Wall clock time and date at job start Mon Mar 30 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48500 * 109.46955 * 269.99490 * 3 2 1 5 5 H 1.48492 * 109.47304 * 29.99935 * 3 2 1 6 6 H 1.48506 * 109.46783 * 149.99682 * 3 2 1 7 7 C 1.37871 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47588 * 60.02786 * 9 7 2 11 11 C 1.53089 * 109.48027 * 180.02562 * 9 7 2 12 12 C 1.53183 * 109.16338 * 62.37452 * 11 9 7 13 13 C 1.53180 * 109.03418 * 56.98033 * 12 11 9 14 14 C 1.53090 * 109.16215 * 303.02068 * 13 12 11 15 15 H 1.08998 * 109.49097 * 297.61741 * 14 13 12 16 16 C 1.50706 * 109.47799 * 177.58828 * 14 13 12 17 17 C 1.38241 * 119.98981 * 279.78226 * 16 14 13 18 18 C 1.38210 * 120.01139 * 179.72300 * 17 16 14 19 19 C 1.38349 * 119.98969 * 0.55498 * 18 17 16 20 20 Cl 1.73598 * 120.01695 * 179.70185 * 19 18 17 21 21 C 1.38361 * 119.97127 * 359.71727 * 19 18 17 22 22 C 1.38214 * 119.98666 * 0.02562 * 21 19 18 23 23 O 1.42896 * 109.48103 * 300.00199 * 9 7 2 24 24 H 0.97000 * 120.00029 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52426 * 182.28244 * 11 9 7 26 26 H 1.09006 * 109.52279 * 302.47399 * 11 9 7 27 27 H 1.09003 * 109.54123 * 176.84633 * 12 11 9 28 28 H 1.08996 * 109.54134 * 297.02616 * 12 11 9 29 29 H 1.08994 * 109.52482 * 183.11025 * 13 12 11 30 30 H 1.09001 * 109.51779 * 62.92751 * 13 12 11 31 31 H 1.08002 * 119.99152 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.00562 * 180.27305 * 18 17 16 33 33 H 1.07998 * 120.00293 * 180.02562 * 21 19 18 34 34 H 1.07997 * 119.99198 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6250 -2.5574 -0.8899 11 6 2.2456 -3.6629 0.0018 12 6 3.0813 -3.6087 1.2844 13 6 2.1426 -3.6449 2.4943 14 6 1.1519 -2.4818 2.3967 15 1 1.6954 -1.5375 2.4282 16 6 0.1870 -2.5452 3.5526 17 6 -0.8878 -3.4135 3.5088 18 6 -1.7697 -3.4761 4.5711 19 6 -1.5833 -2.6613 5.6736 20 17 -2.6949 -2.7338 7.0049 21 6 -0.5105 -1.7884 5.7145 22 6 0.3738 -1.7305 4.6538 23 8 0.4289 -2.5748 1.1669 24 1 -0.4850 0.8400 -0.0004 25 1 1.7020 -4.6067 -0.0391 26 1 2.9023 -3.5818 -0.8644 27 1 3.7532 -4.4663 1.3184 28 1 3.6643 -2.6879 1.3011 29 1 2.7254 -3.5511 3.4105 30 1 1.5969 -4.5884 2.5037 31 1 -1.0355 -4.0466 2.6463 32 1 -2.6068 -4.1577 4.5386 33 1 -0.3643 -1.1525 6.5750 34 1 1.2109 -1.0489 4.6855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393760673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:55 Heat of formation + Delta-G solvation = -57.298538 kcal Electronic energy + Delta-G solvation = -18212.072108 eV Core-core repulsion = 15327.352664 eV Total energy + Delta-G solvation = -2884.719444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75003 -39.33771 -37.38764 -34.69641 -34.05622 -33.10966 -31.97759 -30.15961 -27.51881 -25.20140 -23.95921 -23.72105 -22.07255 -20.68920 -18.39398 -18.08765 -16.90711 -16.68987 -16.50091 -15.78006 -15.46702 -15.21030 -14.99956 -14.60876 -14.36610 -14.23654 -13.78693 -13.52090 -13.01881 -12.83253 -12.69183 -12.51011 -12.44377 -12.28881 -12.13114 -11.75564 -11.74325 -11.46586 -11.29600 -10.71765 -10.45077 -9.95058 -9.78289 -9.35076 -8.07438 -6.28323 0.20061 0.38563 1.15402 1.38885 1.40959 1.49556 2.40938 2.67986 3.13927 3.50605 3.90240 3.99387 4.03868 4.22481 4.28961 4.41983 4.48072 4.53896 4.63003 4.75194 4.80949 4.97817 5.01569 5.07004 5.23375 5.25826 5.26827 5.37183 5.39727 5.50643 5.63822 5.77730 5.83936 5.88284 6.18546 6.78670 7.15648 7.48885 8.96487 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.006008 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.829776 B = 4659.240754 C = 5355.467720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.058 0.942 9 C 0.205 3.795 10 H 0.025 0.975 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.140 3.860 15 H 0.042 0.958 16 C -0.073 4.073 17 C -0.093 4.093 18 C -0.113 4.113 19 C -0.047 4.047 20 Cl -0.068 7.068 21 C -0.110 4.110 22 C -0.110 4.110 23 O -0.387 6.387 24 H 0.258 0.742 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -6.392 11.243 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.077 0.923 9 C 0.149 3.851 10 H 0.043 0.957 11 C -0.173 4.173 12 C -0.143 4.143 13 C -0.167 4.167 14 C 0.081 3.919 15 H 0.060 0.940 16 C -0.073 4.073 17 C -0.111 4.111 18 C -0.132 4.132 19 C -0.073 4.073 20 Cl -0.040 7.040 21 C -0.128 4.128 22 C -0.129 4.129 23 O -0.306 6.306 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.016 -6.325 11.349 12.993 hybrid contribution 0.341 1.186 -0.395 1.296 sum 0.325 -5.139 10.954 12.104 Atomic orbital electron populations 1.70188 1.07333 1.26866 1.48815 1.25738 0.95290 1.02141 0.93936 0.85833 0.79092 0.80065 0.78352 1.20080 1.21349 1.18796 1.21802 0.93196 0.92031 1.52795 0.92344 1.19626 0.88746 0.92366 0.84325 0.95703 1.22065 0.98651 0.98255 0.98371 1.21431 0.97348 1.01600 0.93886 1.22058 0.97553 0.98236 0.98875 1.20452 0.90628 0.97290 0.83484 0.93994 1.20117 0.96501 0.95827 0.94899 1.21014 0.93689 0.98633 0.97788 1.21202 1.00335 0.99611 0.92020 1.20977 0.94385 1.00854 0.91089 1.98342 1.61811 1.97847 1.45968 1.21163 0.93347 0.98635 0.99688 1.21119 1.00189 0.98599 0.92948 1.87867 1.35735 1.93697 1.13348 0.93341 0.92766 0.92071 0.90600 0.92709 0.90431 0.91626 0.85465 0.83348 0.82907 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.46 12.84 21.44 0.28 -52.19 16 2 C 0.03 1.71 5.40 84.65 0.46 2.17 16 3 Si 0.94 42.75 29.54 68.60 2.03 44.77 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.56 -29.67 6.59 25.60 0.17 -29.51 16 8 H 0.06 3.01 6.87 -2.91 -0.02 2.99 16 9 C 0.21 10.27 3.16 29.88 0.09 10.37 16 10 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 11 C -0.14 -5.38 5.59 30.69 0.17 -5.20 16 12 C -0.11 -3.66 5.78 30.72 0.18 -3.49 16 13 C -0.13 -4.43 5.40 30.68 0.17 -4.27 16 14 C 0.14 5.83 2.58 29.88 0.08 5.91 16 15 H 0.04 1.99 6.95 -2.39 -0.02 1.97 16 16 C -0.07 -2.70 4.97 -19.86 -0.10 -2.80 16 17 C -0.09 -3.17 9.36 22.26 0.21 -2.96 16 18 C -0.11 -3.27 9.83 22.29 0.22 -3.05 16 19 C -0.05 -1.28 6.32 22.33 0.14 -1.14 16 20 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 21 C -0.11 -3.03 9.83 22.29 0.22 -2.81 16 22 C -0.11 -3.53 9.67 22.27 0.22 -3.32 16 23 O -0.39 -19.23 8.95 -148.98 -1.33 -20.57 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 2.06 6.85 -2.39 -0.02 2.05 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.13 4.44 7.77 -2.91 -0.02 4.41 16 32 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.14 4.04 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -60.36 295.84 4.19 -56.16 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.09 Total: 13.60 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 2.22 Total: -40.10 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.28 Total: -52.19 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.33 Total: -20.57 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -60.36 4.19 -56.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.134 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds