Wall clock time and date at job start Mon Mar 30 2020 07:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.81907 * 2 1 4 4 C 1.38228 * 120.00758 * 240.56678 * 3 2 1 5 5 C 1.38221 * 120.01477 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.02477 * 0.04495 * 5 4 3 7 7 C 1.38197 * 120.01707 * 359.97438 * 6 5 4 8 8 C 1.38334 * 120.00316 * 60.29623 * 3 2 1 9 9 Cl 1.73598 * 120.01365 * 359.97438 * 8 3 2 10 10 C 1.54371 * 109.83438 * 120.98037 * 2 1 3 11 11 C 1.55302 * 102.25306 * 98.15980 * 10 2 1 12 12 C 1.54945 * 100.94206 * 34.13213 * 11 10 2 13 13 H 1.09001 * 110.30800 * 82.47413 * 12 11 10 14 14 C 1.50703 * 110.31133 * 204.63940 * 12 11 10 15 15 H 1.08002 * 119.99999 * 357.16910 * 14 12 11 16 16 C 1.37875 * 120.00140 * 177.16695 * 14 12 11 17 17 N 1.31518 * 119.99618 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00193 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46738 * 119.99869 * 18 16 14 21 21 H 1.48497 * 109.46943 * 239.99910 * 18 16 14 22 22 O 1.43234 * 109.82915 * 239.12002 * 2 1 3 23 23 H 1.09006 * 109.46810 * 179.43315 * 1 2 3 24 24 H 1.09000 * 109.47201 * 299.42727 * 1 2 3 25 25 H 1.08995 * 109.47853 * 59.43416 * 1 2 3 26 26 H 1.08002 * 119.99524 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.98844 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.99706 * 180.02562 * 6 5 4 29 29 H 1.07988 * 120.01117 * 180.02562 * 7 6 5 30 30 H 1.08999 * 110.84905 * 216.35021 * 10 2 1 31 31 H 1.09002 * 110.84961 * 339.96691 * 10 2 1 32 32 H 1.09004 * 111.12618 * 276.21488 * 11 10 2 33 33 H 1.09004 * 111.12525 * 152.05470 * 11 10 2 34 34 H 0.96998 * 119.99959 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4178 0.0000 4 6 2.8287 1.8687 -1.0425 5 6 3.2970 3.1692 -1.0429 6 6 2.9786 4.0195 -0.0002 7 6 2.1914 3.5698 1.0428 8 6 1.7170 2.2698 1.0406 9 17 0.7214 1.7065 2.3463 10 6 2.0538 -0.7475 1.2450 11 6 2.3682 -2.1574 0.6748 12 6 2.8408 -1.7973 -0.7562 13 1 3.8900 -1.5021 -0.7450 14 6 2.6351 -2.9664 -1.6847 15 1 2.2528 -3.9005 -1.3004 16 6 2.9350 -2.8435 -3.0248 17 7 3.4010 -1.7061 -3.4927 18 14 2.6793 -4.2924 -4.1759 19 1 2.1500 -5.4476 -3.4075 20 1 1.7103 -3.9168 -5.2365 21 1 3.9751 -4.6645 -4.7984 22 8 2.0159 -0.6916 -1.1564 23 1 -0.3633 -1.0277 -0.0102 24 1 -0.3633 0.5049 0.8951 25 1 -0.3634 0.5225 -0.8848 26 1 3.0777 1.2050 -1.8573 27 1 3.9121 3.5212 -1.8578 28 1 3.3444 5.0357 -0.0012 29 1 1.9424 4.2341 1.8570 30 1 2.9571 -0.2744 1.6300 31 1 1.2852 -0.8033 2.0159 32 1 1.4732 -2.7790 0.6482 33 1 3.1638 -2.6417 1.2411 34 1 3.6116 -1.6195 -4.4356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390489858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:49 Heat of formation + Delta-G solvation = -46.372717 kcal Electronic energy + Delta-G solvation = -18497.984534 eV Core-core repulsion = 15613.738869 eV Total energy + Delta-G solvation = -2884.245665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13522 -39.22884 -37.41357 -35.03765 -33.43885 -32.64756 -31.55638 -30.35210 -28.40617 -25.46487 -23.68533 -23.57103 -22.04600 -20.91362 -18.62326 -18.18403 -17.03018 -16.73891 -16.50438 -15.87527 -15.44681 -15.07942 -14.72753 -14.65863 -14.24915 -14.06628 -13.77601 -13.61695 -13.15396 -12.88001 -12.79264 -12.55234 -12.35556 -12.25577 -12.17767 -12.00425 -11.59604 -11.46589 -11.20036 -10.95891 -10.70198 -9.97004 -9.76505 -9.51246 -8.13924 -6.33605 0.23271 0.39221 1.17648 1.39627 1.41076 1.53075 2.40936 2.72551 3.03018 3.49560 3.67097 3.91207 4.02660 4.07192 4.19396 4.36124 4.47275 4.49089 4.64386 4.66786 4.75559 4.82387 4.91950 5.00777 5.04583 5.12470 5.15955 5.32087 5.36337 5.49034 5.61473 5.68485 5.76617 5.95702 6.19337 6.61732 7.06131 7.41829 8.94032 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.006595 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.423628 B = 4244.340670 C = 4932.166235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.123 3.877 3 C -0.090 4.090 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.112 4.112 8 C -0.040 4.040 9 Cl -0.062 7.062 10 C -0.124 4.124 11 C -0.141 4.141 12 C 0.206 3.794 13 H -0.011 1.011 14 C -0.554 4.554 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.897 5.897 18 Si 0.959 3.041 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.276 1.276 22 O -0.371 6.371 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.142 0.858 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 10.757 10.197 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.082 3.918 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.138 4.138 6 C -0.124 4.124 7 C -0.130 4.130 8 C -0.067 4.067 9 Cl -0.033 7.033 10 C -0.161 4.161 11 C -0.178 4.178 12 C 0.151 3.849 13 H 0.007 0.993 14 C -0.591 4.591 15 H 0.082 0.918 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.784 3.216 19 H -0.187 1.187 20 H -0.208 1.208 21 H -0.201 1.201 22 O -0.290 6.290 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.983 10.845 9.963 15.026 hybrid contribution 0.052 -1.036 -0.838 1.334 sum -2.931 9.809 9.125 13.714 Atomic orbital electron populations 1.22233 0.93476 1.02191 1.02664 1.20939 0.94352 0.88572 0.87926 1.20216 0.98313 0.96205 0.94344 1.21177 0.96891 0.96845 0.98002 1.21523 0.99631 0.92707 0.99904 1.21470 0.97375 1.01062 0.92534 1.21333 0.98049 0.93125 1.00514 1.20777 0.99619 0.95240 0.91045 1.98303 1.68107 1.89470 1.47377 1.23074 1.01301 0.94952 0.96818 1.23235 1.01304 0.96670 0.96622 1.20349 0.88868 0.84577 0.91152 0.99292 1.21533 1.45736 0.97458 0.94416 0.91802 1.25902 0.93538 0.98247 1.00013 1.70166 1.42868 1.26115 1.14301 0.85514 0.77901 0.79583 0.78636 1.18707 1.20788 1.20148 1.88758 1.67425 1.44548 1.28309 0.92683 0.88901 0.93946 0.87418 0.84023 0.81455 0.82141 0.91685 0.88660 0.91387 0.90510 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 8.46 71.98 0.61 -4.91 16 2 C 0.12 5.06 0.95 -11.07 -0.01 5.05 16 3 C -0.09 -3.37 4.63 -19.84 -0.09 -3.46 16 4 C -0.11 -4.33 9.39 22.26 0.21 -4.13 16 5 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 6 C -0.11 -2.42 10.05 22.26 0.22 -2.20 16 7 C -0.11 -2.66 9.83 22.29 0.22 -2.45 16 8 C -0.04 -1.21 6.05 22.33 0.14 -1.07 16 9 Cl -0.06 -1.61 23.32 -2.72 -0.06 -1.67 16 10 C -0.12 -4.58 4.72 31.85 0.15 -4.43 16 11 C -0.14 -5.94 6.53 32.05 0.21 -5.73 16 12 C 0.21 11.00 3.27 30.51 0.10 11.10 16 13 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 14 C -0.55 -31.78 8.81 25.60 0.23 -31.56 16 15 H 0.06 3.54 7.77 -2.91 -0.02 3.51 16 16 C 0.03 1.45 5.42 84.65 0.46 1.91 16 17 N -0.90 -54.23 12.93 21.45 0.28 -53.95 16 18 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 O -0.37 -19.62 8.39 -148.98 -1.25 -20.87 16 23 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.09 2.90 5.02 -2.39 -0.01 2.88 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.11 5.20 7.02 -2.91 -0.02 5.18 16 27 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.16 2.73 8.06 -2.92 -0.02 2.71 16 30 H 0.06 2.36 7.85 -2.39 -0.02 2.34 16 31 H 0.09 3.01 6.86 -2.39 -0.02 2.99 16 32 H 0.07 2.83 8.05 -2.38 -0.02 2.81 16 33 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -66.42 291.26 4.74 -61.68 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.09 Total: 13.40 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 2.66 Total: -45.16 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.95 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.25 Total: -20.87 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.06 Total: -1.67 kcal Total: -66.42 4.74 -61.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390489858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.306 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds