Wall clock time and date at job start Mon Mar 30 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47009 * 2 1 4 4 H 1.09005 * 109.46909 * 305.59059 * 3 2 1 5 5 C 1.50696 * 109.47226 * 65.59002 * 3 2 1 6 6 H 1.08007 * 119.99845 * 35.16073 * 5 3 2 7 7 C 1.37869 * 120.00460 * 215.15686 * 5 3 2 8 8 N 1.31523 * 119.99627 * 354.68347 * 7 5 3 9 9 Si 1.86794 * 120.00480 * 174.68216 * 7 5 3 10 10 H 1.48502 * 109.47481 * 90.00007 * 9 7 5 11 11 H 1.48498 * 109.47327 * 210.00168 * 9 7 5 12 12 H 1.48508 * 109.47096 * 330.00226 * 9 7 5 13 13 C 1.50696 * 109.46828 * 185.59521 * 3 2 1 14 14 O 1.21256 * 119.99987 * 269.99860 * 13 3 2 15 15 C 1.47165 * 120.00307 * 89.99989 * 13 3 2 16 16 C 1.39873 * 120.16482 * 179.72004 * 15 13 3 17 17 C 1.37877 * 119.84959 * 179.74415 * 16 15 13 18 18 C 1.50700 * 119.90455 * 180.27428 * 17 16 15 19 19 C 1.38402 * 120.18491 * 0.53807 * 17 16 15 20 20 C 1.38487 * 120.34070 * 359.73586 * 19 17 16 21 21 Cl 1.73597 * 119.92994 * 180.02562 * 20 19 17 22 22 C 1.38030 * 120.14151 * 359.97438 * 20 19 17 23 23 H 1.08998 * 109.47126 * 174.78031 * 1 2 3 24 24 H 1.09000 * 109.47307 * 294.78387 * 1 2 3 25 25 H 1.09003 * 109.46870 * 54.78123 * 1 2 3 26 26 H 1.09001 * 109.46975 * 119.99826 * 2 1 3 27 27 H 1.08997 * 109.46908 * 239.99841 * 2 1 3 28 28 H 0.97001 * 119.99688 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.07779 * 359.97438 * 16 15 13 30 30 H 1.09006 * 109.47178 * 270.25857 * 18 17 16 31 31 H 1.09001 * 109.47106 * 30.26162 * 18 17 16 32 32 H 1.09002 * 109.46849 * 150.26347 * 18 17 16 33 33 H 1.08003 * 119.82982 * 179.76592 * 19 17 16 34 34 H 1.08008 * 120.09552 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 1.6539 2.1119 1.2938 6 1 1.6383 1.5436 2.2121 7 6 1.3205 3.4496 1.3053 8 7 1.4398 4.1665 0.2090 9 14 0.6994 4.2441 2.8776 10 1 1.8495 4.7792 3.6497 11 1 -0.2283 5.3530 2.5389 12 1 -0.0168 3.2315 3.6944 13 6 3.5406 1.4448 -0.1385 14 8 4.2408 1.4116 0.8508 15 6 4.1562 1.4873 -1.4745 16 6 5.5486 1.4954 -1.6069 17 6 6.1185 1.5299 -2.8619 18 6 7.6186 1.5324 -3.0060 19 6 5.3168 1.5678 -3.9894 20 6 3.9373 1.5658 -3.8673 21 17 2.9419 1.6129 -5.2887 22 6 3.3522 1.5255 -2.6178 23 1 -0.3633 -1.0234 -0.0935 24 1 -0.3634 0.4308 0.9330 25 1 -0.3633 0.5927 -0.8396 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.2049 5.1076 0.2170 29 1 6.1760 1.4708 -0.7281 30 1 7.9818 2.5602 -3.0074 31 1 8.0647 0.9905 -2.1721 32 1 7.8943 1.0484 -3.9430 33 1 5.7693 1.5986 -4.9696 34 1 2.2762 1.5244 -2.5234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395108541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:29 Heat of formation + Delta-G solvation = -58.294183 kcal Electronic energy + Delta-G solvation = -17786.145831 eV Core-core repulsion = 14901.383213 eV Total energy + Delta-G solvation = -2884.762619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.04085 -39.33789 -37.45660 -36.22917 -34.06249 -33.61188 -31.91627 -29.41781 -27.91696 -26.51990 -24.58697 -22.85016 -22.20765 -20.20665 -18.69169 -17.90717 -16.90991 -16.62936 -16.47543 -15.85885 -15.45562 -15.22734 -15.07998 -14.71139 -14.22745 -14.12559 -13.66172 -13.34837 -13.23293 -12.93162 -12.86553 -12.69673 -12.65517 -12.39017 -12.27665 -12.15509 -11.96976 -11.91089 -11.18103 -11.07436 -10.84747 -10.08117 -9.88254 -9.67937 -8.21241 -6.27009 -0.31064 0.15618 1.07210 1.37180 1.39416 1.49170 1.63513 2.39710 2.70905 3.04286 3.46193 3.72084 3.99311 4.13434 4.26508 4.31035 4.40191 4.43972 4.59322 4.71183 4.80836 4.84997 4.95790 5.08515 5.13259 5.15929 5.22447 5.28249 5.35955 5.48480 5.54388 5.66231 5.71678 5.74209 6.19811 6.81771 6.96908 7.38701 8.88158 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.006242 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.389401 B = 4484.531862 C = 4935.258679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C -0.008 4.008 4 H 0.068 0.932 5 C -0.506 4.506 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.264 1.264 13 C 0.397 3.603 14 O -0.501 6.501 15 C -0.161 4.161 16 C -0.083 4.083 17 C -0.084 4.084 18 C -0.109 4.109 19 C -0.083 4.083 20 C -0.047 4.047 21 Cl -0.060 7.060 22 C -0.071 4.071 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 -5.969 -11.611 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C -0.027 4.027 4 H 0.086 0.914 5 C -0.544 4.544 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.188 1.188 13 C 0.278 3.722 14 O -0.379 6.379 15 C -0.163 4.163 16 C -0.101 4.101 17 C -0.084 4.084 18 C -0.165 4.165 19 C -0.101 4.101 20 C -0.074 4.074 21 Cl -0.031 7.031 22 C -0.090 4.090 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.186 0.814 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.060 -5.806 -11.294 14.529 hybrid contribution -0.632 0.870 0.967 1.446 sum 6.428 -4.935 -10.327 13.127 Atomic orbital electron populations 1.21521 0.94404 1.00850 1.01571 1.21362 0.97501 0.94848 0.99995 1.19429 0.88836 0.95230 0.99253 0.91439 1.21031 1.44738 0.94817 0.93793 0.93495 1.25698 0.95512 0.97856 0.99203 1.70009 1.48997 1.07912 1.28757 0.85674 0.78177 0.78419 0.80192 1.21119 1.20154 1.18793 1.23932 0.94165 0.67760 0.86374 1.90289 1.66647 1.38895 1.42107 1.20923 0.95019 1.04975 0.95343 1.21560 0.93426 0.96434 0.98700 1.20158 0.98462 0.98843 0.90947 1.20872 0.87440 1.03743 1.04433 1.21431 0.90338 0.97774 1.00596 1.20880 0.92502 1.06401 0.87609 1.98355 1.69801 1.96954 1.37961 1.21386 1.00839 0.96555 0.90255 0.91402 0.93677 0.93460 0.93902 0.92315 0.92711 0.85419 0.89818 0.90734 0.88707 0.81413 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.65 71.98 0.69 -3.95 16 2 C -0.10 -4.08 5.37 30.60 0.16 -3.91 16 3 C -0.01 -0.41 1.63 -12.29 -0.02 -0.43 16 4 H 0.07 3.51 5.71 -2.38 -0.01 3.50 16 5 C -0.51 -28.24 6.85 25.60 0.18 -28.07 16 6 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 7 C 0.02 0.94 5.45 84.65 0.46 1.40 16 8 N -0.92 -53.01 12.84 21.45 0.28 -52.74 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.40 19.52 6.17 28.03 0.17 19.70 16 14 O -0.50 -27.29 16.35 -2.96 -0.05 -27.34 16 15 C -0.16 -6.56 5.87 -20.16 -0.12 -6.68 16 16 C -0.08 -2.86 9.25 22.58 0.21 -2.65 16 17 C -0.08 -2.17 5.87 -19.91 -0.12 -2.28 16 18 C -0.11 -1.84 10.00 71.24 0.71 -1.13 16 19 C -0.08 -2.03 9.47 22.37 0.21 -1.82 16 20 C -0.05 -1.40 6.31 22.28 0.14 -1.26 16 21 Cl -0.06 -1.54 28.95 -2.72 -0.08 -1.62 16 22 C -0.07 -2.60 9.14 22.60 0.21 -2.39 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.80 7.57 -2.39 -0.02 1.79 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.13 4.46 7.65 -2.91 -0.02 4.44 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.13 5.09 6.36 -2.91 -0.02 5.07 16 Total: -1.00 -65.29 308.38 6.16 -59.13 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.10 Total: 9.33 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 2.89 Total: -33.49 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.28 Total: -52.74 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -65.29 6.16 -59.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395108541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.831 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds