Wall clock time and date at job start Mon Mar 30 2020 06:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 120.00582 * 2 1 4 4 C 1.38229 * 120.01113 * 179.72384 * 3 2 1 5 5 C 1.38258 * 120.02451 * 0.50742 * 4 3 2 6 6 C 1.50703 * 119.99275 * 179.76658 * 5 4 3 7 7 H 1.08999 * 109.82470 * 205.60575 * 6 5 4 8 8 C 1.54383 * 109.82864 * 84.72547 * 6 5 4 9 9 C 1.55308 * 102.25463 * 219.04044 * 8 6 5 10 10 C 1.54951 * 100.93819 * 34.13293 * 9 8 6 11 11 H 1.09000 * 110.31192 * 82.57262 * 10 9 8 12 12 C 1.50706 * 110.30536 * 204.64244 * 10 9 8 13 13 H 1.07995 * 120.00167 * 359.72244 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 89.99430 * 16 14 12 18 18 H 1.48494 * 109.47031 * 209.99977 * 16 14 12 19 19 H 1.48504 * 109.46680 * 329.99678 * 16 14 12 20 20 O 1.43232 * 109.90534 * 326.55024 * 6 5 4 21 21 C 1.38190 * 120.01584 * 359.49099 * 5 4 3 22 22 C 1.38337 * 120.00772 * 179.97438 * 2 1 3 23 23 Cl 1.73603 * 120.01070 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46803 * 270.02223 * 1 2 3 25 25 H 1.08997 * 109.46968 * 30.02119 * 1 2 3 26 26 H 1.09001 * 109.46610 * 150.02257 * 1 2 3 27 27 H 1.07992 * 119.99656 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.98447 * 180.27681 * 4 3 2 29 29 H 1.08995 * 110.85138 * 100.84923 * 8 6 5 30 30 H 1.09002 * 111.02403 * 337.30820 * 8 6 5 31 31 H 1.08999 * 111.12164 * 276.21809 * 9 8 6 32 32 H 1.08999 * 111.13015 * 152.04968 * 9 8 6 33 33 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.00867 * 180.22853 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1972 0.0058 5 6 4.2726 0.0002 0.0009 6 6 5.7796 0.0012 0.0019 7 1 6.1502 -0.9212 -0.4451 8 6 6.3022 0.1287 1.4490 9 6 7.5224 1.0740 1.2767 10 6 7.0257 1.9891 0.1292 11 1 6.3928 2.7831 0.5254 12 6 8.1969 2.5771 -0.6150 13 1 9.2051 2.3374 -0.3113 14 6 7.9810 3.4252 -1.6805 15 7 9.0030 3.9387 -2.3296 16 14 6.2371 3.8460 -2.2011 17 1 5.7791 5.0532 -1.4676 18 1 6.2073 4.1130 -3.6615 19 1 5.3384 2.7059 -1.8880 20 8 6.2670 1.1285 -0.7351 21 6 3.5826 -1.1971 0.0010 22 6 2.1989 -1.1979 0.0005 23 17 1.3314 -2.7017 0.0019 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6584 2.1323 -0.0004 28 1 4.1202 2.1327 0.0103 29 1 6.6146 -0.8413 1.8355 30 1 5.5511 0.5793 2.0978 31 1 8.4112 0.5177 0.9788 32 1 7.7064 1.6477 2.1850 33 1 8.8512 4.5357 -3.0790 34 1 4.1233 -2.1321 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381227053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:15 Heat of formation + Delta-G solvation = -53.959557 kcal Electronic energy + Delta-G solvation = -17924.591483 eV Core-core repulsion = 15040.016828 eV Total energy + Delta-G solvation = -2884.574655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -41.05306 -39.53975 -37.39632 -34.97746 -34.05350 -32.77165 -31.69040 -30.90655 -28.12749 -25.70892 -23.78836 -23.08636 -22.08174 -21.45960 -19.01522 -17.83907 -17.49097 -16.74235 -16.35526 -16.26486 -15.46669 -15.17973 -15.00969 -14.69632 -14.48840 -14.15952 -13.75265 -13.39545 -13.16912 -12.99926 -12.84947 -12.66812 -12.50868 -12.21218 -12.17172 -12.05355 -11.71714 -11.62270 -11.47588 -11.32427 -10.76488 -10.12627 -9.80710 -9.41873 -8.35494 -6.47940 0.17150 0.26431 1.12639 1.34661 1.39403 1.66492 2.41092 2.55811 2.93801 3.51933 3.66519 3.79202 3.86088 3.98355 4.16260 4.20564 4.31555 4.46853 4.48664 4.63580 4.72488 4.79054 4.82128 4.88621 4.93967 5.08182 5.11410 5.20899 5.25814 5.41647 5.46078 5.53781 5.66389 5.84310 6.20581 6.47954 6.73557 7.29034 8.78793 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.005659 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.431315 B = 4946.572954 C = 5539.315918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.112 4.112 4 C -0.108 4.108 5 C -0.090 4.090 6 C 0.102 3.898 7 H 0.083 0.917 8 C -0.130 4.130 9 C -0.133 4.133 10 C 0.171 3.829 11 H 0.029 0.971 12 C -0.531 4.531 13 H 0.041 0.959 14 C 0.027 3.973 15 N -0.941 5.941 16 Si 0.930 3.070 17 H -0.272 1.272 18 H -0.296 1.296 19 H -0.210 1.210 20 O -0.392 6.392 21 C -0.104 4.104 22 C -0.045 4.045 23 Cl -0.063 7.063 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.267 0.733 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.608 -10.584 7.799 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.127 4.127 5 C -0.091 4.091 6 C 0.044 3.956 7 H 0.101 0.899 8 C -0.167 4.167 9 C -0.171 4.171 10 C 0.116 3.884 11 H 0.047 0.953 12 C -0.569 4.569 13 H 0.059 0.941 14 C -0.173 4.173 15 N -0.581 5.581 16 Si 0.754 3.246 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.132 1.132 20 O -0.313 6.313 21 C -0.123 4.123 22 C -0.072 4.072 23 Cl -0.034 7.034 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.675 -10.595 7.467 22.732 hybrid contribution 0.218 0.439 -0.526 0.719 sum -18.456 -10.156 6.941 22.180 Atomic orbital electron populations 1.20899 0.88372 1.04084 1.03735 1.20059 0.98080 0.90914 0.99495 1.21232 0.93284 0.98339 1.00177 1.21230 0.94832 0.98203 0.98398 1.20255 0.95981 0.93168 0.99668 1.21668 0.88898 0.91617 0.93392 0.89917 1.23074 0.97165 1.01383 0.95082 1.23087 0.97924 0.97433 0.98659 1.20810 0.89269 0.89624 0.88699 0.95295 1.21380 0.92728 1.26719 1.16027 0.94077 1.25943 1.01449 0.94512 0.95372 1.70061 1.33257 1.32811 1.21935 0.86038 0.81729 0.80174 0.76667 1.19741 1.22324 1.13173 1.88786 1.70568 1.34940 1.36988 1.20909 0.92212 0.98477 1.00714 1.20821 0.92128 0.87206 1.07016 1.98338 1.76541 1.31583 1.96961 0.89544 0.89841 0.90776 0.83171 0.86856 0.88097 0.90091 0.91941 0.89785 0.92446 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.62 71.24 0.69 -1.16 16 2 C -0.08 -1.93 5.88 -19.84 -0.12 -2.04 16 3 C -0.11 -2.80 9.70 22.27 0.22 -2.58 16 4 C -0.11 -3.36 9.36 22.27 0.21 -3.15 16 5 C -0.09 -2.78 4.88 -19.87 -0.10 -2.87 16 6 C 0.10 3.50 3.74 30.32 0.11 3.62 16 7 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 8 C -0.13 -3.80 6.53 31.86 0.21 -3.60 16 9 C -0.13 -4.92 6.53 32.05 0.21 -4.71 16 10 C 0.17 7.92 2.67 30.52 0.08 8.00 16 11 H 0.03 1.33 7.49 -2.39 -0.02 1.32 16 12 C -0.53 -30.68 9.37 25.60 0.24 -30.44 16 13 H 0.04 2.59 8.00 -2.91 -0.02 2.57 16 14 C 0.03 1.58 5.47 84.66 0.46 2.04 16 15 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 16 Si 0.93 45.39 27.04 68.60 1.85 47.25 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.21 -9.69 5.26 99.48 0.52 -9.16 16 20 O -0.39 -17.61 7.14 -148.98 -1.06 -18.68 16 21 C -0.10 -2.74 9.48 22.29 0.21 -2.53 16 22 C -0.05 -1.09 6.31 22.33 0.14 -0.95 16 23 Cl -0.06 -1.30 27.30 -2.72 -0.07 -1.37 16 24 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.07 1.17 6.90 -2.39 -0.02 1.15 16 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.11 3.91 7.33 -2.91 -0.02 3.89 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 2.19 7.85 -2.39 -0.02 2.18 16 31 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 32 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 34 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.16 295.07 4.48 -62.67 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.91 Total: 9.88 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 2.56 Total: -40.38 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.06 Total: -18.68 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.85 Total: 47.25 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.37 kcal Total: -67.16 4.48 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.712 kcal (2) G-P(sol) polarization free energy of solvation -67.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.00 seconds