Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 120.00359 * 2 1 4 4 C 1.38216 * 120.01074 * 179.72333 * 3 2 1 5 5 C 1.38261 * 120.02680 * 0.50575 * 4 3 2 6 6 C 1.50709 * 119.99422 * 179.77267 * 5 4 3 7 7 H 1.08997 * 109.86532 * 159.27642 * 6 5 4 8 8 C 1.54100 * 109.87308 * 280.43665 * 6 5 4 9 9 C 1.54980 * 104.25218 * 121.59135 * 8 6 5 10 10 C 1.54995 * 102.01553 * 20.66359 * 9 8 6 11 11 H 1.08999 * 110.61920 * 81.75514 * 10 9 8 12 12 C 1.50695 * 110.61832 * 204.59776 * 10 9 8 13 13 H 1.07999 * 120.00538 * 357.81618 * 12 10 9 14 14 C 1.37881 * 119.99661 * 177.81966 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.43741 * 109.87795 * 38.26593 * 6 5 4 21 21 C 1.38193 * 120.01222 * 359.49022 * 5 4 3 22 22 C 1.38330 * 120.00876 * 179.97438 * 2 1 3 23 23 Cl 1.73596 * 120.01083 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47140 * 270.02587 * 1 2 3 25 25 H 1.09003 * 109.47422 * 30.02617 * 1 2 3 26 26 H 1.09000 * 109.46739 * 150.02363 * 1 2 3 27 27 H 1.08006 * 119.99293 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.98982 * 180.27054 * 4 3 2 29 29 H 1.09004 * 110.48222 * 240.13046 * 8 6 5 30 30 H 1.09002 * 110.49174 * 2.64230 * 8 6 5 31 31 H 1.09000 * 110.84167 * 262.53334 * 9 8 6 32 32 H 1.09000 * 111.04983 * 138.88239 * 9 8 6 33 33 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 34 34 H 1.08004 * 120.00439 * 180.27925 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2725 0.0004 0.0010 6 6 5.7796 0.0015 0.0021 7 1 6.1504 -0.9586 0.3609 8 6 6.3043 0.2707 -1.4216 9 6 7.1730 1.5455 -1.2733 10 6 7.4862 1.5479 0.2447 11 1 8.3176 0.8787 0.4661 12 6 7.7897 2.9447 0.7217 13 1 7.8021 3.7647 0.0190 14 6 8.0517 3.1759 2.0555 15 7 8.0362 2.1775 2.9115 16 14 8.4286 4.9073 2.6469 17 1 7.1648 5.5845 3.0336 18 1 9.0856 5.6710 1.5559 19 1 9.3351 4.8429 3.8214 20 8 6.2669 1.0595 0.8443 21 6 3.5825 -1.1970 0.0011 22 6 2.1988 -1.1979 0.0005 23 17 1.3314 -2.7015 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6582 2.1325 -0.0004 28 1 4.1202 2.1329 0.0102 29 1 6.9131 -0.5645 -1.7680 30 1 5.4752 0.4472 -2.1068 31 1 6.6086 2.4344 -1.5555 32 1 8.0886 1.4657 -1.8592 33 1 7.8400 1.2785 2.6044 34 1 4.1232 -2.1319 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381227055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = -48.223184 kcal Electronic energy + Delta-G solvation = -17792.138153 eV Core-core repulsion = 14907.812246 eV Total energy + Delta-G solvation = -2884.325907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69401 -38.04877 -36.34529 -33.48726 -32.37871 -31.09666 -30.55046 -28.87468 -26.25844 -23.94163 -22.67066 -21.76919 -20.66737 -20.08049 -17.22496 -16.31304 -15.96881 -15.17069 -15.11853 -14.09150 -14.00752 -13.89879 -13.73737 -13.45509 -13.09331 -12.59877 -12.46756 -12.30106 -11.78643 -11.57331 -11.31732 -11.08650 -10.92497 -10.82025 -10.71825 -10.49293 -10.43398 -10.11423 -9.90117 -8.90583 -8.67357 -8.56925 -8.32964 -8.19510 -6.40606 -4.19455 1.34412 1.40651 2.18798 3.42557 3.45277 3.60921 3.75708 4.49456 4.70638 4.84054 4.97782 5.18948 5.24595 5.36528 5.43389 5.53003 5.55451 5.56644 5.69197 5.73537 5.90033 5.99258 6.10122 6.15503 6.20773 6.41634 6.43814 6.54626 6.62107 6.63908 6.87641 7.01392 7.20697 7.98121 8.25470 8.42445 8.82510 9.62728 11.00592 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.004830 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.265608 B = 5795.177622 C = 6143.426404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.062 4.062 6 C 0.107 3.893 7 H 0.059 0.941 8 C -0.146 4.146 9 C -0.137 4.137 10 C 0.188 3.812 11 H 0.021 0.979 12 C -0.605 4.605 13 H 0.058 0.942 14 C 0.032 3.968 15 N -0.889 5.889 16 Si 1.071 2.929 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.283 1.283 20 O -0.361 6.361 21 C -0.105 4.105 22 C -0.040 4.040 23 Cl -0.081 7.081 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.279 0.721 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -5.775 -7.637 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.097 4.097 5 C -0.063 4.063 6 C 0.048 3.952 7 H 0.077 0.923 8 C -0.184 4.184 9 C -0.175 4.175 10 C 0.134 3.866 11 H 0.038 0.962 12 C -0.642 4.642 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.524 5.524 16 Si 0.899 3.101 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.209 1.209 20 O -0.281 6.281 21 C -0.123 4.123 22 C -0.066 4.066 23 Cl -0.052 7.052 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.613 -4.964 -6.106 14.028 hybrid contribution -0.390 -1.243 -1.557 2.030 sum -12.003 -6.206 -7.663 15.534 Atomic orbital electron populations 1.20818 0.90695 1.03006 1.02631 1.19698 0.96395 0.91518 1.01176 1.21017 0.94216 0.96844 1.01066 1.21255 0.93488 0.99144 0.95795 1.20006 0.95948 0.92345 0.97964 1.21403 0.88549 0.93826 0.91445 0.92278 1.22985 0.99657 0.99237 0.96525 1.23105 0.98361 0.96030 1.00039 1.20897 0.83385 0.95331 0.87008 0.96159 1.21886 1.53205 0.92447 0.96656 0.92402 1.25892 0.93083 1.05421 0.93278 1.70652 1.42580 1.01729 1.37406 0.83523 0.76843 0.73981 0.75719 1.21299 1.21372 1.20890 1.89287 1.42445 1.49020 1.47398 1.20816 0.91713 0.98607 1.01211 1.20626 0.92047 0.86121 1.07806 1.98326 1.77034 1.32744 1.97108 0.90964 0.91342 0.91161 0.85312 0.84402 0.91673 0.91605 0.91508 0.91979 0.90957 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.62 36.01 0.35 -0.87 16 2 C -0.09 -1.19 5.88 -104.59 -0.62 -1.81 16 3 C -0.11 -1.64 9.70 -39.59 -0.38 -2.03 16 4 C -0.08 -1.36 9.36 -39.58 -0.37 -1.74 16 5 C -0.06 -1.10 4.76 -104.63 -0.50 -1.59 16 6 C 0.11 2.09 3.63 -27.30 -0.10 1.99 16 7 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 8 C -0.15 -2.55 6.63 -25.11 -0.17 -2.72 16 9 C -0.14 -2.79 6.57 -24.63 -0.16 -2.95 16 10 C 0.19 4.74 2.66 -26.83 -0.07 4.67 16 11 H 0.02 0.55 8.00 -51.93 -0.42 0.13 16 12 C -0.60 -16.88 8.82 -34.44 -0.30 -17.18 16 13 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 14 C 0.03 0.91 5.43 -17.82 -0.10 0.81 16 15 N -0.89 -27.10 13.58 55.43 0.75 -26.35 16 16 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.36 -8.99 9.21 -35.23 -0.32 -9.32 16 21 C -0.10 -1.63 9.46 -39.55 -0.37 -2.00 16 22 C -0.04 -0.57 6.31 -39.50 -0.25 -0.82 16 23 Cl -0.08 -1.01 27.30 -51.86 -1.42 -2.43 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 27 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.14 2.61 7.74 -52.48 -0.41 2.20 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 31 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.28 8.60 6.65 -40.82 -0.27 8.33 16 34 H 0.13 1.81 8.05 -52.48 -0.42 1.38 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -30.29 299.62 -9.02 -39.31 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.42 Total: 0.67 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -3.05 Total: -26.25 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.75 Total: -26.35 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.32 Total: -9.32 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.29 -9.02 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds