Wall clock time and date at job start Mon Mar 30 2020 08:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99494 * 2 1 4 4 H 1.48501 * 109.47098 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47434 * 119.99962 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99874 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.81878 * 61.88076 * 9 7 2 11 11 C 1.54887 * 110.75680 * 298.54430 * 9 7 2 12 12 C 1.54267 * 104.19782 * 203.74494 * 11 9 7 13 13 C 1.53877 * 106.59747 * 23.60623 * 12 11 9 14 14 H 1.09005 * 110.02912 * 119.33310 * 13 12 11 15 15 N 1.46497 * 110.03447 * 240.71774 * 13 12 11 16 16 C 1.39071 * 119.99724 * 273.54745 * 15 13 12 17 17 N 1.32393 * 119.71330 * 0.02562 * 16 15 13 18 18 C 1.31957 * 121.63499 * 179.97438 * 17 16 15 19 19 C 1.38054 * 120.88102 * 0.02562 * 18 17 16 20 20 C 1.38846 * 119.33364 * 359.97438 * 19 18 17 21 21 C 1.38424 * 118.49651 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.46392 * 180.27652 * 21 20 19 23 23 C 1.54271 * 106.59655 * 0.02562 * 13 12 11 24 24 H 0.96993 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.48767 * 85.06513 * 11 9 7 26 26 H 1.09004 * 110.48610 * 322.42232 * 11 9 7 27 27 H 1.08998 * 110.03440 * 264.32555 * 12 11 9 28 28 H 1.08998 * 110.07395 * 142.91535 * 12 11 9 29 29 H 0.97000 * 120.00226 * 93.54618 * 15 13 12 30 30 H 1.07997 * 119.56323 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.33813 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.75341 * 180.02562 * 20 19 18 33 33 H 1.08995 * 110.48749 * 95.06716 * 23 13 12 34 34 H 1.09002 * 110.48328 * 217.70900 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6420 -2.5947 -0.8983 11 6 0.3769 -2.6282 1.2725 12 6 0.1823 -4.1488 1.4452 13 6 1.3579 -4.8274 0.7205 14 1 1.9413 -5.4179 1.4270 15 7 0.8561 -5.6854 -0.3558 16 6 0.4864 -6.9981 -0.0834 17 7 0.5897 -7.4663 1.1506 18 6 0.2493 -8.7052 1.4515 19 6 -0.2300 -9.5637 0.4824 20 6 -0.3540 -9.1125 -0.8249 21 6 0.0108 -7.8082 -1.1108 22 17 -0.1302 -7.1888 -2.7264 23 6 2.2262 -3.6955 0.1333 24 1 -0.4851 0.8399 -0.0004 25 1 -0.5840 -2.1348 1.1267 26 1 0.8947 -2.2095 2.1355 27 1 -0.7616 -4.4578 0.9961 28 1 0.1952 -4.4098 2.5033 29 1 0.7817 -5.3379 -1.2584 30 1 0.3476 -9.0525 2.4694 31 1 -0.5056 -10.5760 0.7383 32 1 -0.7267 -9.7644 -1.6011 33 1 3.0425 -3.4495 0.8123 34 1 2.6147 -3.9808 -0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393580757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:44 Heat of formation + Delta-G solvation = 2.438498 kcal Electronic energy + Delta-G solvation = -17640.827609 eV Core-core repulsion = 14790.991309 eV Total energy + Delta-G solvation = -2849.836301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23052 -39.24221 -37.51809 -35.81503 -34.08733 -33.04598 -30.71244 -29.93779 -28.17289 -25.91026 -24.39116 -23.59338 -21.14876 -20.82031 -19.07551 -18.28318 -17.62388 -17.23043 -16.59424 -16.01522 -15.75121 -15.67746 -15.14073 -14.69567 -14.19841 -14.07896 -13.48617 -13.27280 -13.08048 -12.93378 -12.80198 -12.71126 -12.40903 -12.09812 -12.01151 -11.66673 -11.42949 -11.09917 -10.98430 -10.81248 -10.47407 -10.44977 -10.38017 -8.61265 -8.09989 -6.20690 0.17778 0.47832 1.18436 1.42578 1.43527 1.51077 2.24400 2.44487 2.88815 3.20443 3.62199 3.85293 3.97314 4.08490 4.15230 4.26833 4.34717 4.60904 4.72099 4.86465 4.93681 5.00889 5.07393 5.11574 5.14926 5.21766 5.39368 5.43284 5.65656 5.67323 5.92391 5.99669 6.22479 6.37768 6.39247 6.89678 7.23158 7.47159 8.97935 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.004551 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.419471 B = 6151.576456 C = 6617.410552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.045 3.955 10 H -0.003 1.003 11 C -0.093 4.093 12 C -0.118 4.118 13 C 0.166 3.834 14 H 0.087 0.913 15 N -0.710 5.710 16 C 0.401 3.599 17 N -0.553 5.553 18 C 0.145 3.855 19 C -0.221 4.221 20 C -0.023 4.023 21 C -0.181 4.181 22 Cl -0.071 7.071 23 C -0.116 4.116 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.407 0.593 30 H 0.189 0.811 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -19.885 0.319 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.026 3.974 10 H 0.016 0.984 11 C -0.131 4.131 12 C -0.157 4.157 13 C 0.061 3.939 14 H 0.106 0.894 15 N -0.342 5.342 16 C 0.164 3.836 17 N -0.272 5.272 18 C -0.013 4.013 19 C -0.244 4.244 20 C -0.049 4.049 21 C -0.215 4.215 22 Cl -0.042 7.042 23 C -0.154 4.154 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.244 0.756 30 H 0.206 0.794 31 H 0.192 0.808 32 H 0.182 0.818 33 H 0.091 0.909 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.299 -19.012 0.969 19.039 hybrid contribution -0.230 1.051 -1.280 1.672 sum -0.529 -17.961 -0.311 17.971 Atomic orbital electron populations 1.70091 1.07288 1.27147 1.51350 1.25753 0.95597 1.02396 0.94818 0.85701 0.78405 0.79202 0.78881 1.19677 1.21239 1.19495 1.21499 0.93079 0.91971 1.50645 0.92603 1.19521 0.92625 0.92248 0.92976 0.98442 1.22099 0.99428 0.93024 0.98585 1.22523 0.97605 0.95743 0.99851 1.21433 0.93957 0.90089 0.88372 0.89450 1.45057 1.68731 1.08321 1.12053 1.18367 0.90261 0.86077 0.88939 1.67426 1.24011 1.18308 1.17483 1.23182 0.89952 0.86663 1.01515 1.22172 1.06764 1.03399 0.92064 1.21627 0.92858 0.91806 0.98657 1.21418 1.16242 0.97378 0.86462 1.98345 1.97046 1.87575 1.21265 1.22648 0.98091 0.94594 1.00044 0.93212 0.94533 0.94577 0.93655 0.91560 0.75575 0.79435 0.80827 0.81829 0.90934 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.19 12.02 21.45 0.26 -53.93 16 2 C 0.01 0.74 5.33 84.65 0.45 1.19 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.50 8.54 25.60 0.22 -29.28 16 8 H 0.06 3.00 7.78 -2.91 -0.02 2.97 16 9 C 0.04 2.25 2.82 -10.24 -0.03 2.22 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.09 -4.48 5.57 31.67 0.18 -4.30 16 12 C -0.12 -4.66 6.59 31.32 0.21 -4.45 16 13 C 0.17 6.02 3.24 45.72 0.15 6.17 16 14 H 0.09 3.03 7.57 -2.38 -0.02 3.02 16 15 N -0.71 -23.86 5.05 -320.98 -1.62 -25.49 16 16 C 0.40 12.14 7.48 133.06 0.99 13.14 16 17 N -0.55 -15.72 9.21 -193.15 -1.78 -17.50 16 18 C 0.14 2.86 11.17 84.63 0.95 3.81 16 19 C -0.22 -3.49 10.10 22.37 0.23 -3.26 16 20 C -0.02 -0.44 9.97 22.46 0.22 -0.22 16 21 C -0.18 -4.68 6.36 22.55 0.14 -4.54 16 22 Cl -0.07 -1.82 27.62 -2.72 -0.08 -1.89 16 23 C -0.12 -4.69 5.85 31.68 0.19 -4.51 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.04 1.95 7.37 -2.39 -0.02 1.93 16 26 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 27 H 0.04 1.83 7.92 -2.39 -0.02 1.81 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.41 13.84 7.21 -92.71 -0.67 13.17 16 30 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 34 H 0.06 2.29 7.98 -2.39 -0.02 2.27 16 Total: -1.00 -63.46 298.48 3.14 -60.32 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.44 Total: 16.57 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 3.89 Total: -24.04 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.14 Total: -96.91 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.89 kcal Total: -63.46 3.14 -60.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393580757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.761 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds