Wall clock time and date at job start Mon Mar 30 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48500 * 109.46955 * 269.99490 * 3 2 1 5 5 H 1.48492 * 109.47304 * 29.99935 * 3 2 1 6 6 H 1.48506 * 109.46783 * 149.99682 * 3 2 1 7 7 C 1.37871 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47588 * 60.02786 * 9 7 2 11 11 C 1.53089 * 109.48027 * 180.02562 * 9 7 2 12 12 C 1.53183 * 109.16338 * 62.37452 * 11 9 7 13 13 C 1.53180 * 109.03418 * 56.98033 * 12 11 9 14 14 C 1.53090 * 109.16215 * 303.02068 * 13 12 11 15 15 H 1.08998 * 109.49097 * 297.61741 * 14 13 12 16 16 C 1.50706 * 109.47799 * 177.58828 * 14 13 12 17 17 C 1.38241 * 119.98981 * 279.78226 * 16 14 13 18 18 C 1.38210 * 120.01139 * 179.72300 * 17 16 14 19 19 C 1.38349 * 119.98969 * 0.55498 * 18 17 16 20 20 Cl 1.73598 * 120.01695 * 179.70185 * 19 18 17 21 21 C 1.38361 * 119.97127 * 359.71727 * 19 18 17 22 22 C 1.38214 * 119.98666 * 0.02562 * 21 19 18 23 23 O 1.42896 * 109.48103 * 300.00199 * 9 7 2 24 24 H 0.97000 * 120.00029 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52426 * 182.28244 * 11 9 7 26 26 H 1.09006 * 109.52279 * 302.47399 * 11 9 7 27 27 H 1.09003 * 109.54123 * 176.84633 * 12 11 9 28 28 H 1.08996 * 109.54134 * 297.02616 * 12 11 9 29 29 H 1.08994 * 109.52482 * 183.11025 * 13 12 11 30 30 H 1.09001 * 109.51779 * 62.92751 * 13 12 11 31 31 H 1.08002 * 119.99152 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.00562 * 180.27305 * 18 17 16 33 33 H 1.07998 * 120.00293 * 180.02562 * 21 19 18 34 34 H 1.07997 * 119.99198 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6250 -2.5574 -0.8899 11 6 2.2456 -3.6629 0.0018 12 6 3.0813 -3.6087 1.2844 13 6 2.1426 -3.6449 2.4943 14 6 1.1519 -2.4818 2.3967 15 1 1.6954 -1.5375 2.4282 16 6 0.1870 -2.5452 3.5526 17 6 -0.8878 -3.4135 3.5088 18 6 -1.7697 -3.4761 4.5711 19 6 -1.5833 -2.6613 5.6736 20 17 -2.6949 -2.7338 7.0049 21 6 -0.5105 -1.7884 5.7145 22 6 0.3738 -1.7305 4.6538 23 8 0.4289 -2.5748 1.1669 24 1 -0.4850 0.8400 -0.0004 25 1 1.7020 -4.6067 -0.0391 26 1 2.9023 -3.5818 -0.8644 27 1 3.7532 -4.4663 1.3184 28 1 3.6643 -2.6879 1.3011 29 1 2.7254 -3.5511 3.4105 30 1 1.5969 -4.5884 2.5037 31 1 -1.0355 -4.0466 2.6463 32 1 -2.6068 -4.1577 4.5386 33 1 -0.3643 -1.1525 6.5750 34 1 1.2109 -1.0489 4.6855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393760673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:56 Heat of formation + Delta-G solvation = -43.829208 kcal Electronic energy + Delta-G solvation = -18211.488034 eV Core-core repulsion = 15327.352664 eV Total energy + Delta-G solvation = -2884.135370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.34239 -37.80999 -36.23594 -32.82158 -32.42169 -31.48550 -30.73465 -28.62665 -25.63984 -23.65608 -22.51164 -22.24676 -20.66728 -18.98169 -16.93088 -16.39992 -15.40763 -15.17004 -14.71166 -14.27109 -13.92711 -13.59457 -13.54978 -13.16599 -13.13281 -12.70469 -12.29968 -11.83207 -11.47706 -11.28469 -11.12624 -11.03742 -10.92997 -10.64623 -10.60057 -10.35927 -10.21929 -9.77518 -9.66741 -8.81979 -8.71443 -8.50702 -8.26760 -7.77747 -6.02384 -4.18107 1.47384 1.62708 2.31301 3.25148 3.33568 3.34670 3.96504 4.36961 4.90034 5.12996 5.15361 5.29306 5.54247 5.65235 5.71713 5.77055 5.81239 5.97081 6.08462 6.16593 6.25958 6.33213 6.44681 6.50181 6.53365 6.68697 6.77957 6.91503 6.97116 7.00626 7.13249 7.20485 7.65190 7.83573 8.17200 8.77101 9.01899 9.54422 11.01670 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.006008 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.829776 B = 4659.240754 C = 5355.467720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.212 3.788 10 H 0.062 0.938 11 C -0.142 4.142 12 C -0.109 4.109 13 C -0.136 4.136 14 C 0.139 3.861 15 H 0.074 0.926 16 C -0.048 4.048 17 C -0.081 4.081 18 C -0.117 4.117 19 C -0.044 4.044 20 Cl -0.089 7.089 21 C -0.115 4.115 22 C -0.102 4.102 23 O -0.365 6.365 24 H 0.260 0.740 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -5.958 9.482 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.156 3.844 10 H 0.080 0.920 11 C -0.180 4.180 12 C -0.146 4.146 13 C -0.174 4.174 14 C 0.081 3.919 15 H 0.092 0.908 16 C -0.048 4.048 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.071 4.071 20 Cl -0.061 7.061 21 C -0.134 4.134 22 C -0.120 4.120 23 O -0.284 6.284 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.701 -5.882 9.586 11.268 hybrid contribution 0.615 1.087 0.089 1.252 sum -0.086 -4.795 9.674 10.798 Atomic orbital electron populations 1.70047 1.05807 1.26418 1.46927 1.25022 0.94646 0.98899 0.94044 0.86793 0.80093 0.84009 0.78297 1.20515 1.21146 1.19816 1.21523 0.93116 0.91081 1.54046 0.92461 1.19726 0.88624 0.91009 0.85013 0.92036 1.22186 0.99284 0.99654 0.96890 1.21444 0.97328 1.00890 0.94942 1.22113 0.98083 0.99194 0.98038 1.20413 0.89797 0.97546 0.84176 0.90837 1.20152 0.95854 0.93996 0.94816 1.21032 0.93273 0.98409 0.97160 1.21016 1.00392 0.99460 0.92655 1.20828 0.94173 1.01416 0.90656 1.98331 1.62618 1.97945 1.47177 1.20902 0.94135 0.98795 0.99569 1.20982 0.99354 0.98772 0.92941 1.87945 1.34680 1.93526 1.12250 0.92975 0.94034 0.92509 0.93959 0.91231 0.92672 0.92535 0.84694 0.85494 0.85483 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.33 12.84 55.43 0.71 -23.62 16 2 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 3 Si 0.88 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.56 -14.54 6.59 -34.44 -0.23 -14.77 16 8 H 0.06 1.47 6.87 -52.49 -0.36 1.11 16 9 C 0.21 5.15 3.16 -27.83 -0.09 5.06 16 10 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 11 C -0.14 -2.85 5.59 -26.59 -0.15 -3.00 16 12 C -0.11 -1.98 5.78 -26.54 -0.15 -2.13 16 13 C -0.14 -2.42 5.40 -26.59 -0.14 -2.57 16 14 C 0.14 2.88 2.58 -27.83 -0.07 2.81 16 15 H 0.07 1.69 6.95 -51.93 -0.36 1.33 16 16 C -0.05 -0.89 4.97 -104.62 -0.52 -1.41 16 17 C -0.08 -1.39 9.36 -39.59 -0.37 -1.76 16 18 C -0.12 -1.77 9.83 -39.55 -0.39 -2.16 16 19 C -0.04 -0.66 6.32 -39.50 -0.25 -0.91 16 20 Cl -0.09 -1.17 28.96 -51.86 -1.50 -2.67 16 21 C -0.12 -1.71 9.83 -39.54 -0.39 -2.10 16 22 C -0.10 -1.68 9.67 -39.59 -0.38 -2.07 16 23 O -0.36 -8.81 8.95 -35.23 -0.32 -9.12 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.35 6.85 -51.93 -0.36 0.99 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.14 2.32 7.77 -52.49 -0.41 1.91 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -27.78 295.84 -9.32 -37.10 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.42 Total: 1.26 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.23 Total: -22.95 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.71 Total: -23.62 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.32 Total: -9.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.78 -9.32 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.728 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds