Wall clock time and date at job start Mon Mar 30 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 119.98874 * 2 1 4 4 C 1.38335 * 119.98532 * 179.97438 * 3 2 1 5 5 Cl 1.73606 * 120.01341 * 179.97438 * 4 3 2 6 6 C 1.38369 * 119.97449 * 359.97438 * 4 3 2 7 7 C 1.38198 * 119.98340 * 0.02562 * 6 4 3 8 8 C 1.50707 * 119.99081 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.81965 * 159.10758 * 8 7 6 10 10 C 1.54374 * 109.83032 * 279.99527 * 8 7 6 11 11 C 1.55303 * 102.25158 * 140.86928 * 10 8 7 12 12 C 1.54938 * 100.94502 * 325.86860 * 11 10 8 13 13 H 1.09001 * 110.30747 * 277.43025 * 12 11 10 14 14 C 1.50699 * 110.31315 * 155.35920 * 12 11 10 15 15 H 1.08007 * 119.99628 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00363 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99558 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00217 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47297 * 119.99958 * 18 16 14 21 21 H 1.48506 * 109.47117 * 240.00074 * 18 16 14 22 22 O 1.43240 * 109.83093 * 38.13282 * 8 7 6 23 23 C 1.38215 * 119.99588 * 179.72675 * 2 1 3 24 24 H 1.08999 * 109.47015 * 90.00122 * 1 2 3 25 25 H 1.09000 * 109.46646 * 209.99275 * 1 2 3 26 26 H 1.09000 * 109.47248 * 329.99992 * 1 2 3 27 27 H 1.08008 * 120.01188 * 359.97438 * 3 2 1 28 28 H 1.07993 * 120.00892 * 179.97438 * 6 4 3 29 29 H 1.08997 * 110.85255 * 259.06455 * 10 8 7 30 30 H 1.09004 * 110.84597 * 22.68078 * 10 8 7 31 31 H 1.09007 * 111.12310 * 83.78741 * 11 10 8 32 32 H 1.09003 * 111.12572 * 207.90171 * 11 10 8 33 33 H 0.97002 * 119.99705 * 180.02562 * 17 16 14 34 34 H 1.08002 * 119.98530 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 0.0005 5 17 4.4498 2.7004 -0.0001 6 6 4.2726 -0.0015 0.0016 7 6 3.5806 -1.1978 0.0016 8 6 4.3333 -2.5034 0.0022 9 1 3.6878 -3.3020 0.3678 10 6 4.8138 -2.8315 -1.4277 11 6 6.2264 -3.4244 -1.1728 12 6 6.6810 -2.5867 0.0488 13 1 7.0794 -1.6263 -0.2783 14 6 7.7177 -3.3392 0.8425 15 1 8.0345 -4.3211 0.5231 16 6 8.2619 -2.7741 1.9764 17 7 7.8757 -1.5787 2.3655 18 14 9.5465 -3.7071 2.9606 19 1 9.8043 -5.0209 2.3181 20 1 10.8054 -2.9206 3.0026 21 1 9.0505 -3.9219 4.3438 22 8 5.4940 -2.3948 0.8347 23 6 2.1980 -1.1970 0.0057 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6580 2.1326 -0.0004 28 1 5.3525 -0.0022 0.0016 29 1 4.1623 -3.5691 -1.8963 30 1 4.8761 -1.9272 -2.0331 31 1 6.1686 -4.4839 -0.9230 32 1 6.8816 -3.2603 -2.0283 33 1 8.2588 -1.1810 3.1630 34 1 1.6577 -2.1321 0.0106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395165083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:38 Heat of formation + Delta-G solvation = -43.222394 kcal Electronic energy + Delta-G solvation = -17841.800904 eV Core-core repulsion = 14957.691847 eV Total energy + Delta-G solvation = -2884.109057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.58291 -37.80615 -36.18657 -33.07436 -32.26870 -31.19085 -30.77986 -27.94612 -26.80901 -24.73041 -22.27952 -21.65128 -20.37587 -19.66592 -16.76527 -16.36958 -15.82716 -15.25652 -14.76519 -14.60756 -14.05868 -13.90019 -13.45259 -12.99671 -12.68304 -12.43917 -12.38018 -12.13581 -11.78476 -11.66069 -11.14802 -11.13804 -10.91734 -10.73263 -10.59712 -10.41202 -10.37917 -10.21195 -9.81251 -9.14242 -8.61017 -8.42730 -8.34421 -7.93700 -6.01958 -4.15193 1.44150 1.55441 2.42081 3.29986 3.38123 3.41292 3.85453 4.41875 4.83856 4.91957 5.10292 5.24797 5.36975 5.42655 5.49794 5.50118 5.56993 5.67009 5.71954 5.82752 5.99513 6.08510 6.18054 6.24717 6.43091 6.54696 6.57198 6.61025 6.69362 6.77928 6.99878 7.12315 7.54445 7.87905 8.23333 8.58571 8.99702 9.56093 11.05386 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.005798 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.915313 B = 4828.363178 C = 5528.166622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.031 4.031 5 Cl -0.079 7.079 6 C -0.083 4.083 7 C -0.063 4.063 8 C 0.109 3.891 9 H 0.071 0.929 10 C -0.146 4.146 11 C -0.147 4.147 12 C 0.208 3.792 13 H 0.029 0.971 14 C -0.534 4.534 15 H 0.063 0.937 16 C 0.078 3.922 17 N -0.861 5.861 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 O -0.348 6.348 23 C -0.115 4.115 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 3.658 -6.489 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.058 4.058 5 Cl -0.051 7.051 6 C -0.101 4.101 7 C -0.064 4.064 8 C 0.049 3.951 9 H 0.089 0.911 10 C -0.184 4.184 11 C -0.185 4.185 12 C 0.153 3.847 13 H 0.047 0.953 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.128 4.128 17 N -0.497 5.497 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 O -0.267 6.267 23 C -0.134 4.134 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.193 3.982 -6.137 14.219 hybrid contribution 0.743 -0.251 0.447 0.903 sum -11.450 3.732 -5.690 13.319 Atomic orbital electron populations 1.20736 0.90930 1.02715 1.02137 1.19699 0.95885 0.92427 1.00518 1.20773 0.91853 0.98241 1.03395 1.20898 0.92156 0.87065 1.05639 1.98348 1.77087 1.32597 1.97026 1.21062 1.01666 0.89724 0.97680 1.20490 0.93334 0.96023 0.96556 1.21464 0.90847 0.91172 0.91574 0.91142 1.23123 0.98220 1.00672 0.96365 1.23348 0.94043 1.00873 1.00230 1.20581 0.83581 0.93780 0.86713 0.95296 1.21132 1.20726 1.03827 1.11494 0.91848 1.25080 0.95968 0.94652 0.97107 1.70033 1.41263 1.14667 1.23735 0.86569 0.81258 0.80138 0.80179 1.19635 1.20893 1.20847 1.88924 1.12483 1.92440 1.32878 1.20933 0.93522 0.97557 1.01351 0.91309 0.91454 0.91664 0.85660 0.84033 0.91539 0.91516 0.91456 0.91786 0.92903 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.08 -1.15 5.88 -104.63 -0.62 -1.76 16 3 C -0.12 -1.78 9.49 -39.55 -0.38 -2.16 16 4 C -0.03 -0.52 6.32 -39.50 -0.25 -0.77 16 5 Cl -0.08 -1.26 28.96 -51.86 -1.50 -2.76 16 6 C -0.08 -1.58 9.13 -39.55 -0.36 -1.94 16 7 C -0.06 -1.15 4.85 -104.63 -0.51 -1.65 16 8 C 0.11 2.14 3.74 -27.16 -0.10 2.03 16 9 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 10 C -0.15 -2.54 6.53 -24.79 -0.16 -2.70 16 11 C -0.15 -2.97 6.53 -24.49 -0.16 -3.13 16 12 C 0.21 5.27 3.22 -26.86 -0.09 5.18 16 13 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 14 C -0.53 -14.86 8.79 -34.44 -0.30 -15.16 16 15 H 0.06 1.71 7.76 -52.48 -0.41 1.31 16 16 C 0.08 2.20 5.43 -17.82 -0.10 2.11 16 17 N -0.86 -25.50 13.05 55.43 0.72 -24.78 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 O -0.35 -8.84 9.66 -35.23 -0.34 -9.19 16 23 C -0.12 -1.73 9.33 -39.58 -0.37 -2.10 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 28 H 0.14 3.08 7.69 -52.49 -0.40 2.68 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 31 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 1.56 8.05 -52.49 -0.42 1.14 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -30.13 304.21 -9.14 -39.27 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.56 Total: -0.72 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.03 Total: -22.74 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.72 Total: -24.78 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.34 Total: -9.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.13 -9.14 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.948 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds