -3.0233 17 7 2.7660 -3.8675 -3.8326 18 14 3.6018 -1.2300 -3.6882 19 1 5.0845 -1.2304 -3.6049 20 1 3.1856 -1.0701 -5.1047 21 1 3.0612 -0.1052 -2.8834 22 8 2.0160 -0.6917 -1.1563 23 1 -0.3633 -1.0276 -0.0102 24 1 -0.3634 0.5051 0.8949 25 1 -0.3633 0.5227 -0.8849 26 1 2.1027 1.5556 2.1325 27 1 2.9468 3.8685 2.1334 28 1 2.9071 3.8829 -2.1333 29 1 2.0731 1.5663 -2.1324 30 1 2.9570 -0.2744 1.6302 31 1 1.2862 -0.8001 2.0173 32 1 1.4729 -2.7790 0.6484 33 1 3.1635 -2.6418 1.2415 34 1 2.9805 -3.7823 -4.7747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381105661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:47 Heat of formation + Delta-G solvation = -31.691641 kcal Electronic energy + Delta-G solvation = -18254.867923 eV Core-core repulsion = 15371.258877 eV Total energy + Delta-G solvation = -2883.609046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94555 -38.10447 -36.38504 -33.17199 -32.01943 -31.35783 -30.65460 -29.07167 -26.93398 -23.83327 -22.88873 -22.14096 -20.20967 -19.58131 -17.28603 -16.83270 -15.69829 -15.53887 -14.94082 -14.76141 -14.02359 -13.64871 -13.47159 -13.24925 -12.82550 -12.61111 -12.47946 -12.13391 -11.98550 -11.76080 -11.51549 -11.21876 -11.08350 -10.81192 -10.68995 -10.29785 -10.18449 -9.91870 -9.72969 -9.40424 -8.92762 -8.56956 -8.45785 -8.30862 -6.12152 -4.20572 1.23994 1.40219 2.13700 3.37294 3.42741 3.63827 3.73968 4.49703 4.53840 4.91152 4.93584 4.96369 5.26066 5.31199 5.38265 5.49086 5.55982 5.74070 5.78263 5.91908 5.99194 6.05459 6.15149 6.19742 6.31058 6.34603 6.40932 6.51483 6.54065 6.71518 6.77912 6.93708 7.19479 7.59852 8.25659 8.41728 8.89279 9.52017 10.98336 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.006396 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.158290 B = 4376.592729 C = 5172.180591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.132 3.868 3 C -0.069 4.069 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.042 4.042 7 Cl -0.085 7.085 8 C -0.115 4.115 9 C -0.083 4.083 10 C -0.147 4.147 11 C -0.134 4.134 12 C 0.173 3.827 13 H 0.027 0.973 14 C -0.523 4.523 15 H 0.078 0.922 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.866 3.134 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.219 1.219 22 O -0.362 6.362 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 14.518 10.055 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.092 3.908 3 C -0.070 4.070 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.068 4.068 7 Cl -0.056 7.056 8 C -0.134 4.134 9 C -0.101 4.101 10 C -0.185 4.185 11 C -0.171 4.171 12 C 0.118 3.882 13 H 0.044 0.956 14 C -0.559 4.559 15 H 0.096 0.904 16 C -0.120 4.120 17 N -0.530 5.530 18 Si 0.693 3.307 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.142 1.142 22 O -0.283 6.283 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.400 14.653 9.672 17.613 hybrid contribution 0.528 0.815 -0.349 1.032 sum -0.872 15.468 9.322 18.081 Atomic orbital electron populations 1.21996 0.93946 1.02674 1.01215 1.20741 0.93706 0.87705 0.88651 1.20523 0.96880 0.96686 0.92902 1.21005 0.99419 0.93841 0.98185 1.20936 1.00952 0.95054 0.96541 1.20887 1.04172 0.86389 0.95393 1.98344 1.87267 1.21010 1.98994 1.21082 1.00419 0.95203 0.96684 1.21246 0.96626 0.92761 0.99512 1.23241 1.00834 0.97404 0.97012 1.23125 1.01513 0.94950 0.97552 1.20963 0.90214 0.85174 0.91839 0.95584 1.21024 1.45512 0.96375 0.93023 0.90423 1.25042 0.93672 0.96487 0.96817 1.69926 1.47300 1.30964 1.04811 0.87059 0.78699 0.86623 0.78280 1.21232 1.21858 1.14178 1.88907 1.67952 1.44541 1.26866 0.91387 0.92732 0.92357 0.85097 0.85342 0.85282 0.84080 0.91224 0.91041 0.90878 0.91504 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.71 37.16 0.32 -1.86 16 2 C 0.13 2.29 1.08 -91.05 -0.10 2.19 16 3 C -0.07 -1.11 4.81 -104.62 -0.50 -1.61 16 4 C -0.11 -1.41 8.75 -39.59 -0.35 -1.76 16 5 C -0.12 -1.46 9.83 -39.54 -0.39 -1.84 16 6 C -0.04 -0.56 6.32 -39.49 -0.25 -0.81 16 7 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 8 C -0.12 -1.65 9.83 -39.55 -0.39 -2.04 16 9 C -0.08 -1.36 9.36 -39.59 -0.37 -1.73 16 10 C -0.15 -2.28 5.04 -24.78 -0.12 -2.41 16 11 C -0.13 -2.51 6.53 -24.48 -0.16 -2.67 16 12 C 0.17 4.00 2.69 -26.85 -0.07 3.93 16 13 H 0.03 0.63 7.63 -51.93 -0.40 0.23 16 14 C -0.52 -14.52 9.39 -34.44 -0.32 -14.85 16 15 H 0.08 2.31 8.01 -52.49 -0.42 1.89 16 16 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 17 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 18 Si 0.87 21.49 27.07 -169.99 -4.60 16.89 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.22 -5.09 4.20 56.52 0.24 -4.85 16 22 O -0.36 -7.98 6.45 -35.23 -0.23 -8.21 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.13 1.46 6.86 -52.49 -0.36 1.10 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.14 2.51 6.37 -52.49 -0.33 2.18 16 30 H 0.07 1.01 6.90 -51.93 -0.36 0.65 16 31 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 32 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -29.87 291.28 -8.50 -38.37 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.53 Total: 0.63 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.80 Total: -23.13 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.23 Total: -8.21 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.60 Total: 16.89 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.87 -8.50 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381105661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.678 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds