Wall clock time and date at job start Mon Mar 30 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 120.00582 * 2 1 4 4 C 1.38229 * 120.01113 * 179.72384 * 3 2 1 5 5 C 1.38258 * 120.02451 * 0.50742 * 4 3 2 6 6 C 1.50703 * 119.99275 * 179.76658 * 5 4 3 7 7 H 1.08999 * 109.82470 * 205.60575 * 6 5 4 8 8 C 1.54383 * 109.82864 * 84.72547 * 6 5 4 9 9 C 1.55308 * 102.25463 * 219.04044 * 8 6 5 10 10 C 1.54951 * 100.93819 * 34.13293 * 9 8 6 11 11 H 1.09000 * 110.31192 * 82.57262 * 10 9 8 12 12 C 1.50706 * 110.30536 * 204.64244 * 10 9 8 13 13 H 1.07995 * 120.00167 * 359.72244 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 89.99430 * 16 14 12 18 18 H 1.48494 * 109.47031 * 209.99977 * 16 14 12 19 19 H 1.48504 * 109.46680 * 329.99678 * 16 14 12 20 20 O 1.43232 * 109.90534 * 326.55024 * 6 5 4 21 21 C 1.38190 * 120.01584 * 359.49099 * 5 4 3 22 22 C 1.38337 * 120.00772 * 179.97438 * 2 1 3 23 23 Cl 1.73603 * 120.01070 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46803 * 270.02223 * 1 2 3 25 25 H 1.08997 * 109.46968 * 30.02119 * 1 2 3 26 26 H 1.09001 * 109.46610 * 150.02257 * 1 2 3 27 27 H 1.07992 * 119.99656 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.98447 * 180.27681 * 4 3 2 29 29 H 1.08995 * 110.85138 * 100.84923 * 8 6 5 30 30 H 1.09002 * 111.02403 * 337.30820 * 8 6 5 31 31 H 1.08999 * 111.12164 * 276.21809 * 9 8 6 32 32 H 1.08999 * 111.13015 * 152.04968 * 9 8 6 33 33 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.00867 * 180.22853 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1972 0.0058 5 6 4.2726 0.0002 0.0009 6 6 5.7796 0.0012 0.0019 7 1 6.1502 -0.9212 -0.4451 8 6 6.3022 0.1287 1.4490 9 6 7.5224 1.0740 1.2767 10 6 7.0257 1.9891 0.1292 11 1 6.3928 2.7831 0.5254 12 6 8.1969 2.5771 -0.6150 13 1 9.2051 2.3374 -0.3113 14 6 7.9810 3.4252 -1.6805 15 7 9.0030 3.9387 -2.3296 16 14 6.2371 3.8460 -2.2011 17 1 5.7791 5.0532 -1.4676 18 1 6.2073 4.1130 -3.6615 19 1 5.3384 2.7059 -1.8880 20 8 6.2670 1.1285 -0.7351 21 6 3.5826 -1.1971 0.0010 22 6 2.1989 -1.1979 0.0005 23 17 1.3314 -2.7017 0.0019 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6584 2.1323 -0.0004 28 1 4.1202 2.1327 0.0103 29 1 6.6146 -0.8413 1.8355 30 1 5.5511 0.5793 2.0978 31 1 8.4112 0.5177 0.9788 32 1 7.7064 1.6477 2.1850 33 1 8.8512 4.5357 -3.0790 34 1 4.1233 -2.1321 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381227053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:19 Heat of formation + Delta-G solvation = -37.382316 kcal Electronic energy + Delta-G solvation = -17923.872640 eV Core-core repulsion = 15040.016828 eV Total energy + Delta-G solvation = -2883.855812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80923 -38.15349 -36.39616 -33.38443 -32.37834 -31.24866 -30.60529 -29.37796 -26.75153 -24.14218 -22.70788 -21.78169 -20.45467 -20.11809 -17.03353 -16.48968 -16.13269 -15.22426 -15.08523 -14.90390 -14.19287 -13.86119 -13.74722 -13.34651 -12.69617 -12.57894 -12.46273 -12.41073 -12.08068 -11.83243 -11.53973 -11.17494 -11.00787 -10.97173 -10.81994 -10.57017 -10.35310 -9.93874 -9.73049 -9.48041 -8.75319 -8.60952 -8.48200 -8.20505 -6.13605 -4.22171 1.26881 1.33734 2.13087 3.34225 3.41926 3.63710 3.67992 4.49356 4.65425 4.77936 4.86913 5.06534 5.17014 5.24475 5.37555 5.45859 5.49039 5.50310 5.64213 5.66136 5.84153 5.90147 6.06315 6.07687 6.14640 6.32903 6.34252 6.45742 6.51251 6.62530 6.79799 6.93081 7.15179 7.58136 8.23063 8.40537 8.88357 9.50257 10.97010 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.005659 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.431315 B = 4946.572954 C = 5539.315918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.087 4.087 5 C -0.074 4.074 6 C 0.111 3.889 7 H 0.077 0.923 8 C -0.146 4.146 9 C -0.135 4.135 10 C 0.171 3.829 11 H 0.027 0.973 12 C -0.523 4.523 13 H 0.078 0.922 14 C 0.084 3.916 15 N -0.891 5.891 16 Si 0.866 3.134 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.223 1.223 20 O -0.367 6.367 21 C -0.104 4.104 22 C -0.038 4.038 23 Cl -0.080 7.080 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.266 0.734 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 -9.279 6.759 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.105 4.105 5 C -0.074 4.074 6 C 0.052 3.948 7 H 0.094 0.906 8 C -0.184 4.184 9 C -0.173 4.173 10 C 0.116 3.884 11 H 0.045 0.955 12 C -0.560 4.560 13 H 0.096 0.904 14 C -0.120 4.120 15 N -0.528 5.528 16 Si 0.692 3.308 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.146 1.146 20 O -0.287 6.287 21 C -0.123 4.123 22 C -0.065 4.065 23 Cl -0.051 7.051 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.474 -9.270 6.405 19.142 hybrid contribution -0.766 0.145 -0.239 0.815 sum -16.240 -9.125 6.166 19.622 Atomic orbital electron populations 1.20819 0.90662 1.03154 1.02534 1.19692 0.96416 0.91496 1.01264 1.21007 0.94187 0.96907 1.00970 1.21256 0.93620 0.98976 0.96672 1.20443 0.97109 0.92274 0.97619 1.21446 0.87479 0.93264 0.92625 0.90572 1.23132 0.98705 1.00609 0.95959 1.23156 0.97035 0.97393 0.99670 1.20997 0.90691 0.88554 0.88147 0.95547 1.21034 0.92329 1.26647 1.15977 0.90363 1.25055 0.97445 0.94377 0.95140 1.69923 1.30961 1.31196 1.20768 0.87029 0.86423 0.79706 0.77605 1.21024 1.21701 1.14620 1.88925 1.70392 1.33497 1.35918 1.20810 0.91639 0.98659 1.01201 1.20672 0.92138 0.86144 1.07518 1.98330 1.77040 1.32668 1.97079 0.91017 0.91319 0.91090 0.85367 0.84927 0.91110 0.91368 0.90809 0.91354 0.92492 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.62 36.01 0.35 -0.80 16 2 C -0.09 -1.14 5.88 -104.58 -0.62 -1.76 16 3 C -0.11 -1.56 9.70 -39.59 -0.38 -1.94 16 4 C -0.09 -1.43 9.36 -39.58 -0.37 -1.80 16 5 C -0.07 -1.21 4.88 -104.63 -0.51 -1.72 16 6 C 0.11 1.98 3.74 -27.16 -0.10 1.88 16 7 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 8 C -0.15 -2.32 6.53 -24.78 -0.16 -2.49 16 9 C -0.13 -2.54 6.53 -24.48 -0.16 -2.70 16 10 C 0.17 3.95 2.67 -26.85 -0.07 3.88 16 11 H 0.03 0.61 7.49 -51.93 -0.39 0.23 16 12 C -0.52 -14.62 9.37 -34.44 -0.32 -14.94 16 13 H 0.08 2.34 8.00 -52.49 -0.42 1.92 16 14 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 15 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.87 21.53 27.04 -169.99 -4.60 16.93 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.22 -5.33 5.26 56.52 0.30 -5.03 16 20 O -0.37 -8.33 7.14 -35.23 -0.25 -8.59 16 21 C -0.10 -1.50 9.48 -39.55 -0.37 -1.88 16 22 C -0.04 -0.52 6.31 -39.50 -0.25 -0.77 16 23 Cl -0.08 -0.94 27.30 -51.86 -1.42 -2.36 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.13 2.36 7.33 -52.49 -0.38 1.98 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.02 7.85 -51.93 -0.41 0.62 16 31 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -30.28 295.07 -8.69 -38.97 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.57 Total: -0.24 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.07 Total: -22.71 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.25 Total: -8.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.60 Total: 16.93 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.42 Total: -2.36 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.28 -8.69 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.585 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds