Wall clock time and date at job start Mon Mar 30 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47050 * 269.99799 * 3 2 1 5 5 H 1.48500 * 109.47099 * 30.00002 * 3 2 1 6 6 H 1.48497 * 109.47154 * 150.00071 * 3 2 1 7 7 C 1.37874 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.48262 * 60.01943 * 9 7 2 11 11 C 1.53093 * 109.49060 * 180.02562 * 9 7 2 12 12 C 1.53182 * 109.16415 * 177.59646 * 11 9 7 13 13 C 1.53175 * 109.04230 * 303.02444 * 12 11 9 14 14 C 1.53094 * 109.16587 * 56.96327 * 13 12 11 15 15 H 1.08997 * 109.47978 * 62.39813 * 14 13 12 16 16 C 1.50696 * 109.47984 * 182.42018 * 14 13 12 17 17 C 1.38246 * 119.98618 * 264.97730 * 16 14 13 18 18 C 1.38216 * 120.01497 * 180.02562 * 17 16 14 19 19 C 1.38357 * 119.98603 * 359.97165 * 18 17 16 20 20 Cl 1.73599 * 120.01134 * 180.02562 * 19 18 17 21 21 C 1.38347 * 119.97107 * 0.28224 * 19 18 17 22 22 C 1.38217 * 119.98914 * 359.48757 * 21 19 18 23 23 O 1.42899 * 109.42463 * 302.40815 * 14 13 12 24 24 H 0.96994 * 120.00038 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.51976 * 297.49806 * 11 9 7 26 26 H 1.08995 * 109.52243 * 57.62358 * 11 9 7 27 27 H 1.08998 * 109.54482 * 62.88320 * 12 11 9 28 28 H 1.08998 * 109.54093 * 183.06391 * 12 11 9 29 29 H 1.09001 * 109.51313 * 297.06169 * 13 12 11 30 30 H 1.09003 * 109.53224 * 176.87557 * 13 12 11 31 31 H 1.08003 * 119.99321 * 359.97438 * 17 16 14 32 32 H 1.08003 * 120.00776 * 179.97438 * 18 17 16 33 33 H 1.08000 * 120.00661 * 179.71600 * 21 19 18 34 34 H 1.07996 * 119.99353 * 180.23044 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6251 -2.5574 -0.8898 11 6 2.2457 -3.6630 0.0018 12 6 1.4732 -4.9844 0.0625 13 6 0.5780 -4.9833 1.3054 14 6 -0.3519 -3.7683 1.2540 15 1 -0.9995 -3.8429 0.3804 16 6 -1.1949 -3.7274 2.5024 17 6 -2.4613 -4.2818 2.4995 18 6 -3.2351 -4.2442 3.6441 19 6 -2.7419 -3.6519 4.7931 20 17 -3.7130 -3.6049 6.2313 21 6 -1.4765 -3.0926 4.7939 22 6 -0.7018 -3.1350 3.6501 23 8 0.4296 -2.5750 1.1673 24 1 -0.4850 0.8400 -0.0004 25 1 2.8436 -3.6322 -0.9090 26 1 2.8999 -3.5822 0.8699 27 1 0.8569 -5.0878 -0.8305 28 1 2.1763 -5.8154 0.1186 29 1 1.1978 -4.9300 2.2005 30 1 -0.0168 -5.8965 1.3269 31 1 -2.8463 -4.7438 1.6025 32 1 -4.2246 -4.6770 3.6416 33 1 -1.0928 -2.6260 5.6891 34 1 0.2874 -2.7017 3.6516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393760674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:58 Heat of formation + Delta-G solvation = -59.544233 kcal Electronic energy + Delta-G solvation = -17937.529118 eV Core-core repulsion = 15052.712293 eV Total energy + Delta-G solvation = -2884.816825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76004 -39.29995 -37.39895 -34.98902 -34.12891 -33.10907 -31.98625 -30.35768 -27.49479 -25.30345 -23.90021 -23.58566 -22.07752 -20.81502 -18.74427 -18.06338 -17.01820 -16.78162 -16.28460 -16.05776 -15.51271 -15.24911 -14.98776 -14.63445 -14.37702 -14.34031 -14.02378 -13.48439 -12.91952 -12.85901 -12.60057 -12.52762 -12.44805 -12.32104 -12.08197 -11.79833 -11.77221 -11.68079 -11.29342 -10.86718 -10.55414 -9.96612 -9.85466 -9.39456 -8.14329 -6.34316 0.17358 0.37168 1.14316 1.40655 1.42227 1.52598 2.40694 2.65369 3.02716 3.50823 3.86591 3.97902 3.99398 4.12536 4.15345 4.33133 4.43382 4.48042 4.54351 4.59721 4.75603 4.87397 4.97026 5.05957 5.08933 5.17008 5.22648 5.25508 5.30358 5.35701 5.54677 5.71441 5.79249 5.85612 6.22573 6.68311 7.21031 7.42063 8.93008 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.005652 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.983342 B = 4953.028987 C = 5962.743866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.217 3.783 10 H -0.020 1.020 11 C -0.137 4.137 12 C -0.115 4.115 13 C -0.130 4.130 14 C 0.113 3.887 15 H 0.041 0.959 16 C -0.074 4.074 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.045 4.045 20 Cl -0.069 7.069 21 C -0.117 4.117 22 C -0.094 4.094 23 O -0.377 6.377 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -10.646 7.118 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.082 0.918 9 C 0.161 3.839 10 H -0.002 1.002 11 C -0.175 4.175 12 C -0.152 4.152 13 C -0.168 4.168 14 C 0.055 3.945 15 H 0.059 0.941 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.072 4.072 20 Cl -0.040 7.040 21 C -0.135 4.135 22 C -0.112 4.112 23 O -0.297 6.297 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.091 -10.398 7.384 13.732 hybrid contribution 0.334 1.056 -0.217 1.128 sum -4.757 -9.342 7.167 12.700 Atomic orbital electron populations 1.70168 1.07561 1.27260 1.48207 1.25887 0.95560 1.02809 0.93258 0.85589 0.78771 0.78921 0.78525 1.19476 1.21027 1.18999 1.21430 0.93043 0.91313 1.53006 0.91780 1.19567 0.87403 0.93256 0.83689 1.00228 1.22118 0.98778 0.95524 1.01120 1.21604 0.98692 0.97295 0.97636 1.22085 0.98227 0.97695 0.98780 1.20847 0.92120 0.87936 0.93620 0.94087 1.19999 0.95128 0.97644 0.94629 1.21138 0.92391 0.99638 0.99078 1.21212 1.01155 0.99605 0.90695 1.20991 0.93222 1.03739 0.89233 1.98344 1.70594 1.97434 1.37599 1.21164 0.93047 1.00099 0.99201 1.20975 1.00384 0.97719 0.92134 1.88262 1.58367 1.37604 1.45435 0.93083 0.91942 0.92950 0.92210 0.89698 0.91950 0.89318 0.83267 0.82407 0.83949 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.78 12.84 21.45 0.28 -53.50 16 2 C 0.03 1.57 5.40 84.65 0.46 2.02 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.12 8.79 25.60 0.23 -30.89 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.22 11.20 2.50 29.88 0.07 11.27 16 10 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 11 C -0.14 -5.62 5.36 30.69 0.16 -5.46 16 12 C -0.11 -3.70 6.03 30.71 0.19 -3.52 16 13 C -0.13 -4.19 5.40 30.68 0.17 -4.02 16 14 C 0.11 4.49 2.85 29.88 0.09 4.58 16 15 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 16 C -0.07 -2.62 5.01 -19.86 -0.10 -2.71 16 17 C -0.10 -2.99 9.68 22.27 0.22 -2.77 16 18 C -0.11 -2.75 9.83 22.29 0.22 -2.53 16 19 C -0.05 -1.23 6.32 22.32 0.14 -1.09 16 20 Cl -0.07 -1.60 28.96 -2.72 -0.08 -1.68 16 21 C -0.12 -3.51 9.83 22.29 0.22 -3.29 16 22 C -0.09 -3.35 9.35 22.27 0.21 -3.14 16 23 O -0.38 -19.21 8.58 -148.98 -1.28 -20.49 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.12 4.62 7.63 -2.91 -0.02 4.60 16 Total: -1.00 -64.13 300.49 4.29 -59.85 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.08 Total: 11.32 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 2.26 Total: -41.56 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.28 Total: -53.50 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.28 Total: -20.49 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -64.13 4.29 -59.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.301 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds