Wall clock time and date at job start Mon Mar 30 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.82514 * 2 1 4 4 C 1.38242 * 119.98309 * 90.28924 * 3 2 1 5 5 C 1.38216 * 120.00867 * 179.72966 * 4 3 2 6 6 C 1.38361 * 119.98722 * 0.54037 * 5 4 3 7 7 Cl 1.73600 * 120.01375 * 179.74963 * 6 5 4 8 8 C 1.38350 * 119.97083 * 359.73601 * 6 5 4 9 9 C 1.38215 * 119.98669 * 359.97438 * 8 6 5 10 10 C 1.54383 * 109.83025 * 120.97691 * 2 1 3 11 11 C 1.55304 * 102.25238 * 98.15329 * 10 2 1 12 12 C 1.54952 * 100.94067 * 34.14076 * 11 10 2 13 13 H 1.08996 * 110.39501 * 82.50611 * 12 11 10 14 14 C 1.50701 * 110.30909 * 204.64052 * 12 11 10 15 15 H 1.08002 * 119.99761 * 357.15644 * 14 12 11 16 16 C 1.37871 * 119.99694 * 177.44207 * 14 12 11 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 12 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 12 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 O 1.43236 * 109.83692 * 239.11190 * 2 1 3 23 23 H 1.08998 * 109.47031 * 179.43168 * 1 2 3 24 24 H 1.08992 * 109.47480 * 299.44042 * 1 2 3 25 25 H 1.09007 * 109.46809 * 59.43278 * 1 2 3 26 26 H 1.07998 * 119.99724 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.01084 * 180.27429 * 5 4 3 28 28 H 1.07996 * 120.00429 * 179.97438 * 8 6 5 29 29 H 1.08001 * 119.98910 * 180.02562 * 9 8 6 30 30 H 1.08999 * 110.85080 * 216.35351 * 10 2 1 31 31 H 1.08999 * 110.84510 * 339.76644 * 10 2 1 32 32 H 1.08996 * 111.13082 * 276.22173 * 11 10 2 33 33 H 1.09001 * 111.12042 * 152.05262 * 11 10 2 34 34 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 6 2.2811 2.0656 1.1974 5 6 2.7551 3.3639 1.1980 6 6 2.9789 4.0190 0.0000 7 17 3.5681 5.6519 0.0000 8 6 2.7330 3.3719 -1.1979 9 6 2.2647 2.0716 -1.1973 10 6 2.0537 -0.7475 1.2452 11 6 2.3680 -2.1575 0.6751 12 6 2.8408 -1.7976 -0.7559 13 1 3.8901 -1.5028 -0.7464 14 6 2.6350 -2.9666 -1.6843 15 1 2.2526 -3.9007 -1.2999 16 6 2.9404 -2.8455 -3.0233 17 7 2.7660 -3.8675 -3.8326 18 14 3.6018 -1.2300 -3.6882 19 1 5.0845 -1.2304 -3.6049 20 1 3.1856 -1.0701 -5.1047 21 1 3.0612 -0.1052 -2.8834 22 8 2.0160 -0.6917 -1.1563 23 1 -0.3633 -1.0276 -0.0102 24 1 -0.3634 0.5051 0.8949 25 1 -0.3633 0.5227 -0.8849 26 1 2.1027 1.5556 2.1325 27 1 2.9468 3.8685 2.1334 28 1 2.9071 3.8829 -2.1333 29 1 2.0731 1.5663 -2.1324 30 1 2.9570 -0.2744 1.6302 31 1 1.2862 -0.8001 2.0173 32 1 1.4729 -2.7790 0.6484 33 1 3.1635 -2.6418 1.2415 34 1 2.9805 -3.7823 -4.7747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381105661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:46 Heat of formation + Delta-G solvation = -48.169375 kcal Electronic energy + Delta-G solvation = -18255.582451 eV Core-core repulsion = 15371.258877 eV Total energy + Delta-G solvation = -2884.323574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21672 -39.39229 -37.39197 -35.01080 -33.66661 -32.78684 -31.83027 -30.31852 -28.65274 -25.33549 -23.98167 -23.48189 -21.84859 -20.87487 -18.94656 -18.40689 -17.07951 -16.87007 -16.52551 -16.01165 -15.42086 -15.04187 -14.67041 -14.59396 -14.43590 -14.23145 -13.78426 -13.51515 -13.32810 -12.97821 -12.85238 -12.69552 -12.40351 -12.28071 -12.03095 -11.76371 -11.64010 -11.49168 -11.40668 -11.21846 -10.72624 -10.05376 -9.97125 -9.52043 -8.34423 -6.46051 0.16600 0.35385 1.14595 1.36348 1.38170 1.66893 2.41932 2.65960 2.89440 3.37892 3.67443 3.89284 3.96422 3.98524 4.10924 4.36515 4.44554 4.47322 4.58452 4.64661 4.74170 4.78937 4.96042 5.01043 5.02207 5.05432 5.16669 5.26183 5.29018 5.46154 5.50287 5.56298 5.66423 5.85374 6.21717 6.52665 6.78525 7.31140 8.79669 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.006396 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.158290 B = 4376.592729 C = 5172.180591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.120 3.880 3 C -0.085 4.085 4 C -0.098 4.098 5 C -0.108 4.108 6 C -0.046 4.046 7 Cl -0.072 7.072 8 C -0.120 4.120 9 C -0.107 4.107 10 C -0.132 4.132 11 C -0.132 4.132 12 C 0.172 3.828 13 H 0.022 0.978 14 C -0.528 4.528 15 H 0.041 0.959 16 C 0.027 3.973 17 N -0.942 5.942 18 Si 0.926 3.074 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.198 1.198 22 O -0.386 6.386 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 17.414 12.762 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 C -0.085 4.085 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.073 4.073 7 Cl -0.043 7.043 8 C -0.138 4.138 9 C -0.125 4.125 10 C -0.169 4.169 11 C -0.170 4.170 12 C 0.116 3.884 13 H 0.039 0.961 14 C -0.565 4.565 15 H 0.059 0.941 16 C -0.172 4.172 17 N -0.582 5.582 18 Si 0.751 3.249 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.120 1.120 22 O -0.307 6.307 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.178 0.822 27 H 0.176 0.824 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.173 17.563 12.402 21.533 hybrid contribution 0.415 -0.055 -1.125 1.200 sum -0.758 17.508 11.277 20.839 Atomic orbital electron populations 1.21990 0.92930 1.02143 1.02488 1.21063 0.94617 0.88461 0.87784 1.20433 0.98272 0.95936 0.93870 1.21243 0.98239 0.94039 0.98089 1.21287 0.99324 0.94727 0.97324 1.21035 1.03724 0.87074 0.95447 1.98353 1.87029 1.19913 1.98974 1.21150 1.00259 0.94617 0.97805 1.21122 0.98616 0.93825 0.98954 1.23235 1.02659 0.94261 0.96780 1.23049 1.01381 0.97299 0.95277 1.20747 0.90295 0.84139 0.93175 0.96089 1.21365 1.44106 0.97172 0.93856 0.94069 1.25897 0.94263 0.99668 0.97338 1.70062 1.49740 1.33218 1.05197 0.86140 0.77999 0.83351 0.77419 1.20942 1.22312 1.12035 1.88777 1.67920 1.44334 1.29651 0.92717 0.89235 0.93402 0.82216 0.82407 0.84417 0.86592 0.89432 0.87555 0.92022 0.90069 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.71 71.98 0.63 -3.37 16 2 C 0.12 3.89 1.08 -11.07 -0.01 3.88 16 3 C -0.08 -2.46 4.81 -19.86 -0.10 -2.55 16 4 C -0.10 -2.15 8.75 22.27 0.19 -1.96 16 5 C -0.11 -2.21 9.83 22.29 0.22 -1.99 16 6 C -0.05 -1.08 6.32 22.33 0.14 -0.94 16 7 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 8 C -0.12 -3.19 9.83 22.29 0.22 -2.97 16 9 C -0.11 -3.35 9.36 22.26 0.21 -3.14 16 10 C -0.13 -3.59 5.04 31.86 0.16 -3.43 16 11 C -0.13 -4.77 6.53 32.05 0.21 -4.56 16 12 C 0.17 7.94 2.69 30.52 0.08 8.02 16 13 H 0.02 1.00 7.63 -2.39 -0.02 0.99 16 14 C -0.53 -30.38 9.39 25.60 0.24 -30.14 16 15 H 0.04 2.59 8.01 -2.91 -0.02 2.56 16 16 C 0.03 1.63 5.47 84.65 0.46 2.10 16 17 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 18 Si 0.93 45.71 27.07 68.60 1.86 47.56 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 21 H -0.20 -9.07 4.20 99.48 0.42 -8.66 16 22 O -0.39 -16.82 6.45 -148.98 -0.96 -17.78 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 26 H 0.16 2.55 6.86 -2.91 -0.02 2.53 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 29 H 0.12 4.14 6.37 -2.91 -0.02 4.12 16 30 H 0.09 2.10 6.90 -2.39 -0.02 2.09 16 31 H 0.11 2.19 7.82 -2.39 -0.02 2.17 16 32 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -67.52 291.28 4.58 -62.94 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.80 Total: 9.48 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 2.66 Total: -41.05 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.30 Total: -59.59 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.96 Total: -17.78 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.86 Total: 47.56 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -67.52 4.58 -62.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381105661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.775 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds