Wall clock time and date at job start Mon Mar 30 2020 07:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47009 * 2 1 4 4 H 1.09005 * 109.46909 * 305.59059 * 3 2 1 5 5 C 1.50696 * 109.47226 * 65.59002 * 3 2 1 6 6 H 1.08007 * 119.99845 * 35.16073 * 5 3 2 7 7 C 1.37869 * 120.00460 * 215.15686 * 5 3 2 8 8 N 1.31523 * 119.99627 * 354.68347 * 7 5 3 9 9 Si 1.86794 * 120.00480 * 174.68216 * 7 5 3 10 10 H 1.48502 * 109.47481 * 90.00007 * 9 7 5 11 11 H 1.48498 * 109.47327 * 210.00168 * 9 7 5 12 12 H 1.48508 * 109.47096 * 330.00226 * 9 7 5 13 13 C 1.50696 * 109.46828 * 185.59521 * 3 2 1 14 14 O 1.21256 * 119.99987 * 269.99860 * 13 3 2 15 15 C 1.47165 * 120.00307 * 89.99989 * 13 3 2 16 16 C 1.39873 * 120.16482 * 179.72004 * 15 13 3 17 17 C 1.37877 * 119.84959 * 179.74415 * 16 15 13 18 18 C 1.50700 * 119.90455 * 180.27428 * 17 16 15 19 19 C 1.38402 * 120.18491 * 0.53807 * 17 16 15 20 20 C 1.38487 * 120.34070 * 359.73586 * 19 17 16 21 21 Cl 1.73597 * 119.92994 * 180.02562 * 20 19 17 22 22 C 1.38030 * 120.14151 * 359.97438 * 20 19 17 23 23 H 1.08998 * 109.47126 * 174.78031 * 1 2 3 24 24 H 1.09000 * 109.47307 * 294.78387 * 1 2 3 25 25 H 1.09003 * 109.46870 * 54.78123 * 1 2 3 26 26 H 1.09001 * 109.46975 * 119.99826 * 2 1 3 27 27 H 1.08997 * 109.46908 * 239.99841 * 2 1 3 28 28 H 0.97001 * 119.99688 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.07779 * 359.97438 * 16 15 13 30 30 H 1.09006 * 109.47178 * 270.25857 * 18 17 16 31 31 H 1.09001 * 109.47106 * 30.26162 * 18 17 16 32 32 H 1.09002 * 109.46849 * 150.26347 * 18 17 16 33 33 H 1.08003 * 119.82982 * 179.76592 * 19 17 16 34 34 H 1.08008 * 120.09552 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 1.6539 2.1119 1.2938 6 1 1.6383 1.5436 2.2121 7 6 1.3205 3.4496 1.3053 8 7 1.4398 4.1665 0.2090 9 14 0.6994 4.2441 2.8776 10 1 1.8495 4.7792 3.6497 11 1 -0.2283 5.3530 2.5389 12 1 -0.0168 3.2315 3.6944 13 6 3.5406 1.4448 -0.1385 14 8 4.2408 1.4116 0.8508 15 6 4.1562 1.4873 -1.4745 16 6 5.5486 1.4954 -1.6069 17 6 6.1185 1.5299 -2.8619 18 6 7.6186 1.5324 -3.0060 19 6 5.3168 1.5678 -3.9894 20 6 3.9373 1.5658 -3.8673 21 17 2.9419 1.6129 -5.2887 22 6 3.3522 1.5255 -2.6178 23 1 -0.3633 -1.0234 -0.0935 24 1 -0.3634 0.4308 0.9330 25 1 -0.3633 0.5927 -0.8396 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.2049 5.1076 0.2170 29 1 6.1760 1.4708 -0.7281 30 1 7.9818 2.5602 -3.0074 31 1 8.0647 0.9905 -2.1721 32 1 7.8943 1.0484 -3.9430 33 1 5.7693 1.5986 -4.9696 34 1 2.2762 1.5244 -2.5234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395108541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:32 Heat of formation + Delta-G solvation = -43.770925 kcal Electronic energy + Delta-G solvation = -17785.516056 eV Core-core repulsion = 14901.383213 eV Total energy + Delta-G solvation = -2884.132843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.55992 -37.73041 -36.26321 -34.38524 -32.65495 -31.83959 -30.58351 -27.73901 -26.73169 -24.67853 -23.03036 -21.58727 -20.57518 -18.53754 -16.87327 -16.33258 -15.41701 -15.23750 -14.60758 -14.38789 -14.00810 -13.53966 -13.46066 -13.25395 -12.99938 -12.65013 -12.32614 -12.22997 -11.60141 -11.52479 -11.22085 -11.10553 -10.99619 -10.91039 -10.85952 -10.77371 -10.43646 -10.19147 -9.31708 -9.15032 -8.82060 -8.56948 -8.43578 -8.20515 -6.12561 -4.13501 1.08754 1.43535 2.29028 3.18515 3.30308 3.36332 3.39927 4.18154 4.39602 4.78017 4.85259 5.16278 5.23183 5.41242 5.44066 5.57743 5.61202 5.76678 5.92883 6.00125 6.03619 6.15738 6.24575 6.37071 6.53968 6.58441 6.65739 6.82925 6.90733 6.99168 7.09286 7.22342 7.45065 7.83721 8.19432 8.78156 8.92668 9.50497 10.97444 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.006242 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.389401 B = 4484.531862 C = 4935.258679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.003 4.003 4 H 0.081 0.919 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.401 3.599 14 O -0.461 6.461 15 C -0.130 4.130 16 C -0.072 4.072 17 C -0.095 4.095 18 C -0.109 4.109 19 C -0.099 4.099 20 C -0.045 4.045 21 Cl -0.077 7.077 22 C -0.061 4.061 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -5.518 -9.670 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C -0.022 4.022 4 H 0.099 0.901 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.278 3.722 14 O -0.335 6.335 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.166 4.166 19 C -0.118 4.118 20 C -0.071 4.071 21 Cl -0.048 7.048 22 C -0.080 4.080 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.111 -5.342 -9.338 12.373 hybrid contribution -0.379 0.773 0.481 0.986 sum 5.732 -4.568 -8.858 11.497 Atomic orbital electron populations 1.21578 0.95840 0.98850 1.02674 1.21402 0.96253 0.97075 0.99385 1.19418 0.88084 0.93495 1.01243 0.90079 1.20800 1.44826 0.94446 0.93060 0.92075 1.25018 0.95068 0.97324 0.96481 1.69916 1.47902 1.07803 1.27278 0.86519 0.78755 0.78988 0.83388 1.20617 1.21150 1.19626 1.23831 0.94295 0.69140 0.84959 1.90327 1.66146 1.36504 1.40559 1.21280 0.93609 1.01272 0.96962 1.21467 0.94565 0.95874 0.97154 1.19749 0.96146 1.01219 0.92409 1.20757 0.90721 1.02502 1.02632 1.20965 0.91267 1.00600 0.98986 1.20792 0.91405 1.06978 0.87920 1.98348 1.69987 1.97071 1.39425 1.21505 1.01485 0.95483 0.89481 0.94853 0.91770 0.93354 0.93064 0.94536 0.92675 0.84841 0.91052 0.91273 0.91546 0.85265 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.65 37.16 0.36 -2.09 16 2 C -0.10 -2.09 5.37 -26.73 -0.14 -2.23 16 3 C 0.00 -0.08 1.63 -92.92 -0.15 -0.23 16 4 H 0.08 2.02 5.71 -51.93 -0.30 1.72 16 5 C -0.49 -13.30 6.85 -34.44 -0.24 -13.54 16 6 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 7 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 8 N -0.89 -25.09 12.84 55.43 0.71 -24.38 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.40 9.45 6.17 -30.69 -0.19 9.26 16 14 O -0.46 -11.96 16.35 5.58 0.09 -11.86 16 15 C -0.13 -2.59 5.87 -105.07 -0.62 -3.21 16 16 C -0.07 -1.26 9.25 -39.10 -0.36 -1.62 16 17 C -0.09 -1.35 5.87 -104.69 -0.61 -1.97 16 18 C -0.11 -1.14 10.00 36.01 0.36 -0.78 16 19 C -0.10 -1.39 9.47 -39.43 -0.37 -1.76 16 20 C -0.04 -0.70 6.31 -39.57 -0.25 -0.95 16 21 Cl -0.08 -1.08 28.95 -51.86 -1.50 -2.59 16 22 C -0.06 -1.10 9.14 -39.07 -0.36 -1.46 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.27 7.57 -51.93 -0.39 0.88 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.13 2.29 7.65 -52.49 -0.40 1.89 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.15 2.69 6.36 -52.48 -0.33 2.36 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -29.27 308.38 -8.09 -37.36 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.35 Total: -0.61 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.67 Total: -18.94 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.71 Total: -24.38 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.27 -8.09 -37.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395108541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.414 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds