Wall clock time and date at job start Mon Mar 30 2020 08:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48500 * 109.46882 * 240.00357 * 3 2 1 5 5 H 1.48499 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46563 * 120.00456 * 3 2 1 7 7 C 1.37882 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99871 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.05593 * 301.41419 * 9 7 2 11 11 C 1.54262 * 110.03536 * 62.83784 * 9 7 2 12 12 C 1.55031 * 104.28394 * 142.79977 * 11 9 7 13 13 C 1.54888 * 102.68302 * 322.23484 * 12 11 9 14 14 H 1.09003 * 110.48349 * 279.02678 * 13 12 11 15 15 N 1.46499 * 110.48735 * 156.51601 * 13 12 11 16 16 C 1.39071 * 119.99947 * 88.51872 * 15 13 12 17 17 N 1.32397 * 119.71130 * 359.72455 * 16 15 13 18 18 C 1.31955 * 121.63714 * 180.02562 * 17 16 15 19 19 C 1.38052 * 120.87715 * 359.97438 * 18 17 16 20 20 C 1.38841 * 119.33669 * 359.97438 * 19 18 17 21 21 C 1.38430 * 118.49583 * 359.73105 * 20 19 18 22 22 Cl 1.73598 * 120.46373 * 180.25966 * 21 20 19 23 23 C 1.53877 * 110.03033 * 180.02562 * 9 7 2 24 24 H 0.97001 * 119.99829 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.48579 * 261.57385 * 11 9 7 26 26 H 1.08999 * 110.48561 * 24.07842 * 11 9 7 27 27 H 1.08989 * 110.87461 * 203.90043 * 12 11 9 28 28 H 1.08995 * 110.69427 * 80.48205 * 12 11 9 29 29 H 0.97001 * 119.99790 * 268.23633 * 15 13 12 30 30 H 1.08003 * 119.56180 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.32967 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.75508 * 180.02562 * 20 19 18 33 33 H 1.08998 * 110.03310 * 121.42998 * 23 9 7 34 34 H 1.08996 * 110.07443 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6022 -2.5562 0.8736 11 6 0.4132 -2.6257 -1.2897 12 6 0.5052 -4.1284 -1.6597 13 6 1.9677 -4.4806 -1.2906 14 1 2.6470 -4.1688 -2.0840 15 7 2.1011 -5.9175 -1.0384 16 6 2.3841 -6.7844 -2.0883 17 7 2.5265 -6.3056 -3.3144 18 6 2.7948 -7.0936 -4.3383 19 6 2.9381 -8.4557 -4.1656 20 6 2.7976 -8.9989 -2.8956 21 6 2.5224 -8.1470 -1.8397 22 17 2.3433 -8.7705 -0.2295 23 6 2.2394 -3.6785 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 -0.6220 -2.3411 -1.1014 26 1 0.8386 -2.0109 -2.0829 27 1 0.3290 -4.2776 -2.7248 28 1 -0.1951 -4.7150 -1.0652 29 1 1.9960 -6.2637 -0.1384 30 1 2.9037 -6.6672 -5.3246 31 1 3.1572 -9.0925 -5.0100 32 1 2.9054 -10.0613 -2.7342 33 1 2.0699 -4.3077 0.8732 34 1 3.2643 -3.3077 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393580759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:54 Heat of formation + Delta-G solvation = 17.082258 kcal Electronic energy + Delta-G solvation = -17562.086478 eV Core-core repulsion = 14712.885178 eV Total energy + Delta-G solvation = -2849.201300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -40.22134 -37.64048 -36.59355 -34.51368 -32.25552 -32.06116 -29.57114 -28.12818 -26.53054 -24.10260 -23.32632 -22.44641 -19.73295 -19.07841 -17.82625 -16.62680 -16.43059 -16.27815 -14.82870 -14.64273 -14.58157 -14.38596 -13.67180 -13.23681 -12.71138 -12.47641 -12.40332 -12.04015 -11.93198 -11.34595 -11.14555 -11.04508 -10.72587 -10.61338 -10.21679 -10.08797 -9.77714 -9.57633 -9.46055 -9.41171 -9.23638 -8.72571 -8.34540 -7.52047 -5.98576 -4.01327 1.07800 1.38914 2.10100 3.33756 3.37104 3.38515 3.41259 3.82113 4.46188 4.54346 4.74599 5.00715 5.13505 5.32241 5.41622 5.58681 5.69923 5.78169 5.95107 6.03287 6.31452 6.34999 6.54971 6.63383 6.71601 6.76634 6.96661 7.21566 7.32665 7.43930 7.52677 7.74875 7.88860 8.02758 8.26928 8.46990 9.01112 9.62398 11.10875 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.004333 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.150505 B = 6460.041382 C = 6828.784057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.029 0.971 11 C -0.090 4.090 12 C -0.136 4.136 13 C 0.148 3.852 14 H 0.091 0.909 15 N -0.702 5.702 16 C 0.426 3.574 17 N -0.524 5.524 18 C 0.158 3.842 19 C -0.242 4.242 20 C -0.023 4.023 21 C -0.169 4.169 22 Cl -0.070 7.070 23 C -0.120 4.120 24 H 0.260 0.740 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.406 0.594 30 H 0.159 0.841 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.043 0.957 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -17.301 -5.927 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.175 4.175 13 C 0.045 3.955 14 H 0.109 0.891 15 N -0.331 5.331 16 C 0.187 3.813 17 N -0.242 5.242 18 C -0.001 4.001 19 C -0.265 4.265 20 C -0.049 4.049 21 C -0.204 4.204 22 Cl -0.041 7.041 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.062 0.938 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.924 -16.088 -5.892 17.576 hybrid contribution 0.453 -0.213 0.588 0.772 sum 4.377 -16.301 -5.304 17.692 Atomic orbital electron populations 1.69963 1.05865 1.26527 1.50426 1.24981 0.94828 0.98983 0.95156 0.86713 0.79642 0.83383 0.78587 1.20271 1.21372 1.20368 1.21241 0.92629 0.90508 1.50904 0.92701 1.19195 0.92275 0.91300 0.94331 0.95305 1.22270 1.00804 0.90512 0.99296 1.22987 0.95256 0.99568 0.99648 1.22086 0.97709 0.76553 0.99188 0.89133 1.45274 1.73542 1.07074 1.07259 1.18223 0.89038 0.85796 0.88280 1.67486 1.20245 1.38741 0.97755 1.22578 0.90502 0.90086 0.96947 1.21727 1.10792 0.96724 0.97285 1.21194 0.93086 0.99534 0.91071 1.21233 1.18242 0.93133 0.87743 1.98337 1.96619 1.86911 1.22266 1.22601 1.01742 0.97590 0.93935 0.93054 0.92400 0.92681 0.92880 0.92944 0.75610 0.82391 0.84720 0.84497 0.93801 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.43 55.43 0.69 -24.80 16 2 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.98 8.36 -34.44 -0.29 -14.27 16 8 H 0.05 1.47 7.33 -52.49 -0.38 1.09 16 9 C 0.05 1.17 2.82 -90.66 -0.26 0.92 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.09 -2.10 5.44 -25.00 -0.14 -2.23 16 12 C -0.14 -2.64 6.59 -24.66 -0.16 -2.80 16 13 C 0.15 2.74 3.21 -66.25 -0.21 2.53 16 14 H 0.09 1.78 7.57 -51.93 -0.39 1.39 16 15 N -0.70 -11.28 5.28 -52.26 -0.28 -11.56 16 16 C 0.43 6.52 7.48 -154.93 -1.16 5.36 16 17 N -0.52 -8.04 9.21 -12.40 -0.11 -8.15 16 18 C 0.16 1.85 11.17 -17.57 -0.20 1.65 16 19 C -0.24 -2.39 10.10 -39.43 -0.40 -2.79 16 20 C -0.02 -0.24 9.97 -39.29 -0.39 -0.63 16 21 C -0.17 -2.21 6.36 -39.15 -0.25 -2.46 16 22 Cl -0.07 -0.84 27.62 -51.86 -1.43 -2.27 16 23 C -0.12 -2.45 6.18 -25.59 -0.16 -2.60 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.06 1.43 7.97 -51.93 -0.41 1.02 16 26 H 0.05 1.36 7.85 -51.93 -0.41 0.96 16 27 H 0.05 1.01 8.14 -51.94 -0.42 0.58 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 6.06 7.00 -40.82 -0.29 5.78 16 30 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 34 H 0.06 1.29 7.37 -51.93 -0.38 0.91 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -28.84 298.12 -9.70 -38.55 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.34 Total: 3.20 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -3.70 Total: -15.71 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.30 Total: -44.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.43 Total: -2.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.84 -9.70 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393580759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.628 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds