Wall clock time and date at job start Mon Mar 30 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.87003 * 2 1 4 4 C 1.38229 * 120.01238 * 119.29807 * 3 2 1 5 5 C 1.38220 * 120.01759 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.02201 * 0.02562 * 5 4 3 7 7 C 1.38190 * 120.01745 * 359.97438 * 6 5 4 8 8 C 1.38329 * 120.00141 * 299.01919 * 3 2 1 9 9 Cl 1.73606 * 120.01794 * 359.97438 * 8 3 2 10 10 C 1.54093 * 109.88185 * 238.98815 * 2 1 3 11 11 C 1.54813 * 104.19045 * 242.60364 * 10 2 1 12 12 C 1.54995 * 102.09019 * 20.88200 * 11 10 2 13 13 H 1.09007 * 110.61967 * 81.63033 * 12 11 10 14 14 C 1.50699 * 110.61837 * 204.47291 * 12 11 10 15 15 H 1.07999 * 119.99792 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00166 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00061 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00117 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47277 * 119.99662 * 18 16 14 21 21 H 1.48497 * 109.47076 * 239.99645 * 18 16 14 22 22 O 1.43751 * 109.87945 * 121.15595 * 2 1 3 23 23 H 1.09002 * 109.47153 * 181.00995 * 1 2 3 24 24 H 1.09001 * 109.46832 * 61.01186 * 1 2 3 25 25 H 1.09004 * 109.47261 * 301.01167 * 1 2 3 26 26 H 1.08001 * 119.99144 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.98664 * 179.97438 * 5 4 3 28 28 H 1.08006 * 119.98866 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.01039 * 179.97438 * 7 6 5 30 30 H 1.08999 * 110.49015 * 1.28480 * 10 2 1 31 31 H 1.09004 * 110.49232 * 123.92763 * 10 2 1 32 32 H 1.09009 * 110.90384 * 139.07420 * 11 10 2 33 33 H 1.08988 * 110.91004 * 262.68027 * 11 10 2 34 34 H 0.96999 * 120.00193 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 2.8281 1.8685 1.0438 5 6 3.2975 3.1685 1.0442 6 6 2.9808 4.0186 0.0008 7 6 2.1953 3.5689 -1.0433 8 6 1.7308 2.2653 -1.0476 9 17 0.7504 1.6972 -2.3629 10 6 2.0540 -0.7466 -1.2419 11 6 2.8325 -1.9515 -0.6600 12 6 2.2281 -2.0723 0.7621 13 1 1.2827 -2.6141 0.7327 14 6 3.1978 -2.7508 1.6951 15 1 4.1613 -3.0748 1.3302 16 6 2.8551 -2.9578 3.0144 17 7 1.6820 -2.5628 3.4588 18 14 4.0574 -3.7981 4.1709 19 1 5.2979 -4.1422 3.4307 20 1 4.3875 -2.8825 5.2926 21 1 3.4424 -5.0381 4.7088 22 8 2.0188 -0.6994 1.1569 23 1 -0.3633 -1.0275 0.0181 24 1 -0.3633 0.4980 -0.8989 25 1 -0.3634 0.5295 0.8808 26 1 3.0754 1.2050 1.8593 27 1 3.9111 3.5206 1.8603 28 1 3.3476 5.0345 0.0018 29 1 1.9477 4.2331 -1.8581 30 1 1.2238 -1.0907 -1.8588 31 1 2.7197 -0.1055 -1.8199 32 1 2.6432 -2.8542 -1.2410 33 1 3.9003 -1.7383 -0.6120 34 1 1.4407 -2.7088 4.3869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390489859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:52 Heat of formation + Delta-G solvation = -47.565137 kcal Electronic energy + Delta-G solvation = -18455.733357 eV Core-core repulsion = 15571.435985 eV Total energy + Delta-G solvation = -2884.297372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.14275 -39.26486 -37.41087 -35.04538 -33.44960 -32.62437 -31.58144 -30.31234 -28.53534 -25.56121 -23.69555 -23.57631 -21.93591 -20.90798 -18.83855 -17.99343 -16.96519 -16.76487 -16.34123 -16.11128 -15.35691 -15.14038 -14.79624 -14.59463 -14.48577 -14.25168 -13.68386 -13.57490 -13.18080 -12.88192 -12.80219 -12.48578 -12.31775 -12.30707 -12.12558 -12.03561 -11.61586 -11.42063 -11.23873 -10.99719 -10.74409 -10.06178 -9.78617 -9.52823 -8.17539 -6.37830 0.22339 0.37931 1.17687 1.39429 1.40495 1.53230 2.39433 2.71946 2.99463 3.46897 3.69131 3.95754 4.03700 4.06673 4.18084 4.32914 4.45355 4.47370 4.62148 4.63285 4.73439 4.81596 4.93790 4.97430 5.03787 5.11086 5.14565 5.30715 5.36046 5.47609 5.57576 5.62461 5.73587 5.93964 6.16071 6.59363 6.93303 7.37536 8.90953 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.006516 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.787201 B = 4296.252129 C = 4879.651184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 C -0.077 4.077 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.042 4.042 9 Cl -0.064 7.064 10 C -0.123 4.123 11 C -0.142 4.142 12 C 0.205 3.795 13 H -0.004 1.004 14 C -0.549 4.549 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.902 5.902 18 Si 0.962 3.038 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.275 1.275 22 O -0.373 6.373 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.040 0.960 26 H 0.109 0.891 27 H 0.147 0.853 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 12.625 -9.842 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.080 3.920 3 C -0.078 4.078 4 C -0.128 4.128 5 C -0.134 4.134 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.068 4.068 9 Cl -0.035 7.035 10 C -0.161 4.161 11 C -0.179 4.179 12 C 0.149 3.851 13 H 0.014 0.986 14 C -0.586 4.586 15 H 0.082 0.918 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.786 3.214 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.201 1.201 22 O -0.293 6.293 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.165 0.835 28 H 0.187 0.813 29 H 0.178 0.822 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.654 12.662 -9.620 15.915 hybrid contribution 0.095 -1.014 0.768 1.275 sum 0.749 11.649 -8.851 14.649 Atomic orbital electron populations 1.22366 0.94796 1.01618 1.02577 1.20886 0.93487 0.89468 0.88131 1.19816 0.98453 0.95033 0.94518 1.21116 0.96955 0.96890 0.97868 1.21548 0.99506 0.92486 0.99894 1.21491 0.97194 1.01176 0.92511 1.21335 0.98050 0.92867 1.00614 1.20784 0.99930 0.95290 0.90836 1.98315 1.69056 1.89404 1.46677 1.22915 1.00092 0.96640 0.96461 1.23112 0.99673 0.97960 0.97205 1.20501 0.93313 0.80329 0.90938 0.98618 1.21422 1.02821 1.38360 0.95983 0.91760 1.25946 0.96747 0.95099 1.00009 1.70177 1.21924 1.45882 1.15953 0.85468 0.79280 0.78118 0.78520 1.18620 1.20582 1.20059 1.89151 1.85152 1.23167 1.31789 0.93604 0.89011 0.94058 0.87299 0.83505 0.81346 0.82170 0.90007 0.90605 0.90593 0.92228 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.13 8.35 71.98 0.60 -5.53 16 2 C 0.12 5.03 0.87 -11.17 -0.01 5.02 16 3 C -0.08 -2.83 4.63 -19.84 -0.09 -2.93 16 4 C -0.11 -4.03 9.39 22.26 0.21 -3.82 16 5 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 6 C -0.11 -2.23 10.04 22.26 0.22 -2.00 16 7 C -0.11 -2.51 9.83 22.29 0.22 -2.29 16 8 C -0.04 -1.23 5.82 22.33 0.13 -1.10 16 9 Cl -0.06 -1.68 23.64 -2.72 -0.06 -1.75 16 10 C -0.12 -4.62 4.66 31.58 0.15 -4.47 16 11 C -0.14 -6.10 6.55 31.90 0.21 -5.89 16 12 C 0.20 10.96 3.03 30.53 0.09 11.06 16 13 H 0.00 -0.22 8.12 -2.38 -0.02 -0.24 16 14 C -0.55 -31.56 8.81 25.60 0.23 -31.33 16 15 H 0.06 3.58 7.77 -2.91 -0.02 3.55 16 16 C 0.02 1.38 5.44 84.65 0.46 1.84 16 17 N -0.90 -54.95 13.13 21.45 0.28 -54.66 16 18 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 22 O -0.37 -19.78 8.86 -148.98 -1.32 -21.10 16 23 H 0.04 1.88 8.12 -2.39 -0.02 1.87 16 24 H 0.09 3.02 5.11 -2.39 -0.01 3.00 16 25 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.11 4.78 7.03 -2.91 -0.02 4.76 16 27 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 28 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.08 2.76 7.66 -2.39 -0.02 2.75 16 31 H 0.08 2.61 7.05 -2.39 -0.02 2.59 16 32 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -67.00 291.64 4.66 -62.35 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.09 Total: 13.08 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.64 Total: -44.34 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.32 Total: -21.10 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.06 Total: -1.75 kcal Total: -67.00 4.66 -62.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390489859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.784 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds