Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 120.00462 * 2 1 4 4 C 1.38219 * 120.01153 * 180.23540 * 3 2 1 5 5 C 1.38272 * 120.02538 * 359.48343 * 4 3 2 6 6 C 1.50692 * 119.99271 * 180.25739 * 5 4 3 7 7 H 1.08999 * 110.33281 * 27.25149 * 6 5 4 8 8 C 1.54478 * 110.37551 * 265.00416 * 6 5 4 9 9 C 1.54512 * 104.06564 * 217.19161 * 8 6 5 10 10 C 1.54474 * 104.06174 * 359.97438 * 9 8 6 11 11 H 1.09001 * 110.37431 * 265.14993 * 10 9 8 12 12 C 1.50702 * 110.37669 * 142.92073 * 10 9 8 13 13 H 1.08002 * 119.99491 * 359.97438 * 12 10 9 14 14 C 1.37870 * 120.00552 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99831 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00209 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47219 * 59.99691 * 16 14 12 18 18 H 1.48509 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47183 * 299.99364 * 16 14 12 20 20 O 1.44426 * 104.80418 * 23.97936 * 10 9 8 21 21 C 1.38194 * 120.00893 * 0.23942 * 5 4 3 22 22 C 1.38322 * 120.00749 * 179.69969 * 2 1 3 23 23 Cl 1.73608 * 120.01434 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.47221 * 270.30441 * 1 2 3 25 25 H 1.09006 * 109.47203 * 30.29881 * 1 2 3 26 26 H 1.08997 * 109.47513 * 150.30394 * 1 2 3 27 27 H 1.08002 * 119.99694 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99072 * 179.76939 * 4 3 2 29 29 H 1.09005 * 110.51166 * 335.83547 * 8 6 5 30 30 H 1.08993 * 110.51678 * 98.40776 * 8 6 5 31 31 H 1.09007 * 110.50974 * 118.63948 * 9 8 6 32 32 H 1.08994 * 110.51120 * 241.21542 * 9 8 6 33 33 H 0.96997 * 120.00380 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.99907 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2725 0.0003 0.0010 6 6 5.7794 0.0013 0.0015 7 1 6.1574 0.9124 0.4653 8 6 6.3179 -0.1312 -1.4404 9 6 7.5685 -1.0266 -1.2934 10 6 7.6381 -1.3286 0.2199 11 1 8.3027 -0.6224 0.7177 12 6 8.1072 -2.7418 0.4519 13 1 8.3381 -3.3790 -0.3890 14 6 8.2407 -3.2217 1.7375 15 7 7.9591 -2.4459 2.7615 16 14 8.8229 -4.9732 2.0250 17 1 10.1740 -5.1489 1.4344 18 1 8.8824 -5.2419 3.4844 19 1 7.8757 -5.9210 1.3850 20 8 6.2833 -1.1624 0.6921 21 6 3.5825 -1.1970 0.0067 22 6 2.1988 -1.1978 0.0063 23 17 1.3313 -2.7016 0.0148 24 1 -0.3634 0.0055 1.0277 25 1 -0.3634 0.8873 -0.5185 26 1 -0.3634 -0.8926 -0.5091 27 1 1.6583 2.1325 -0.0004 28 1 4.1202 2.1328 -0.0087 29 1 5.5782 -0.6105 -2.0818 30 1 6.5902 0.8465 -1.8378 31 1 7.4470 -1.9486 -1.8620 32 1 8.4609 -0.4927 -1.6195 33 1 8.0533 -2.7833 3.6660 34 1 4.1232 -2.1319 0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381227056.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -58.339188 kcal Electronic energy + Delta-G solvation = -17781.400933 eV Core-core repulsion = 14896.636363 eV Total energy + Delta-G solvation = -2884.764570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87765 -39.41730 -37.40079 -34.97562 -33.93639 -32.61450 -31.67053 -30.49742 -27.98910 -25.74008 -23.90019 -23.16307 -21.98450 -21.32585 -18.89995 -17.47860 -17.19539 -16.72170 -16.30514 -16.19528 -15.40047 -15.31526 -15.05757 -14.57278 -14.32273 -14.09228 -13.59556 -13.37788 -13.19160 -12.96225 -12.81123 -12.58431 -12.42760 -12.26149 -12.11446 -12.06855 -11.90846 -11.59635 -11.34414 -11.07153 -10.74004 -10.13272 -9.75942 -9.41501 -8.19123 -6.39200 0.18352 0.32540 1.16867 1.38345 1.41650 1.48970 2.38373 2.61200 3.03601 3.54351 3.77692 3.87557 3.99551 4.05272 4.19305 4.24694 4.39188 4.56755 4.60741 4.71045 4.78087 4.81184 4.82662 4.97412 5.00212 5.07968 5.19339 5.24654 5.33114 5.45733 5.48029 5.65639 5.71609 5.90322 6.13449 6.52796 6.88911 7.36389 8.89395 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.005820 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.828860 B = 4809.481029 C = 5615.722251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.103 4.103 4 C -0.105 4.105 5 C -0.079 4.079 6 C 0.093 3.907 7 H 0.066 0.934 8 C -0.129 4.129 9 C -0.139 4.139 10 C 0.197 3.803 11 H -0.003 1.003 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.023 3.977 15 N -0.904 5.904 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.272 1.272 20 O -0.381 6.381 21 C -0.102 4.102 22 C -0.052 4.052 23 Cl -0.076 7.076 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.171 0.829 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 8.365 -7.379 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.079 4.079 6 C 0.034 3.966 7 H 0.084 0.916 8 C -0.166 4.166 9 C -0.177 4.177 10 C 0.141 3.859 11 H 0.015 0.985 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.179 4.179 15 N -0.541 5.541 16 Si 0.784 3.216 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.198 1.198 20 O -0.301 6.301 21 C -0.121 4.121 22 C -0.078 4.078 23 Cl -0.047 7.047 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.188 0.812 28 H 0.171 0.829 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.540 8.106 -7.042 17.281 hybrid contribution 0.764 -1.290 0.457 1.567 sum -12.776 6.816 -6.585 15.908 Atomic orbital electron populations 1.20899 0.88202 1.04318 1.03564 1.20142 0.98198 0.90796 0.99494 1.21319 0.93291 0.98045 0.99396 1.21337 0.94966 0.97305 0.98671 1.19811 0.94416 0.93500 1.00197 1.21861 0.90212 0.91339 0.93160 0.91618 1.22868 0.97022 1.00978 0.95776 1.22928 0.97988 0.99276 0.97533 1.20431 0.80758 0.95326 0.89361 0.98497 1.21443 1.45659 0.99102 0.92694 0.91699 1.25957 0.94094 1.01882 0.95965 1.70153 1.47252 1.37883 0.98825 0.85602 0.79308 0.79535 0.77152 1.18499 1.20734 1.19754 1.89440 1.29991 1.44633 1.66030 1.20828 0.92361 0.99104 0.99841 1.20928 0.91710 0.87450 1.07715 1.98325 1.76470 1.32874 1.97022 0.90050 0.88595 0.91365 0.81180 0.82924 0.91356 0.88425 0.92308 0.90537 0.92879 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.61 71.24 0.68 -1.30 16 2 C -0.09 -2.12 5.88 -19.84 -0.12 -2.24 16 3 C -0.10 -2.24 9.70 22.27 0.22 -2.02 16 4 C -0.10 -2.75 9.71 22.27 0.22 -2.54 16 5 C -0.08 -2.79 4.95 -19.87 -0.10 -2.88 16 6 C 0.09 3.72 3.50 30.35 0.11 3.82 16 7 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 8 C -0.13 -4.47 6.62 31.61 0.21 -4.26 16 9 C -0.14 -5.76 6.62 31.61 0.21 -5.55 16 10 C 0.20 10.47 3.06 30.35 0.09 10.57 16 11 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 12 C -0.55 -31.93 8.78 25.60 0.22 -31.70 16 13 H 0.06 3.61 7.57 -2.91 -0.02 3.59 16 14 C 0.02 1.34 5.43 84.65 0.46 1.80 16 15 N -0.90 -55.88 13.07 21.45 0.28 -55.60 16 16 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 O -0.38 -20.41 9.80 -148.98 -1.46 -21.87 16 21 C -0.10 -3.90 9.16 22.29 0.20 -3.69 16 22 C -0.05 -1.64 6.31 22.32 0.14 -1.50 16 23 Cl -0.08 -2.26 27.30 -2.72 -0.07 -2.33 16 24 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.10 1.16 8.09 -2.38 -0.02 1.14 16 26 H 0.07 1.25 6.90 -2.39 -0.02 1.24 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.07 2.29 7.87 -2.38 -0.02 2.28 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.46 7.71 -2.38 -0.02 2.44 16 32 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.11 4.73 7.53 -2.91 -0.02 4.71 16 Total: -1.00 -69.18 301.10 4.41 -64.77 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.09 Total: 9.46 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 2.55 Total: -41.50 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.28 Total: -55.60 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.46 Total: -21.87 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -69.18 4.41 -64.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381227056.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.434 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds