Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 120.00462 * 2 1 4 4 C 1.38219 * 120.01153 * 180.23540 * 3 2 1 5 5 C 1.38272 * 120.02538 * 359.48343 * 4 3 2 6 6 C 1.50692 * 119.99271 * 180.25739 * 5 4 3 7 7 H 1.08999 * 110.33281 * 27.25149 * 6 5 4 8 8 C 1.54478 * 110.37551 * 265.00416 * 6 5 4 9 9 C 1.54512 * 104.06564 * 217.19161 * 8 6 5 10 10 C 1.54474 * 104.06174 * 359.97438 * 9 8 6 11 11 H 1.09001 * 110.37431 * 265.14993 * 10 9 8 12 12 C 1.50702 * 110.37669 * 142.92073 * 10 9 8 13 13 H 1.08002 * 119.99491 * 359.97438 * 12 10 9 14 14 C 1.37870 * 120.00552 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99831 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00209 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47219 * 59.99691 * 16 14 12 18 18 H 1.48509 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47183 * 299.99364 * 16 14 12 20 20 O 1.44426 * 104.80418 * 23.97936 * 10 9 8 21 21 C 1.38194 * 120.00893 * 0.23942 * 5 4 3 22 22 C 1.38322 * 120.00749 * 179.69969 * 2 1 3 23 23 Cl 1.73608 * 120.01434 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.47221 * 270.30441 * 1 2 3 25 25 H 1.09006 * 109.47203 * 30.29881 * 1 2 3 26 26 H 1.08997 * 109.47513 * 150.30394 * 1 2 3 27 27 H 1.08002 * 119.99694 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99072 * 179.76939 * 4 3 2 29 29 H 1.09005 * 110.51166 * 335.83547 * 8 6 5 30 30 H 1.08993 * 110.51678 * 98.40776 * 8 6 5 31 31 H 1.09007 * 110.50974 * 118.63948 * 9 8 6 32 32 H 1.08994 * 110.51120 * 241.21542 * 9 8 6 33 33 H 0.96997 * 120.00380 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.99907 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2725 0.0003 0.0010 6 6 5.7794 0.0013 0.0015 7 1 6.1574 0.9124 0.4653 8 6 6.3179 -0.1312 -1.4404 9 6 7.5685 -1.0266 -1.2934 10 6 7.6381 -1.3286 0.2199 11 1 8.3027 -0.6224 0.7177 12 6 8.1072 -2.7418 0.4519 13 1 8.3381 -3.3790 -0.3890 14 6 8.2407 -3.2217 1.7375 15 7 7.9591 -2.4459 2.7615 16 14 8.8229 -4.9732 2.0250 17 1 10.1740 -5.1489 1.4344 18 1 8.8824 -5.2419 3.4844 19 1 7.8757 -5.9210 1.3850 20 8 6.2833 -1.1624 0.6921 21 6 3.5825 -1.1970 0.0067 22 6 2.1988 -1.1978 0.0063 23 17 1.3313 -2.7016 0.0148 24 1 -0.3634 0.0055 1.0277 25 1 -0.3634 0.8873 -0.5185 26 1 -0.3634 -0.8926 -0.5091 27 1 1.6583 2.1325 -0.0004 28 1 4.1202 2.1328 -0.0087 29 1 5.5782 -0.6105 -2.0818 30 1 6.5902 0.8465 -1.8378 31 1 7.4470 -1.9486 -1.8620 32 1 8.4609 -0.4927 -1.6195 33 1 8.0533 -2.7833 3.6660 34 1 4.1232 -2.1319 0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381227056.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -41.810323 kcal Electronic energy + Delta-G solvation = -17780.684187 eV Core-core repulsion = 14896.636363 eV Total energy + Delta-G solvation = -2884.047825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.55959 -37.84492 -36.19317 -33.29794 -32.29644 -30.92552 -30.46591 -28.94507 -26.46848 -24.08499 -22.62729 -21.74009 -20.39070 -19.82264 -16.97026 -15.99085 -15.80294 -15.07641 -15.00508 -14.41585 -14.03940 -13.85452 -13.67596 -13.37992 -12.75459 -12.37893 -12.27312 -12.25650 -11.79262 -11.63689 -11.29946 -11.06059 -10.90941 -10.78256 -10.63580 -10.43926 -10.25215 -10.06026 -9.71909 -9.15643 -8.63790 -8.56331 -8.31461 -8.08410 -6.03881 -4.16829 1.36155 1.52288 2.36431 3.32034 3.36895 3.39117 3.81315 4.40919 4.78984 4.87298 5.00875 5.22967 5.29386 5.47265 5.55316 5.58054 5.58704 5.68285 5.77745 5.82739 6.00073 6.12104 6.16606 6.31116 6.36216 6.53645 6.56410 6.63284 6.74170 6.77696 6.95200 7.06921 7.47273 7.86514 8.18308 8.48409 8.93798 9.54195 11.04013 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.005820 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.828860 B = 4809.481029 C = 5615.722251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.110 4.110 5 C -0.056 4.056 6 C 0.100 3.900 7 H 0.062 0.938 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.205 3.795 11 H 0.028 0.972 12 C -0.530 4.530 13 H 0.064 0.936 14 C 0.078 3.922 15 N -0.864 5.864 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.344 6.344 21 C -0.075 4.075 22 C -0.038 4.038 23 Cl -0.078 7.078 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.263 0.737 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 6.862 -6.322 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.128 4.128 5 C -0.056 4.056 6 C 0.041 3.959 7 H 0.080 0.920 8 C -0.181 4.181 9 C -0.184 4.184 10 C 0.150 3.850 11 H 0.046 0.954 12 C -0.567 4.567 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.500 5.500 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 O -0.264 6.264 21 C -0.094 4.094 22 C -0.065 4.065 23 Cl -0.049 7.049 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.929 6.602 -5.964 14.881 hybrid contribution 0.344 -0.900 0.139 0.973 sum -11.585 5.702 -5.825 14.165 Atomic orbital electron populations 1.20809 0.90791 1.02954 1.02544 1.19670 0.96321 0.91560 1.01537 1.20824 0.93900 0.96723 1.01894 1.21037 0.93992 0.97748 1.00068 1.19885 0.95687 0.92298 0.97769 1.21627 0.88435 0.93265 0.92553 0.92034 1.22931 0.98571 0.99756 0.96801 1.23052 0.95535 0.98543 1.01293 1.20539 0.80907 0.97139 0.86399 0.95392 1.20990 1.45617 0.97748 0.92381 0.91826 1.25084 0.93973 0.97584 0.96211 1.70013 1.45610 1.35852 0.98522 0.86668 0.79305 0.84908 0.77168 1.20052 1.21145 1.19999 1.89533 1.30358 1.41973 1.64495 1.21069 0.91134 1.00211 0.96974 1.20807 0.92429 0.86225 1.07001 1.98334 1.76848 1.32692 1.96993 0.91054 0.91510 0.91104 0.85537 0.85650 0.91842 0.92037 0.91664 0.92567 0.92768 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.61 36.01 0.35 -0.87 16 2 C -0.09 -1.24 5.88 -104.59 -0.62 -1.86 16 3 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 4 C -0.11 -1.60 9.71 -39.58 -0.38 -1.98 16 5 C -0.06 -0.99 4.95 -104.63 -0.52 -1.51 16 6 C 0.10 1.99 3.50 -27.11 -0.09 1.90 16 7 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 8 C -0.14 -2.54 6.62 -25.16 -0.17 -2.71 16 9 C -0.15 -3.01 6.62 -25.16 -0.17 -3.17 16 10 C 0.21 5.25 3.06 -27.11 -0.08 5.17 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.53 -14.80 8.78 -34.44 -0.30 -15.10 16 13 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 14 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 15 N -0.86 -25.68 13.07 55.43 0.72 -24.96 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.34 -8.79 9.80 -35.23 -0.35 -9.14 16 21 C -0.08 -1.39 9.16 -39.55 -0.36 -1.75 16 22 C -0.04 -0.61 6.31 -39.50 -0.25 -0.86 16 23 Cl -0.08 -1.16 27.30 -51.86 -1.42 -2.57 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.07 0.75 6.90 -51.93 -0.36 0.39 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.35 7.71 -51.93 -0.40 0.95 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.14 2.99 7.53 -52.49 -0.40 2.60 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -30.17 301.10 -9.07 -39.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.47 Total: -0.97 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -3.08 Total: -22.54 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.72 Total: -24.96 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.35 Total: -9.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.17 -9.07 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227056.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.576 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds