Wall clock time and date at job start Mon Mar 30 2020 08:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99494 * 2 1 4 4 H 1.48501 * 109.47098 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47434 * 119.99962 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99874 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.81878 * 61.88076 * 9 7 2 11 11 C 1.54887 * 110.75680 * 298.54430 * 9 7 2 12 12 C 1.54267 * 104.19782 * 203.74494 * 11 9 7 13 13 C 1.53877 * 106.59747 * 23.60623 * 12 11 9 14 14 H 1.09005 * 110.02912 * 119.33310 * 13 12 11 15 15 N 1.46497 * 110.03447 * 240.71774 * 13 12 11 16 16 C 1.39071 * 119.99724 * 273.54745 * 15 13 12 17 17 N 1.32393 * 119.71330 * 0.02562 * 16 15 13 18 18 C 1.31957 * 121.63499 * 179.97438 * 17 16 15 19 19 C 1.38054 * 120.88102 * 0.02562 * 18 17 16 20 20 C 1.38846 * 119.33364 * 359.97438 * 19 18 17 21 21 C 1.38424 * 118.49651 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.46392 * 180.27652 * 21 20 19 23 23 C 1.54271 * 106.59655 * 0.02562 * 13 12 11 24 24 H 0.96993 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.48767 * 85.06513 * 11 9 7 26 26 H 1.09004 * 110.48610 * 322.42232 * 11 9 7 27 27 H 1.08998 * 110.03440 * 264.32555 * 12 11 9 28 28 H 1.08998 * 110.07395 * 142.91535 * 12 11 9 29 29 H 0.97000 * 120.00226 * 93.54618 * 15 13 12 30 30 H 1.07997 * 119.56323 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.33813 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.75341 * 180.02562 * 20 19 18 33 33 H 1.08995 * 110.48749 * 95.06716 * 23 13 12 34 34 H 1.09002 * 110.48328 * 217.70900 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6420 -2.5947 -0.8983 11 6 0.3769 -2.6282 1.2725 12 6 0.1823 -4.1488 1.4452 13 6 1.3579 -4.8274 0.7205 14 1 1.9413 -5.4179 1.4270 15 7 0.8561 -5.6854 -0.3558 16 6 0.4864 -6.9981 -0.0834 17 7 0.5897 -7.4663 1.1506 18 6 0.2493 -8.7052 1.4515 19 6 -0.2300 -9.5637 0.4824 20 6 -0.3540 -9.1125 -0.8249 21 6 0.0108 -7.8082 -1.1108 22 17 -0.1302 -7.1888 -2.7264 23 6 2.2262 -3.6955 0.1333 24 1 -0.4851 0.8399 -0.0004 25 1 -0.5840 -2.1348 1.1267 26 1 0.8947 -2.2095 2.1355 27 1 -0.7616 -4.4578 0.9961 28 1 0.1952 -4.4098 2.5033 29 1 0.7817 -5.3379 -1.2584 30 1 0.3476 -9.0525 2.4694 31 1 -0.5056 -10.5760 0.7383 32 1 -0.7267 -9.7644 -1.6011 33 1 3.0425 -3.4495 0.8123 34 1 2.6147 -3.9808 -0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393580757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:44 Heat of formation + Delta-G solvation = 17.688633 kcal Electronic energy + Delta-G solvation = -17640.166314 eV Core-core repulsion = 14790.991309 eV Total energy + Delta-G solvation = -2849.175005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.20628 -37.69834 -36.52094 -34.35289 -32.26186 -32.03703 -29.46690 -28.15386 -26.62948 -24.12238 -23.29330 -22.51730 -19.34657 -19.24085 -17.92182 -16.47650 -16.44854 -16.18025 -14.75740 -14.65942 -14.56241 -14.47175 -13.58256 -13.31032 -12.92935 -12.41504 -12.40402 -11.97859 -11.66877 -11.43171 -11.09790 -10.98087 -10.79916 -10.52570 -10.33023 -10.13782 -9.77840 -9.54323 -9.42380 -9.36814 -9.12996 -8.78861 -8.35917 -7.49047 -5.99345 -4.02945 1.10628 1.41633 2.17067 3.32619 3.37577 3.39899 3.41230 3.84398 4.44846 4.56568 4.76569 5.03540 5.16458 5.32779 5.43475 5.55387 5.72317 5.80009 5.92599 6.05630 6.29202 6.40668 6.60418 6.62138 6.73561 6.77555 6.93584 7.19499 7.31773 7.48971 7.56550 7.73904 7.89857 8.03586 8.29601 8.45004 8.99038 9.61351 11.09642 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.004551 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.419471 B = 6151.576456 C = 6617.410552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.027 0.973 11 C -0.101 4.101 12 C -0.133 4.133 13 C 0.148 3.852 14 H 0.079 0.921 15 N -0.697 5.697 16 C 0.426 3.574 17 N -0.527 5.527 18 C 0.157 3.843 19 C -0.243 4.243 20 C -0.022 4.022 21 C -0.168 4.168 22 Cl -0.066 7.066 23 C -0.127 4.127 24 H 0.260 0.740 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.410 0.590 30 H 0.158 0.842 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -17.657 -0.230 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.045 0.955 11 C -0.140 4.140 12 C -0.171 4.171 13 C 0.044 3.956 14 H 0.097 0.903 15 N -0.327 5.327 16 C 0.186 3.814 17 N -0.246 5.246 18 C -0.003 4.003 19 C -0.267 4.267 20 C -0.049 4.049 21 C -0.203 4.203 22 Cl -0.038 7.038 23 C -0.165 4.165 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.248 0.752 30 H 0.175 0.825 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.089 0.911 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.764 -16.733 0.415 16.756 hybrid contribution -0.029 0.511 -1.125 1.236 sum -0.793 -16.223 -0.710 16.258 Atomic orbital electron populations 1.69947 1.05881 1.26520 1.50390 1.24967 0.94810 0.98975 0.95055 0.86710 0.79631 0.83363 0.78576 1.20355 1.21377 1.20290 1.21085 0.92761 0.90543 1.51035 0.92692 1.19576 0.91932 0.91260 0.93908 0.95472 1.22311 1.01564 0.90485 0.99610 1.22672 0.97093 0.98650 0.98724 1.21809 0.95155 0.90561 0.88056 0.90338 1.45271 1.67032 1.07566 1.12829 1.18224 0.88797 0.86410 0.87933 1.67457 1.23212 1.16375 1.17537 1.22539 0.90573 0.87586 0.99562 1.21706 1.09683 1.02097 0.93173 1.21197 0.93777 0.92647 0.97243 1.21245 1.15676 0.96462 0.86906 1.98350 1.96998 1.87318 1.21104 1.22817 0.98748 0.95611 0.99318 0.93048 0.91372 0.93377 0.92992 0.92984 0.75170 0.82511 0.84786 0.84500 0.91138 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.02 55.43 0.67 -24.78 16 2 C 0.06 1.76 5.33 -17.82 -0.10 1.66 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.98 8.54 -34.44 -0.29 -14.27 16 8 H 0.05 1.46 7.78 -52.48 -0.41 1.06 16 9 C 0.05 1.26 2.82 -89.77 -0.25 1.00 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 11 C -0.10 -2.36 5.57 -25.07 -0.14 -2.50 16 12 C -0.13 -2.59 6.59 -25.61 -0.17 -2.76 16 13 C 0.15 2.70 3.24 -66.81 -0.22 2.48 16 14 H 0.08 1.41 7.57 -51.93 -0.39 1.01 16 15 N -0.70 -11.73 5.05 -52.81 -0.27 -11.99 16 16 C 0.43 6.67 7.48 -154.93 -1.16 5.51 16 17 N -0.53 -7.98 9.21 -12.40 -0.11 -8.09 16 18 C 0.16 1.81 11.17 -17.57 -0.20 1.61 16 19 C -0.24 -2.43 10.10 -39.42 -0.40 -2.83 16 20 C -0.02 -0.25 9.97 -39.29 -0.39 -0.64 16 21 C -0.17 -2.30 6.36 -39.15 -0.25 -2.55 16 22 Cl -0.07 -0.87 27.62 -51.86 -1.43 -2.30 16 23 C -0.13 -2.55 5.85 -25.06 -0.15 -2.70 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 26 H 0.05 1.15 8.04 -51.93 -0.42 0.74 16 27 H 0.05 1.04 7.92 -51.93 -0.41 0.62 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.41 6.84 7.21 -40.82 -0.29 6.54 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 34 H 0.05 0.99 7.98 -51.93 -0.41 0.58 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -28.76 298.48 -9.77 -38.52 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.39 Total: 3.95 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.71 Total: -16.00 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.29 Total: -44.86 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.43 Total: -2.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.76 -9.77 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393580757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.213 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds