Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38242 * 119.99290 * 2 1 4 4 C 1.38329 * 119.98970 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.01744 * 180.02562 * 4 3 2 6 6 C 1.38374 * 119.97405 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.98631 * 0.02562 * 6 4 3 8 8 C 1.50692 * 119.99699 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.55390 * 207.88135 * 8 7 6 10 10 C 1.54992 * 110.62062 * 84.99729 * 8 7 6 11 11 C 1.54808 * 102.09663 * 204.47557 * 10 8 7 12 12 C 1.54103 * 104.18578 * 20.88343 * 11 10 8 13 13 H 1.09002 * 109.87915 * 242.60324 * 12 11 10 14 14 C 1.50698 * 109.87783 * 121.60033 * 12 11 10 15 15 H 1.07999 * 120.00087 * 0.31105 * 14 12 11 16 16 C 1.37883 * 119.99913 * 180.30135 * 14 12 11 17 17 N 1.31512 * 119.99645 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00110 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46824 * 60.00398 * 18 16 14 20 20 H 1.48496 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47287 * 300.00839 * 18 16 14 22 22 O 1.43750 * 107.41924 * 2.10301 * 12 11 10 23 23 C 1.38217 * 119.99679 * 180.25857 * 2 1 3 24 24 H 1.09001 * 109.47366 * 89.99916 * 1 2 3 25 25 H 1.08998 * 109.46947 * 209.99673 * 1 2 3 26 26 H 1.09000 * 109.47317 * 329.99842 * 1 2 3 27 27 H 1.07999 * 120.00729 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01286 * 180.02562 * 6 4 3 29 29 H 1.09007 * 110.90687 * 86.27698 * 10 8 7 30 30 H 1.09004 * 110.94169 * 322.69167 * 10 8 7 31 31 H 1.08992 * 110.49201 * 262.20655 * 11 10 8 32 32 H 1.09007 * 110.48703 * 139.55607 * 11 10 8 33 33 H 0.97004 * 119.99535 * 179.97438 * 17 16 14 34 34 H 1.07999 * 119.98947 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0005 5 17 4.4498 2.7003 0.0001 6 6 4.2726 -0.0015 -0.0005 7 6 3.5807 -1.1978 -0.0005 8 6 4.3332 -2.5034 -0.0011 9 1 3.7425 -3.2853 -0.4783 10 6 4.7160 -2.9134 1.4437 11 6 5.9444 -3.8254 1.2075 12 6 6.4500 -3.4230 -0.1915 13 1 6.3792 -4.2732 -0.8699 14 6 7.8798 -2.9548 -0.1045 15 1 8.3883 -2.9465 0.8483 16 6 8.5389 -2.5373 -1.2413 17 7 7.9196 -2.5472 -2.4015 18 14 10.3110 -1.9564 -1.1334 19 1 11.1611 -3.0553 -0.6091 20 1 10.7863 -1.5637 -2.4844 21 1 10.3942 -0.7878 -0.2208 22 8 5.6129 -2.3525 -0.6601 23 6 2.1980 -1.1970 -0.0054 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6580 2.1326 -0.0004 28 1 5.3525 -0.0023 -0.0005 29 1 3.9059 -3.4673 1.9184 30 1 4.9879 -2.0406 2.0374 31 1 5.6487 -4.8744 1.2191 32 1 6.7106 -3.6356 1.9593 33 1 8.3832 -2.2531 -3.2012 34 1 1.6577 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395165084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -42.041236 kcal Electronic energy + Delta-G solvation = -17800.894384 eV Core-core repulsion = 14916.836546 eV Total energy + Delta-G solvation = -2884.057838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53490 -37.79898 -36.23441 -33.12828 -32.28102 -31.20046 -30.75500 -27.90793 -26.82476 -24.67883 -22.35433 -21.82669 -20.03324 -19.78332 -16.98188 -16.29850 -15.73589 -15.17335 -14.89916 -14.34837 -13.94750 -13.86867 -13.67939 -13.01542 -12.81588 -12.59489 -12.34474 -12.31916 -11.72584 -11.56277 -11.21659 -11.13046 -10.89837 -10.75650 -10.63141 -10.43458 -10.27769 -10.05973 -9.82315 -9.19411 -8.58926 -8.43123 -8.38483 -8.00320 -6.00327 -4.13597 1.39074 1.51357 2.37663 3.32859 3.38023 3.39983 3.81511 4.42880 4.72659 4.87950 5.13975 5.21432 5.35669 5.46045 5.47574 5.54628 5.56721 5.68135 5.72172 5.81308 5.94454 6.07155 6.16016 6.30046 6.39194 6.55956 6.59472 6.62924 6.73619 6.76286 6.97727 7.08677 7.53009 7.88287 8.22854 8.49846 8.98635 9.57272 11.06886 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.006244 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.157304 B = 4483.213883 C = 5481.635771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.033 4.033 5 Cl -0.079 7.079 6 C -0.082 4.082 7 C -0.047 4.047 8 C 0.099 3.901 9 H 0.063 0.937 10 C -0.139 4.139 11 C -0.146 4.146 12 C 0.203 3.797 13 H 0.027 0.973 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 O -0.341 6.341 23 C -0.115 4.115 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.262 0.738 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 4.554 5.489 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.059 4.059 5 Cl -0.051 7.051 6 C -0.101 4.101 7 C -0.047 4.047 8 C 0.040 3.960 9 H 0.081 0.919 10 C -0.177 4.177 11 C -0.184 4.184 12 C 0.148 3.852 13 H 0.045 0.955 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.498 5.498 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 O -0.261 6.261 23 C -0.133 4.133 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.959 4.882 5.134 14.769 hybrid contribution 1.031 0.361 0.075 1.095 sum -11.928 5.243 5.209 14.033 Atomic orbital electron populations 1.20736 0.90842 1.02638 1.02322 1.19683 0.95926 0.92335 1.00496 1.20788 0.91853 0.98277 1.03192 1.20912 0.92169 0.87084 1.05738 1.98349 1.77085 1.32598 1.97032 1.21117 1.01982 0.89567 0.97416 1.19849 0.92915 0.94923 0.97045 1.21835 0.89764 0.91560 0.92808 0.91949 1.23056 0.98057 0.99952 0.96618 1.23067 0.96445 0.97600 1.01241 1.20302 0.89936 0.87112 0.87882 0.95525 1.21132 0.94970 1.46896 0.94181 0.91999 1.25075 0.97843 0.94456 0.95397 1.70023 1.36542 1.44659 0.98577 0.86716 0.84940 0.79380 0.77293 1.20108 1.21166 1.20041 1.89402 1.18901 1.52129 1.65639 1.20906 0.93383 0.97686 1.01302 0.91173 0.91458 0.91657 0.85596 0.83571 0.92033 0.91305 0.92984 0.91307 0.92847 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.08 -1.10 5.88 -104.63 -0.62 -1.72 16 3 C -0.12 -1.70 9.49 -39.55 -0.38 -2.08 16 4 C -0.03 -0.53 6.32 -39.50 -0.25 -0.78 16 5 Cl -0.08 -1.23 28.96 -51.86 -1.50 -2.73 16 6 C -0.08 -1.55 9.16 -39.54 -0.36 -1.91 16 7 C -0.05 -0.84 5.09 -104.63 -0.53 -1.37 16 8 C 0.10 1.96 3.56 -26.83 -0.10 1.86 16 9 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 10 C -0.14 -2.49 6.57 -24.73 -0.16 -2.66 16 11 C -0.15 -2.96 6.63 -25.20 -0.17 -3.13 16 12 C 0.20 5.18 3.24 -27.31 -0.09 5.09 16 13 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.53 -14.88 8.78 -34.44 -0.30 -15.18 16 15 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 16 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 17 N -0.86 -25.67 12.93 55.43 0.72 -24.95 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.34 -8.70 9.46 -35.23 -0.33 -9.03 16 23 C -0.11 -1.67 9.37 -39.58 -0.37 -2.05 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.15 3.14 7.50 -52.49 -0.39 2.74 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.40 7.40 -51.92 -0.38 1.01 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -30.15 303.26 -9.14 -39.29 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.51 Total: -1.14 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -3.06 Total: -22.45 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.72 Total: -24.95 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.33 Total: -9.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.15 -9.14 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.754 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds