Wall clock time and date at job start Mon Mar 30 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.99027 * 2 1 4 4 C 1.38329 * 119.98210 * 180.27476 * 3 2 1 5 5 Cl 1.73604 * 120.00743 * 179.69328 * 4 3 2 6 6 C 1.38369 * 119.97911 * 359.42109 * 4 3 2 7 7 C 1.38199 * 119.97978 * 0.59753 * 6 4 3 8 8 C 1.38214 * 119.99617 * 180.02562 * 2 1 3 9 9 C 1.50692 * 119.98623 * 0.02562 * 8 2 1 10 10 H 1.08999 * 110.27707 * 324.29735 * 9 8 2 11 11 C 1.54954 * 110.30866 * 86.39025 * 9 8 2 12 12 C 1.55418 * 100.89038 * 155.28711 * 11 9 8 13 13 C 1.54382 * 102.31127 * 325.99041 * 12 11 9 14 14 H 1.08996 * 109.90454 * 261.72488 * 13 12 11 15 15 C 1.50703 * 109.82737 * 140.79919 * 13 12 11 16 16 H 1.07994 * 120.00216 * 0.41440 * 15 13 12 17 17 C 1.37880 * 119.99859 * 180.40826 * 15 13 12 18 18 N 1.31513 * 119.99685 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00333 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46740 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46907 * 120.00269 * 19 17 15 22 22 H 1.48501 * 109.47306 * 240.00890 * 19 17 15 23 23 O 1.43236 * 107.58896 * 21.28591 * 13 12 11 24 24 H 1.08999 * 109.46669 * 90.00432 * 1 2 3 25 25 H 1.09001 * 109.47119 * 209.99993 * 1 2 3 26 26 H 1.09000 * 109.47461 * 330.00886 * 1 2 3 27 27 H 1.08002 * 120.00456 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01285 * 180.27303 * 6 4 3 29 29 H 1.08000 * 119.99082 * 179.67859 * 7 6 4 30 30 H 1.08991 * 111.12327 * 273.27632 * 11 9 8 31 31 H 1.09001 * 111.12346 * 37.44541 * 11 9 8 32 32 H 1.09000 * 110.87865 * 207.75140 * 12 11 9 33 33 H 1.09004 * 110.75898 * 84.17787 * 12 11 9 34 34 H 0.96999 * 120.00022 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0057 5 17 4.4497 2.7004 -0.0138 6 6 4.2726 -0.0015 0.0006 7 6 3.5806 -1.1977 0.0002 8 6 2.1980 -1.1970 -0.0005 9 6 1.4441 -2.5018 -0.0017 10 1 0.5360 -2.4139 0.5947 11 6 1.0964 -2.9207 -1.4524 12 6 0.9575 -4.4600 -1.2883 13 6 2.0134 -4.7723 -0.2062 14 1 2.9301 -5.1303 -0.6747 15 6 1.4815 -5.8171 0.7406 16 1 0.4945 -6.2291 0.5910 17 6 2.2551 -6.2472 1.7978 18 7 3.4569 -5.7452 1.9802 19 14 1.5956 -7.5418 2.9719 20 1 0.2287 -7.9412 2.5511 21 1 2.4867 -8.7295 2.9502 22 1 1.5474 -6.9840 4.3474 23 8 2.2744 -3.5579 0.5071 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6579 2.1326 -0.0004 28 1 5.3525 -0.0022 0.0006 29 1 4.1200 -2.1334 0.0000 30 1 0.1573 -2.4724 -1.7764 31 1 1.9061 -2.6710 -2.1382 32 1 1.1939 -4.9730 -2.2205 33 1 -0.0421 -4.7230 -0.9423 34 1 4.0010 -6.0474 2.7241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390632460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:21 Heat of formation + Delta-G solvation = -55.702348 kcal Electronic energy + Delta-G solvation = -17898.879378 eV Core-core repulsion = 15014.229150 eV Total energy + Delta-G solvation = -2884.650228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.00114 -39.31988 -37.45157 -34.77987 -33.90476 -32.54467 -32.44843 -29.55571 -27.90718 -26.46645 -23.88960 -22.69626 -21.97585 -21.34618 -18.61115 -17.94544 -17.40697 -16.77922 -16.45775 -15.86153 -15.54475 -15.06137 -14.86456 -14.36804 -14.12625 -13.88589 -13.68454 -13.60138 -13.39694 -13.03525 -12.83271 -12.44467 -12.38143 -12.24157 -12.22045 -12.04754 -11.74303 -11.66534 -11.47259 -11.06811 -10.68231 -9.91372 -9.75653 -9.36774 -8.11932 -6.33270 0.16300 0.33794 1.13124 1.39619 1.40867 1.52786 2.41311 2.60801 3.07750 3.52859 3.81879 3.86071 3.91358 3.99101 4.18617 4.28208 4.36924 4.57800 4.61077 4.69806 4.76897 4.86892 4.88990 4.95000 5.00936 5.11630 5.20530 5.25630 5.30326 5.41796 5.58355 5.73823 5.79040 5.88097 6.20229 6.61547 7.06033 7.44143 8.95075 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.004915 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.806978 B = 5695.338801 C = 6164.854940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.111 4.111 4 C -0.040 4.040 5 Cl -0.068 7.068 6 C -0.124 4.124 7 C -0.096 4.096 8 C -0.086 4.086 9 C 0.104 3.896 10 H 0.068 0.932 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.197 3.803 14 H 0.001 0.999 15 C -0.562 4.562 16 H 0.063 0.937 17 C 0.024 3.976 18 N -0.903 5.903 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.283 1.283 23 O -0.385 6.385 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 14.533 -6.011 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.066 4.066 5 Cl -0.039 7.039 6 C -0.143 4.143 7 C -0.115 4.115 8 C -0.086 4.086 9 C 0.046 3.954 10 H 0.086 0.914 11 C -0.166 4.166 12 C -0.175 4.175 13 C 0.142 3.858 14 H 0.019 0.981 15 C -0.600 4.600 16 H 0.081 0.919 17 C -0.178 4.178 18 N -0.541 5.541 19 Si 0.781 3.219 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.209 1.209 23 O -0.305 6.305 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.086 14.677 -5.756 16.286 hybrid contribution 0.367 -0.959 0.722 1.256 sum -3.719 13.718 -5.033 15.078 Atomic orbital electron populations 1.20944 0.88523 1.03882 1.03940 1.19883 0.97825 0.90748 0.98538 1.21094 0.91570 0.98993 1.01327 1.20945 0.92916 0.86829 1.05938 1.98345 1.76802 1.31727 1.97024 1.21109 1.00890 0.90481 1.01781 1.20980 0.94478 0.97689 0.98338 1.20055 0.94034 0.94758 0.99756 1.21817 0.92673 0.86172 0.94761 0.91408 1.23163 1.02835 0.95259 0.95311 1.23120 0.99946 0.95577 0.98838 1.20196 0.92680 0.83263 0.89681 0.98117 1.21868 1.02320 1.22355 1.13423 0.91885 1.25917 0.94794 0.97856 0.99235 1.70183 1.10528 1.43059 1.30315 0.85551 0.78992 0.78776 0.78539 1.18444 1.20317 1.20880 1.88703 1.62089 1.18864 1.60802 0.88960 0.91570 0.89275 0.82394 0.84308 0.87016 0.87779 0.91256 0.90555 0.91078 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.60 71.24 0.68 -1.69 16 2 C -0.07 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.11 -2.73 9.49 22.29 0.21 -2.52 16 4 C -0.04 -1.07 6.32 22.32 0.14 -0.93 16 5 Cl -0.07 -1.55 28.96 -2.72 -0.08 -1.63 16 6 C -0.12 -3.79 9.83 22.29 0.22 -3.57 16 7 C -0.10 -3.53 9.37 22.27 0.21 -3.32 16 8 C -0.09 -2.98 5.10 -19.87 -0.10 -3.08 16 9 C 0.10 4.04 3.13 30.51 0.10 4.14 16 10 H 0.07 2.60 6.24 -2.39 -0.01 2.58 16 11 C -0.13 -4.22 6.57 32.09 0.21 -4.00 16 12 C -0.14 -5.36 6.53 31.89 0.21 -5.15 16 13 C 0.20 10.23 3.36 30.32 0.10 10.33 16 14 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 15 C -0.56 -31.62 8.75 25.60 0.22 -31.39 16 16 H 0.06 3.40 7.52 -2.91 -0.02 3.37 16 17 C 0.02 1.36 5.41 84.66 0.46 1.82 16 18 N -0.90 -55.24 12.91 21.45 0.28 -54.96 16 19 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 O -0.38 -19.98 9.01 -148.98 -1.34 -21.32 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.51 6.06 -2.39 -0.01 1.49 16 26 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.11 4.75 7.32 -2.91 -0.02 4.73 16 30 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.24 8.05 -2.39 -0.02 2.23 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.70 7.66 -2.39 -0.02 2.68 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -66.11 299.00 4.52 -61.58 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.10 Total: 11.44 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 2.54 Total: -41.38 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.96 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.34 Total: -21.32 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -66.11 4.52 -61.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390632460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.882 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds