Wall clock time and date at job start Mon Mar 30 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.81907 * 2 1 4 4 C 1.38228 * 120.00758 * 240.56678 * 3 2 1 5 5 C 1.38221 * 120.01477 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.02477 * 0.04495 * 5 4 3 7 7 C 1.38197 * 120.01707 * 359.97438 * 6 5 4 8 8 C 1.38334 * 120.00316 * 60.29623 * 3 2 1 9 9 Cl 1.73598 * 120.01365 * 359.97438 * 8 3 2 10 10 C 1.54371 * 109.83438 * 120.98037 * 2 1 3 11 11 C 1.55302 * 102.25306 * 98.15980 * 10 2 1 12 12 C 1.54945 * 100.94206 * 34.13213 * 11 10 2 13 13 H 1.09001 * 110.30800 * 82.47413 * 12 11 10 14 14 C 1.50703 * 110.31133 * 204.63940 * 12 11 10 15 15 H 1.08002 * 119.99999 * 357.16910 * 14 12 11 16 16 C 1.37875 * 120.00140 * 177.16695 * 14 12 11 17 17 N 1.31518 * 119.99618 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00193 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46738 * 119.99869 * 18 16 14 21 21 H 1.48497 * 109.46943 * 239.99910 * 18 16 14 22 22 O 1.43234 * 109.82915 * 239.12002 * 2 1 3 23 23 H 1.09006 * 109.46810 * 179.43315 * 1 2 3 24 24 H 1.09000 * 109.47201 * 299.42727 * 1 2 3 25 25 H 1.08995 * 109.47853 * 59.43416 * 1 2 3 26 26 H 1.08002 * 119.99524 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.98844 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.99706 * 180.02562 * 6 5 4 29 29 H 1.07988 * 120.01117 * 180.02562 * 7 6 5 30 30 H 1.08999 * 110.84905 * 216.35021 * 10 2 1 31 31 H 1.09002 * 110.84961 * 339.96691 * 10 2 1 32 32 H 1.09004 * 111.12618 * 276.21488 * 11 10 2 33 33 H 1.09004 * 111.12525 * 152.05470 * 11 10 2 34 34 H 0.96998 * 119.99959 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4178 0.0000 4 6 2.8287 1.8687 -1.0425 5 6 3.2970 3.1692 -1.0429 6 6 2.9786 4.0195 -0.0002 7 6 2.1914 3.5698 1.0428 8 6 1.7170 2.2698 1.0406 9 17 0.7214 1.7065 2.3463 10 6 2.0538 -0.7475 1.2450 11 6 2.3682 -2.1574 0.6748 12 6 2.8408 -1.7973 -0.7562 13 1 3.8900 -1.5021 -0.7450 14 6 2.6351 -2.9664 -1.6847 15 1 2.2528 -3.9005 -1.3004 16 6 2.9350 -2.8435 -3.0248 17 7 3.4010 -1.7061 -3.4927 18 14 2.6793 -4.2924 -4.1759 19 1 2.1500 -5.4476 -3.4075 20 1 1.7103 -3.9168 -5.2365 21 1 3.9751 -4.6645 -4.7984 22 8 2.0159 -0.6916 -1.1564 23 1 -0.3633 -1.0277 -0.0102 24 1 -0.3633 0.5049 0.8951 25 1 -0.3634 0.5225 -0.8848 26 1 3.0777 1.2050 -1.8573 27 1 3.9121 3.5212 -1.8578 28 1 3.3444 5.0357 -0.0012 29 1 1.9424 4.2341 1.8570 30 1 2.9571 -0.2744 1.6300 31 1 1.2852 -0.8033 2.0159 32 1 1.4732 -2.7790 0.6482 33 1 3.1638 -2.6417 1.2411 34 1 3.6116 -1.6195 -4.4356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390489858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:50 Heat of formation + Delta-G solvation = -30.832079 kcal Electronic energy + Delta-G solvation = -18497.310642 eV Core-core repulsion = 15613.738869 eV Total energy + Delta-G solvation = -2883.571772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68160 -37.72654 -36.22629 -33.13583 -31.68323 -30.99361 -30.27365 -28.91751 -26.51659 -23.75300 -22.33718 -22.17329 -20.26268 -19.42332 -16.87720 -16.52021 -15.45249 -15.35655 -14.58699 -14.51507 -13.92629 -13.54541 -13.37131 -13.34086 -12.64993 -12.33892 -12.12995 -11.92177 -11.68956 -11.42462 -11.17274 -10.98965 -10.93300 -10.61166 -10.46190 -10.19551 -10.05677 -9.86034 -9.77236 -9.07461 -8.59074 -8.53897 -8.35048 -7.95040 -6.02343 -4.13787 1.45302 1.62334 2.38549 3.29500 3.37738 3.41243 3.96454 4.42024 4.80801 5.03580 5.15739 5.30835 5.45698 5.53574 5.56436 5.62749 5.78681 5.97991 6.03282 6.21794 6.22378 6.26163 6.42064 6.45737 6.61800 6.64628 6.68506 6.73825 6.85874 6.92649 7.00719 7.23122 7.58792 7.88819 8.25856 8.61410 9.02009 9.56920 11.05508 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.006595 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.423628 B = 4244.340670 C = 4932.166235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 C -0.066 4.066 4 C -0.079 4.079 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.034 4.034 9 Cl -0.076 7.076 10 C -0.138 4.138 11 C -0.148 4.148 12 C 0.210 3.790 13 H 0.027 0.973 14 C -0.532 4.532 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.864 5.864 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.341 6.341 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.155 0.845 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 9.352 8.564 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.094 3.906 3 C -0.067 4.067 4 C -0.097 4.097 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.060 4.060 9 Cl -0.047 7.047 10 C -0.176 4.176 11 C -0.185 4.185 12 C 0.155 3.845 13 H 0.045 0.955 14 C -0.569 4.569 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.500 5.500 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 O -0.260 6.260 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.173 0.827 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.365 9.444 8.314 12.803 hybrid contribution -0.147 -0.704 -0.375 0.811 sum -2.512 8.741 7.939 12.072 Atomic orbital electron populations 1.22254 0.94466 1.02476 1.01970 1.20659 0.93532 0.87503 0.88909 1.20372 0.96856 0.96659 0.92858 1.21453 0.94358 0.95496 0.98379 1.21318 0.99978 0.94057 0.98492 1.21013 0.99050 0.99740 0.94249 1.20869 0.99560 0.93897 0.99737 1.20711 0.99245 0.94678 0.91401 1.98307 1.68535 1.89401 1.48441 1.23142 1.00568 0.96888 0.96992 1.23341 1.00983 0.95097 0.99110 1.20537 0.90381 0.84764 0.88771 0.95541 1.21145 1.45736 0.96528 0.93489 0.91884 1.25044 0.93814 0.95528 0.98303 1.70018 1.41852 1.24099 1.14031 0.86585 0.77841 0.82838 0.80976 1.19677 1.20882 1.20953 1.88842 1.67487 1.44170 1.25512 0.91992 0.91481 0.92784 0.82694 0.85753 0.85827 0.85646 0.91907 0.91132 0.91520 0.91988 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.46 37.16 0.31 -2.55 16 2 C 0.14 2.74 0.95 -91.05 -0.09 2.65 16 3 C -0.07 -1.24 4.63 -104.59 -0.48 -1.72 16 4 C -0.08 -1.48 9.39 -39.59 -0.37 -1.85 16 5 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 6 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 7 C -0.12 -1.69 9.83 -39.54 -0.39 -2.07 16 8 C -0.03 -0.54 6.05 -39.49 -0.24 -0.78 16 9 Cl -0.08 -1.10 23.32 -51.86 -1.21 -2.31 16 10 C -0.14 -2.58 4.72 -24.79 -0.12 -2.70 16 11 C -0.15 -3.08 6.53 -24.48 -0.16 -3.24 16 12 C 0.21 5.35 3.27 -26.86 -0.09 5.26 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.53 -14.72 8.81 -34.44 -0.30 -15.02 16 15 H 0.06 1.71 7.77 -52.49 -0.41 1.30 16 16 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 17 N -0.86 -24.90 12.93 55.43 0.72 -24.18 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 O -0.34 -8.54 8.39 -35.23 -0.30 -8.84 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.07 1.09 5.02 -51.93 -0.26 0.83 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.16 3.39 7.02 -52.49 -0.37 3.02 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.06 1.15 7.85 -51.93 -0.41 0.75 16 31 H 0.07 1.18 6.86 -51.93 -0.36 0.83 16 32 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -29.08 291.26 -8.55 -37.63 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.31 Total: 1.30 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.82 Total: -24.17 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.72 Total: -24.18 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.30 Total: -8.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.21 Total: -2.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.08 -8.55 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390489858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.798 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds