Wall clock time and date at job start Mon Mar 30 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.87254 * 2 1 4 4 C 1.38236 * 120.00590 * 240.17469 * 3 2 1 5 5 C 1.38225 * 120.01073 * 179.74816 * 4 3 2 6 6 C 1.38268 * 120.02473 * 0.54648 * 5 4 3 7 7 C 1.38194 * 120.01083 * 359.70756 * 6 5 4 8 8 C 1.38327 * 120.00379 * 60.44585 * 3 2 1 9 9 Cl 1.73597 * 120.01572 * 0.02562 * 8 3 2 10 10 C 1.54099 * 109.88040 * 121.16558 * 2 1 3 11 11 C 1.54812 * 104.18952 * 117.39308 * 10 2 1 12 12 C 1.54992 * 102.09147 * 339.11921 * 11 10 2 13 13 H 1.09005 * 110.61954 * 278.52638 * 12 11 10 14 14 C 1.50698 * 110.62052 * 155.52675 * 12 11 10 15 15 H 1.08004 * 119.99772 * 4.47414 * 14 12 11 16 16 C 1.37872 * 120.00261 * 184.47752 * 14 12 11 17 17 N 1.31518 * 120.00112 * 179.97438 * 16 14 12 18 18 Si 1.86807 * 120.00085 * 359.97438 * 16 14 12 19 19 H 1.48498 * 109.46974 * 90.00320 * 18 16 14 20 20 H 1.48499 * 109.46655 * 210.00144 * 18 16 14 21 21 H 1.48501 * 109.46624 * 330.00040 * 18 16 14 22 22 O 1.43745 * 109.87687 * 238.99498 * 2 1 3 23 23 H 1.08999 * 109.47409 * 179.55146 * 1 2 3 24 24 H 1.09008 * 109.47312 * 299.55479 * 1 2 3 25 25 H 1.09003 * 109.47124 * 59.54989 * 1 2 3 26 26 H 1.07995 * 119.99740 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.98701 * 180.24976 * 5 4 3 28 28 H 1.08004 * 119.99222 * 179.72216 * 6 5 4 29 29 H 1.08009 * 120.00060 * 180.02562 * 7 6 5 30 30 H 1.09000 * 110.48694 * 236.07043 * 10 2 1 31 31 H 1.09001 * 110.48278 * 358.71255 * 10 2 1 32 32 H 1.08996 * 110.90812 * 97.31955 * 11 10 2 33 33 H 1.09000 * 110.90395 * 220.92375 * 11 10 2 34 34 H 0.96999 * 120.00264 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 2.8371 1.8650 -1.0385 5 6 3.3027 3.1665 -1.0412 6 6 2.9831 4.0178 0.0003 7 6 2.1928 3.5697 1.0416 8 6 1.7217 2.2687 1.0420 9 17 0.7298 1.7048 2.3504 10 6 2.0539 -0.7500 1.2400 11 6 2.8324 -1.9534 0.6548 12 6 2.2280 -2.0703 -0.7676 13 1 1.2812 -2.6097 -0.7392 14 6 3.1976 -2.7463 -1.7024 15 1 4.1310 -3.1357 -1.3232 16 6 2.8934 -2.8677 -3.0416 17 7 3.7399 -3.4572 -3.8575 18 14 1.2788 -2.1949 -3.6974 19 1 1.4667 -0.7846 -4.1228 20 1 0.8394 -3.0081 -4.8596 21 1 0.2472 -2.2572 -2.6311 22 8 2.0187 -0.6963 -1.1587 23 1 -0.3634 -1.0276 -0.0080 24 1 -0.3634 0.5069 0.8940 25 1 -0.3633 0.5208 -0.8859 26 1 3.0914 1.1990 -1.8497 27 1 3.9204 3.5171 -1.8548 28 1 3.3509 5.0333 -0.0001 29 1 1.9429 4.2350 1.8550 30 1 2.7196 -0.1104 1.8196 31 1 1.2236 -1.0956 1.8559 32 1 3.9002 -1.7400 0.6074 33 1 2.6431 -2.8575 1.2334 34 1 3.5257 -3.5430 -4.7996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390489860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:56 Heat of formation + Delta-G solvation = -44.672965 kcal Electronic energy + Delta-G solvation = -18593.024239 eV Core-core repulsion = 15708.852280 eV Total energy + Delta-G solvation = -2884.171958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29034 -39.41842 -37.44259 -35.09326 -33.72243 -32.79552 -31.62696 -30.44951 -28.90995 -25.44631 -23.76966 -23.54855 -21.89048 -21.06773 -19.12337 -18.20139 -17.12731 -16.89900 -16.41509 -16.07615 -15.30407 -15.15325 -14.97565 -14.71219 -14.63078 -14.51606 -13.85091 -13.76801 -13.25664 -12.93823 -12.87318 -12.49355 -12.42245 -12.29388 -12.14544 -11.90508 -11.62915 -11.45311 -11.35625 -11.22296 -10.87618 -10.34556 -9.82716 -9.57582 -8.38459 -6.50615 0.18724 0.33905 1.14335 1.32263 1.39079 1.49209 2.33283 2.67613 2.79693 3.33300 3.59272 3.88195 3.96541 3.98794 4.14651 4.25155 4.36896 4.41735 4.53047 4.54958 4.69388 4.71322 4.89440 4.91565 4.96094 5.04277 5.10540 5.25768 5.28941 5.39453 5.46885 5.53372 5.56280 5.89692 6.18516 6.38471 6.65226 7.24489 8.75782 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.007475 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.424331 B = 3744.902767 C = 4195.406312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 C -0.080 4.080 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.040 4.040 9 Cl -0.060 7.060 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.030 0.970 14 C -0.523 4.523 15 H 0.046 0.954 16 C 0.033 3.967 17 N -0.936 5.936 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.253 1.253 22 O -0.390 6.390 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 15.825 11.917 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.084 3.916 3 C -0.081 4.081 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.066 4.066 9 Cl -0.031 7.031 10 C -0.161 4.161 11 C -0.171 4.171 12 C 0.114 3.886 13 H 0.048 0.952 14 C -0.561 4.561 15 H 0.064 0.936 16 C -0.167 4.167 17 N -0.575 5.575 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.177 1.177 22 O -0.311 6.311 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.163 0.837 28 H 0.185 0.815 29 H 0.179 0.821 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.237 15.800 11.677 20.613 hybrid contribution -0.337 -0.509 -0.697 0.926 sum -6.575 15.292 10.981 19.941 Atomic orbital electron populations 1.22497 0.93881 1.02600 1.03453 1.20955 0.93933 0.89253 0.87455 1.19769 0.98665 0.94933 0.94698 1.21135 0.96986 0.96885 0.98064 1.21553 0.99502 0.92612 0.99911 1.21495 0.97102 1.01164 0.92496 1.21340 0.97863 0.93057 1.00505 1.20750 0.99690 0.95238 0.90960 1.98319 1.68247 1.89454 1.47060 1.22939 1.00415 0.96375 0.96346 1.22960 0.99599 0.98451 0.96089 1.21041 0.94462 0.80181 0.92886 0.95210 1.21190 1.05281 1.35921 0.93658 0.93565 1.25818 1.00271 0.93458 0.97188 1.70035 1.38208 1.44230 1.05067 0.85513 0.80508 0.77972 0.77584 1.20351 1.21905 1.17735 1.88945 1.85535 1.23475 1.33117 0.92422 0.88562 0.93330 0.87164 0.83706 0.81480 0.82148 0.90464 0.89011 0.92681 0.89873 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 8.34 71.98 0.60 -4.91 16 2 C 0.12 4.57 0.87 -11.17 -0.01 4.56 16 3 C -0.08 -2.66 4.63 -19.84 -0.09 -2.75 16 4 C -0.11 -3.85 9.39 22.27 0.21 -3.64 16 5 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 6 C -0.10 -2.05 10.05 22.27 0.22 -1.83 16 7 C -0.11 -2.27 9.83 22.29 0.22 -2.05 16 8 C -0.04 -1.06 5.83 22.32 0.13 -0.93 16 9 Cl -0.06 -1.40 23.67 -2.72 -0.06 -1.46 16 10 C -0.12 -4.11 4.69 31.58 0.15 -3.96 16 11 C -0.13 -5.34 6.55 31.89 0.21 -5.13 16 12 C 0.17 8.24 2.48 30.53 0.08 8.32 16 13 H 0.03 1.46 7.33 -2.38 -0.02 1.44 16 14 C -0.52 -30.76 9.41 25.60 0.24 -30.52 16 15 H 0.05 2.95 8.02 -2.91 -0.02 2.93 16 16 C 0.03 1.96 5.47 84.65 0.46 2.42 16 17 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 18 Si 0.96 48.43 26.33 68.60 1.81 50.24 16 19 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.25 -12.15 6.59 99.48 0.66 -11.49 16 22 O -0.39 -18.31 6.97 -148.98 -1.04 -19.35 16 23 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 24 H 0.10 2.66 5.04 -2.38 -0.01 2.64 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.11 4.53 7.02 -2.91 -0.02 4.51 16 27 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.08 2.41 7.11 -2.39 -0.02 2.39 16 31 H 0.09 2.64 7.67 -2.39 -0.02 2.62 16 32 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -68.02 286.46 4.69 -63.33 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.04 Total: 9.26 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 2.64 Total: -43.19 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.30 Total: -58.83 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.04 Total: -19.35 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.81 Total: 50.24 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.06 Total: -1.46 kcal Total: -68.02 4.69 -63.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390489860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.662 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds