Wall clock time and date at job start Mon Mar 30 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 120.00359 * 2 1 4 4 C 1.38216 * 120.01074 * 179.72333 * 3 2 1 5 5 C 1.38261 * 120.02680 * 0.50575 * 4 3 2 6 6 C 1.50709 * 119.99422 * 179.77267 * 5 4 3 7 7 H 1.08997 * 109.86532 * 159.27642 * 6 5 4 8 8 C 1.54100 * 109.87308 * 280.43665 * 6 5 4 9 9 C 1.54980 * 104.25218 * 121.59135 * 8 6 5 10 10 C 1.54995 * 102.01553 * 20.66359 * 9 8 6 11 11 H 1.08999 * 110.61920 * 81.75514 * 10 9 8 12 12 C 1.50695 * 110.61832 * 204.59776 * 10 9 8 13 13 H 1.07999 * 120.00538 * 357.81618 * 12 10 9 14 14 C 1.37881 * 119.99661 * 177.81966 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 O 1.43741 * 109.87795 * 38.26593 * 6 5 4 21 21 C 1.38193 * 120.01222 * 359.49022 * 5 4 3 22 22 C 1.38330 * 120.00876 * 179.97438 * 2 1 3 23 23 Cl 1.73596 * 120.01083 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47140 * 270.02587 * 1 2 3 25 25 H 1.09003 * 109.47422 * 30.02617 * 1 2 3 26 26 H 1.09000 * 109.46739 * 150.02363 * 1 2 3 27 27 H 1.08006 * 119.99293 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.98982 * 180.27054 * 4 3 2 29 29 H 1.09004 * 110.48222 * 240.13046 * 8 6 5 30 30 H 1.09002 * 110.49174 * 2.64230 * 8 6 5 31 31 H 1.09000 * 110.84167 * 262.53334 * 9 8 6 32 32 H 1.09000 * 111.04983 * 138.88239 * 9 8 6 33 33 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 34 34 H 1.08004 * 120.00439 * 180.27925 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2725 0.0004 0.0010 6 6 5.7796 0.0015 0.0021 7 1 6.1504 -0.9586 0.3609 8 6 6.3043 0.2707 -1.4216 9 6 7.1730 1.5455 -1.2733 10 6 7.4862 1.5479 0.2447 11 1 8.3176 0.8787 0.4661 12 6 7.7897 2.9447 0.7217 13 1 7.8021 3.7647 0.0190 14 6 8.0517 3.1759 2.0555 15 7 8.0362 2.1775 2.9115 16 14 8.4286 4.9073 2.6469 17 1 7.1648 5.5845 3.0336 18 1 9.0856 5.6710 1.5559 19 1 9.3351 4.8429 3.8214 20 8 6.2669 1.0595 0.8443 21 6 3.5825 -1.1970 0.0011 22 6 2.1988 -1.1979 0.0005 23 17 1.3314 -2.7015 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6582 2.1325 -0.0004 28 1 4.1202 2.1329 0.0102 29 1 6.9131 -0.5645 -1.7680 30 1 5.4752 0.4472 -2.1068 31 1 6.6086 2.4344 -1.5555 32 1 8.0886 1.4657 -1.8592 33 1 7.8400 1.2785 2.6044 34 1 4.1232 -2.1319 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381227055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:30 Heat of formation + Delta-G solvation = -64.305788 kcal Electronic energy + Delta-G solvation = -17792.835547 eV Core-core repulsion = 14907.812246 eV Total energy + Delta-G solvation = -2885.023301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04761 -39.58558 -37.44542 -35.20055 -33.98577 -32.77338 -31.74388 -30.39067 -27.75390 -25.68233 -23.91503 -23.27685 -22.35623 -21.46825 -19.21390 -17.78405 -17.32672 -16.69216 -16.30747 -15.69038 -15.52936 -15.48280 -15.12813 -14.92397 -14.60939 -14.10113 -13.51491 -13.37450 -13.23732 -13.00976 -12.66246 -12.61080 -12.42738 -12.33537 -12.16944 -12.06549 -11.90619 -11.75343 -11.44511 -10.79641 -10.68709 -10.23783 -9.85448 -9.48603 -8.66684 -6.45665 0.13390 0.21551 1.07979 1.53236 1.62203 1.79713 2.51904 2.56651 3.06132 3.46158 3.67010 3.76376 3.84146 3.95039 4.02915 4.18455 4.25546 4.39496 4.44041 4.57684 4.70089 4.75512 4.77703 4.81864 4.85897 4.95292 5.07996 5.17030 5.22418 5.33960 5.41594 5.59325 5.80562 5.92028 6.10176 6.44581 6.61379 7.46373 8.73810 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.004830 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.265608 B = 5795.177622 C = 6143.426404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.110 4.110 4 C -0.100 4.100 5 C -0.082 4.082 6 C 0.098 3.902 7 H 0.061 0.939 8 C -0.132 4.132 9 C -0.129 4.129 10 C 0.179 3.821 11 H -0.006 1.006 12 C -0.620 4.620 13 H 0.058 0.942 14 C -0.021 4.021 15 N -0.920 5.920 16 Si 1.119 2.881 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.282 1.282 20 O -0.392 6.392 21 C -0.107 4.107 22 C -0.045 4.045 23 Cl -0.061 7.061 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.262 0.738 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.694 -5.770 -8.751 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.083 4.083 6 C 0.040 3.960 7 H 0.079 0.921 8 C -0.170 4.170 9 C -0.167 4.167 10 C 0.124 3.876 11 H 0.011 0.989 12 C -0.657 4.657 13 H 0.077 0.923 14 C -0.222 4.222 15 N -0.556 5.556 16 Si 0.940 3.060 17 H -0.202 1.202 18 H -0.189 1.189 19 H -0.207 1.207 20 O -0.313 6.313 21 C -0.126 4.126 22 C -0.071 4.071 23 Cl -0.032 7.032 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.171 0.829 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.501 -4.974 -7.250 16.112 hybrid contribution 0.095 -1.353 -1.249 1.844 sum -13.407 -6.328 -8.499 17.088 Atomic orbital electron populations 1.20908 0.88067 1.04399 1.03658 1.20093 0.98239 0.90771 0.99153 1.21244 0.93047 0.98452 1.00038 1.21159 0.94871 0.98009 0.97759 1.19853 0.94723 0.93417 1.00269 1.21621 0.90226 0.92280 0.91876 0.92108 1.22926 0.99935 0.98483 0.95619 1.22982 0.99597 0.97465 0.96657 1.20796 0.83070 0.93560 0.90156 0.98852 1.22305 1.52615 0.93866 0.96874 0.92334 1.27418 0.92340 1.08468 0.93975 1.70790 1.45359 1.01537 1.37920 0.82932 0.77266 0.69812 0.75974 1.20187 1.18909 1.20743 1.89185 1.42001 1.50878 1.49196 1.20899 0.92479 0.98230 1.00949 1.20772 0.91881 0.87394 1.07097 1.98333 1.76405 1.31461 1.96964 0.89939 0.89354 0.90465 0.82864 0.87014 0.89266 0.89802 0.91973 0.90355 0.92763 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.62 71.24 0.69 -1.32 16 2 C -0.08 -2.04 5.88 -19.84 -0.12 -2.16 16 3 C -0.11 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.10 -3.47 9.36 22.27 0.21 -3.26 16 5 C -0.08 -2.89 4.76 -19.87 -0.09 -2.99 16 6 C 0.10 3.89 3.63 30.22 0.11 4.00 16 7 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 8 C -0.13 -4.49 6.63 31.64 0.21 -4.28 16 9 C -0.13 -5.24 6.57 31.95 0.21 -5.03 16 10 C 0.18 9.33 2.66 30.53 0.08 9.41 16 11 H -0.01 -0.34 8.00 -2.39 -0.02 -0.36 16 12 C -0.62 -35.46 8.82 25.60 0.23 -35.24 16 13 H 0.06 3.24 7.78 -2.91 -0.02 3.22 16 14 C -0.02 -1.21 5.43 84.65 0.46 -0.75 16 15 N -0.92 -58.10 13.58 21.45 0.29 -57.81 16 16 Si 1.12 50.52 29.90 68.60 2.05 52.57 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 O -0.39 -20.31 9.21 -148.98 -1.37 -21.69 16 21 C -0.11 -3.21 9.46 22.29 0.21 -3.00 16 22 C -0.04 -1.20 6.31 22.32 0.14 -1.06 16 23 Cl -0.06 -1.36 27.30 -2.72 -0.07 -1.44 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 26 H 0.08 1.27 6.90 -2.39 -0.02 1.26 16 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.11 4.41 7.74 -2.91 -0.02 4.39 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.08 2.55 7.69 -2.39 -0.02 2.54 16 31 H 0.06 2.55 8.05 -2.39 -0.02 2.53 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.26 17.02 6.65 -92.71 -0.62 16.40 16 34 H 0.14 3.76 8.05 -2.91 -0.02 3.74 16 Total: -1.00 -67.42 299.62 4.68 -62.74 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.24 Total: 14.10 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 2.55 Total: -48.47 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.29 Total: -57.81 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.37 Total: -21.69 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.44 kcal Total: -67.42 4.68 -62.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.569 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds