Wall clock time and date at job start Mon Mar 30 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.99027 * 2 1 4 4 C 1.38329 * 119.98210 * 180.27476 * 3 2 1 5 5 Cl 1.73604 * 120.00743 * 179.69328 * 4 3 2 6 6 C 1.38369 * 119.97911 * 359.42109 * 4 3 2 7 7 C 1.38199 * 119.97978 * 0.59753 * 6 4 3 8 8 C 1.38214 * 119.99617 * 180.02562 * 2 1 3 9 9 C 1.50692 * 119.98623 * 0.02562 * 8 2 1 10 10 H 1.08999 * 110.27707 * 324.29735 * 9 8 2 11 11 C 1.54954 * 110.30866 * 86.39025 * 9 8 2 12 12 C 1.55418 * 100.89038 * 155.28711 * 11 9 8 13 13 C 1.54382 * 102.31127 * 325.99041 * 12 11 9 14 14 H 1.08996 * 109.90454 * 261.72488 * 13 12 11 15 15 C 1.50703 * 109.82737 * 140.79919 * 13 12 11 16 16 H 1.07994 * 120.00216 * 0.41440 * 15 13 12 17 17 C 1.37880 * 119.99859 * 180.40826 * 15 13 12 18 18 N 1.31513 * 119.99685 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00333 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46740 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46907 * 120.00269 * 19 17 15 22 22 H 1.48501 * 109.47306 * 240.00890 * 19 17 15 23 23 O 1.43236 * 107.58896 * 21.28591 * 13 12 11 24 24 H 1.08999 * 109.46669 * 90.00432 * 1 2 3 25 25 H 1.09001 * 109.47119 * 209.99993 * 1 2 3 26 26 H 1.09000 * 109.47461 * 330.00886 * 1 2 3 27 27 H 1.08002 * 120.00456 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01285 * 180.27303 * 6 4 3 29 29 H 1.08000 * 119.99082 * 179.67859 * 7 6 4 30 30 H 1.08991 * 111.12327 * 273.27632 * 11 9 8 31 31 H 1.09001 * 111.12346 * 37.44541 * 11 9 8 32 32 H 1.09000 * 110.87865 * 207.75140 * 12 11 9 33 33 H 1.09004 * 110.75898 * 84.17787 * 12 11 9 34 34 H 0.96999 * 120.00022 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0057 5 17 4.4497 2.7004 -0.0138 6 6 4.2726 -0.0015 0.0006 7 6 3.5806 -1.1977 0.0002 8 6 2.1980 -1.1970 -0.0005 9 6 1.4441 -2.5018 -0.0017 10 1 0.5360 -2.4139 0.5947 11 6 1.0964 -2.9207 -1.4524 12 6 0.9575 -4.4600 -1.2883 13 6 2.0134 -4.7723 -0.2062 14 1 2.9301 -5.1303 -0.6747 15 6 1.4815 -5.8171 0.7406 16 1 0.4945 -6.2291 0.5910 17 6 2.2551 -6.2472 1.7978 18 7 3.4569 -5.7452 1.9802 19 14 1.5956 -7.5418 2.9719 20 1 0.2287 -7.9412 2.5511 21 1 2.4867 -8.7295 2.9502 22 1 1.5474 -6.9840 4.3474 23 8 2.2744 -3.5579 0.5071 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6579 2.1326 -0.0004 28 1 5.3525 -0.0022 0.0006 29 1 4.1200 -2.1334 0.0000 30 1 0.1573 -2.4724 -1.7764 31 1 1.9061 -2.6710 -2.1382 32 1 1.1939 -4.9730 -2.2205 33 1 -0.0421 -4.7230 -0.9423 34 1 4.0010 -6.0474 2.7241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390632460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:22 Heat of formation + Delta-G solvation = -40.262084 kcal Electronic energy + Delta-G solvation = -17898.209838 eV Core-core repulsion = 15014.229150 eV Total energy + Delta-G solvation = -2883.980688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.67424 -37.77578 -36.33535 -32.96831 -32.52737 -31.04904 -30.87827 -27.92855 -26.75455 -24.69694 -22.41079 -21.44618 -20.27211 -19.94169 -16.75441 -16.47099 -16.02544 -15.29857 -14.67017 -14.45628 -14.05478 -13.84311 -13.28244 -13.00615 -12.78087 -12.62397 -12.39143 -12.16180 -11.80537 -11.73362 -11.27056 -11.07191 -10.92746 -10.71007 -10.59898 -10.46034 -10.36652 -10.17620 -9.83668 -9.24055 -8.62025 -8.55792 -8.27936 -7.84987 -6.00607 -4.14393 1.37829 1.53166 2.25004 3.28781 3.37137 3.40007 3.83758 4.41729 4.78190 4.99631 5.06178 5.23776 5.31313 5.38372 5.45465 5.56442 5.64390 5.72729 5.77484 5.94329 6.03893 6.15400 6.17016 6.33202 6.39063 6.45301 6.52397 6.59881 6.68207 6.78730 7.00432 7.10926 7.61019 7.86944 8.25564 8.54668 9.01161 9.57655 11.06113 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.004915 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.806978 B = 5695.338801 C = 6164.854940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.118 4.118 4 C -0.039 4.039 5 Cl -0.087 7.087 6 C -0.120 4.120 7 C -0.074 4.074 8 C -0.065 4.065 9 C 0.111 3.889 10 H 0.068 0.932 11 C -0.145 4.145 12 C -0.145 4.145 13 C 0.205 3.795 14 H 0.039 0.961 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.080 3.920 18 N -0.863 5.863 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.351 6.351 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.145 0.855 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 12.728 -5.575 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.066 4.066 5 Cl -0.059 7.059 6 C -0.139 4.139 7 C -0.092 4.092 8 C -0.065 4.065 9 C 0.052 3.948 10 H 0.085 0.915 11 C -0.183 4.183 12 C -0.182 4.182 13 C 0.150 3.850 14 H 0.057 0.943 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.126 4.126 18 N -0.499 5.499 19 Si 0.715 3.285 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.270 6.270 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.131 12.867 -5.306 14.081 hybrid contribution -0.276 -0.515 0.610 0.845 sum -2.408 12.353 -4.695 13.433 Atomic orbital electron populations 1.20857 0.90867 1.03175 1.02431 1.19607 0.96189 0.91694 0.99986 1.20746 0.91794 0.98151 1.03004 1.20830 0.92303 0.86483 1.06936 1.98336 1.77079 1.33288 1.97175 1.21061 1.00288 0.90716 1.01837 1.21181 0.93969 0.98019 0.96029 1.20129 0.94218 0.94580 0.97617 1.21609 0.93107 0.86547 0.93514 0.91452 1.23227 1.00934 0.97403 0.96689 1.23241 1.01696 0.93289 1.00016 1.20317 0.92865 0.83113 0.88682 0.94289 1.21423 1.02260 1.21619 1.12992 0.92218 1.25046 0.94592 0.95636 0.97334 1.70030 1.09090 1.41246 1.29522 0.86625 0.79166 0.81510 0.81155 1.19700 1.20916 1.20878 1.88791 1.60567 1.17736 1.59915 0.91027 0.90555 0.91687 0.85500 0.85332 0.83705 0.91574 0.91483 0.92106 0.91480 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.60 36.01 0.35 -1.05 16 2 C -0.07 -1.10 5.88 -104.63 -0.62 -1.71 16 3 C -0.12 -1.63 9.49 -39.55 -0.38 -2.01 16 4 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 5 Cl -0.09 -1.11 28.96 -51.86 -1.50 -2.61 16 6 C -0.12 -1.84 9.83 -39.55 -0.39 -2.23 16 7 C -0.07 -1.30 9.37 -39.59 -0.37 -1.67 16 8 C -0.07 -1.14 5.10 -104.63 -0.53 -1.67 16 9 C 0.11 2.15 3.13 -26.86 -0.08 2.07 16 10 H 0.07 1.30 6.24 -51.93 -0.32 0.98 16 11 C -0.14 -2.47 6.57 -24.42 -0.16 -2.64 16 12 C -0.14 -2.85 6.53 -24.72 -0.16 -3.01 16 13 C 0.21 5.11 3.36 -27.16 -0.09 5.02 16 14 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.55 -14.96 8.75 -34.44 -0.30 -15.26 16 16 H 0.06 1.60 7.52 -52.49 -0.39 1.20 16 17 C 0.08 2.23 5.41 -17.82 -0.10 2.13 16 18 N -0.86 -25.30 12.91 55.43 0.72 -24.58 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 O -0.35 -8.70 9.01 -35.23 -0.32 -9.02 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.97 6.06 -51.93 -0.31 0.65 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.15 2.80 7.32 -52.49 -0.38 2.42 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -29.44 299.00 -9.03 -38.47 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.32 Total: -0.08 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -3.08 Total: -22.84 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.72 Total: -24.58 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.32 Total: -9.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.44 -9.03 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390632460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.796 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds