Wall clock time and date at job start Mon Mar 30 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47050 * 269.99799 * 3 2 1 5 5 H 1.48500 * 109.47099 * 30.00002 * 3 2 1 6 6 H 1.48497 * 109.47154 * 150.00071 * 3 2 1 7 7 C 1.37874 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.48262 * 60.01943 * 9 7 2 11 11 C 1.53093 * 109.49060 * 180.02562 * 9 7 2 12 12 C 1.53182 * 109.16415 * 177.59646 * 11 9 7 13 13 C 1.53175 * 109.04230 * 303.02444 * 12 11 9 14 14 C 1.53094 * 109.16587 * 56.96327 * 13 12 11 15 15 H 1.08997 * 109.47978 * 62.39813 * 14 13 12 16 16 C 1.50696 * 109.47984 * 182.42018 * 14 13 12 17 17 C 1.38246 * 119.98618 * 264.97730 * 16 14 13 18 18 C 1.38216 * 120.01497 * 180.02562 * 17 16 14 19 19 C 1.38357 * 119.98603 * 359.97165 * 18 17 16 20 20 Cl 1.73599 * 120.01134 * 180.02562 * 19 18 17 21 21 C 1.38347 * 119.97107 * 0.28224 * 19 18 17 22 22 C 1.38217 * 119.98914 * 359.48757 * 21 19 18 23 23 O 1.42899 * 109.42463 * 302.40815 * 14 13 12 24 24 H 0.96994 * 120.00038 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.51976 * 297.49806 * 11 9 7 26 26 H 1.08995 * 109.52243 * 57.62358 * 11 9 7 27 27 H 1.08998 * 109.54482 * 62.88320 * 12 11 9 28 28 H 1.08998 * 109.54093 * 183.06391 * 12 11 9 29 29 H 1.09001 * 109.51313 * 297.06169 * 13 12 11 30 30 H 1.09003 * 109.53224 * 176.87557 * 13 12 11 31 31 H 1.08003 * 119.99321 * 359.97438 * 17 16 14 32 32 H 1.08003 * 120.00776 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.00661 * 179.71600 * 21 19 18 34 34 H 1.07996 * 119.99353 * 180.23044 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6251 -2.5574 -0.8898 11 6 2.2457 -3.6630 0.0018 12 6 1.4732 -4.9844 0.0625 13 6 0.5780 -4.9833 1.3054 14 6 -0.3519 -3.7683 1.2540 15 1 -0.9995 -3.8429 0.3804 16 6 -1.1949 -3.7274 2.5024 17 6 -2.4613 -4.2818 2.4995 18 6 -3.2351 -4.2442 3.6441 19 6 -2.7419 -3.6519 4.7931 20 17 -3.7130 -3.6049 6.2313 21 6 -1.4765 -3.0926 4.7939 22 6 -0.7018 -3.1350 3.6501 23 8 0.4296 -2.5750 1.1673 24 1 -0.4850 0.8400 -0.0004 25 1 2.8436 -3.6322 -0.9090 26 1 2.8999 -3.5822 0.8699 27 1 0.8569 -5.0878 -0.8305 28 1 2.1763 -5.8154 0.1186 29 1 1.1978 -4.9300 2.2005 30 1 -0.0168 -5.8965 1.3269 31 1 -2.8463 -4.7438 1.6025 32 1 -4.2246 -4.6770 3.6416 33 1 -1.0928 -2.6260 5.6891 34 1 0.2874 -2.7017 3.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393760674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:59 Heat of formation + Delta-G solvation = -44.925201 kcal Electronic energy + Delta-G solvation = -17936.895189 eV Core-core repulsion = 15052.712293 eV Total energy + Delta-G solvation = -2884.182896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39730 -37.79482 -36.26434 -33.09476 -32.52917 -31.47685 -30.77085 -28.80084 -25.66825 -23.77597 -22.58463 -21.98958 -20.66920 -19.24289 -17.03858 -16.51862 -15.54570 -15.18862 -14.62284 -14.37301 -14.13874 -13.75631 -13.62052 -13.23898 -13.18703 -12.69569 -12.44384 -11.97933 -11.46177 -11.31375 -11.17864 -10.96871 -10.85969 -10.70483 -10.60383 -10.38224 -10.30783 -9.89598 -9.69937 -8.93265 -8.75933 -8.57380 -8.32335 -7.87015 -6.04013 -4.16707 1.41246 1.58339 2.27900 3.28934 3.36472 3.39314 3.90909 4.39497 4.75792 5.07927 5.11351 5.23916 5.45974 5.49861 5.58066 5.66196 5.71469 5.89297 5.98100 6.04919 6.07211 6.24406 6.27546 6.42532 6.47866 6.54397 6.65912 6.78274 6.81477 6.86011 7.01576 7.10498 7.47744 7.86856 8.24388 8.73475 9.06971 9.54022 11.03264 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.005652 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.983342 B = 4953.028987 C = 5962.743866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.220 3.780 10 H 0.014 0.986 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.120 3.880 15 H 0.052 0.948 16 C -0.051 4.051 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.043 4.043 20 Cl -0.088 7.088 21 C -0.115 4.115 22 C -0.074 4.074 23 O -0.348 6.348 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -9.460 6.336 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.164 3.836 10 H 0.032 0.968 11 C -0.182 4.182 12 C -0.158 4.158 13 C -0.177 4.177 14 C 0.060 3.940 15 H 0.070 0.930 16 C -0.052 4.052 17 C -0.124 4.124 18 C -0.135 4.135 19 C -0.069 4.069 20 Cl -0.059 7.059 21 C -0.134 4.134 22 C -0.092 4.092 23 O -0.267 6.267 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.595 -9.197 6.600 12.217 hybrid contribution 0.260 0.733 -0.029 0.778 sum -4.335 -8.464 6.571 11.559 Atomic orbital electron populations 1.70032 1.06012 1.26586 1.46737 1.25066 0.94758 0.99247 0.93661 0.86635 0.80043 0.83394 0.78135 1.20537 1.21083 1.19717 1.20986 0.92678 0.89621 1.53189 0.91775 1.19721 0.86994 0.92152 0.84696 0.96814 1.22265 0.99625 0.95172 1.01169 1.21617 0.98345 0.98479 0.97335 1.22148 0.98553 0.97888 0.99064 1.20643 0.91921 0.88465 0.92927 0.93018 1.20005 0.93951 0.95772 0.95425 1.20916 0.93550 1.00201 0.97712 1.20876 1.00248 1.00757 0.91620 1.20853 0.93392 1.04448 0.88222 1.98335 1.71326 1.97549 1.38716 1.21058 0.92714 1.00152 0.99470 1.21099 1.00680 0.96480 0.90934 1.88378 1.57550 1.34566 1.46239 0.92928 0.92410 0.92452 0.92609 0.92973 0.91662 0.92482 0.85411 0.85438 0.85358 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 12.84 55.43 0.71 -24.22 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.46 8.79 -34.44 -0.30 -14.77 16 8 H 0.06 1.71 7.74 -52.48 -0.41 1.31 16 9 C 0.22 5.48 2.50 -27.84 -0.07 5.41 16 10 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 11 C -0.14 -2.94 5.36 -26.59 -0.14 -3.08 16 12 C -0.12 -2.03 6.03 -26.55 -0.16 -2.19 16 13 C -0.14 -2.32 5.40 -26.59 -0.14 -2.46 16 14 C 0.12 2.34 2.85 -27.84 -0.08 2.26 16 15 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 16 C -0.05 -0.91 5.01 -104.62 -0.52 -1.43 16 17 C -0.11 -1.60 9.68 -39.59 -0.38 -1.98 16 18 C -0.12 -1.63 9.83 -39.55 -0.39 -2.02 16 19 C -0.04 -0.62 6.32 -39.50 -0.25 -0.87 16 20 Cl -0.09 -1.13 28.96 -51.86 -1.50 -2.64 16 21 C -0.12 -1.78 9.83 -39.55 -0.39 -2.16 16 22 C -0.07 -1.29 9.35 -39.59 -0.37 -1.66 16 23 O -0.35 -8.54 8.58 -35.23 -0.30 -8.84 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.14 2.60 7.63 -52.49 -0.40 2.20 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -28.96 300.49 -9.47 -38.43 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.59 Total: -0.43 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -3.30 Total: -22.87 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.71 Total: -24.22 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.30 Total: -8.84 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.96 -9.47 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.493 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds