Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38242 * 119.99290 * 2 1 4 4 C 1.38329 * 119.98970 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.01744 * 180.02562 * 4 3 2 6 6 C 1.38374 * 119.97405 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.98631 * 0.02562 * 6 4 3 8 8 C 1.50692 * 119.99699 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.55390 * 207.88135 * 8 7 6 10 10 C 1.54992 * 110.62062 * 84.99729 * 8 7 6 11 11 C 1.54808 * 102.09663 * 204.47557 * 10 8 7 12 12 C 1.54103 * 104.18578 * 20.88343 * 11 10 8 13 13 H 1.09002 * 109.87915 * 242.60324 * 12 11 10 14 14 C 1.50698 * 109.87783 * 121.60033 * 12 11 10 15 15 H 1.07999 * 120.00087 * 0.31105 * 14 12 11 16 16 C 1.37883 * 119.99913 * 180.30135 * 14 12 11 17 17 N 1.31512 * 119.99645 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00110 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46824 * 60.00398 * 18 16 14 20 20 H 1.48496 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47287 * 300.00839 * 18 16 14 22 22 O 1.43750 * 107.41924 * 2.10301 * 12 11 10 23 23 C 1.38217 * 119.99679 * 180.25857 * 2 1 3 24 24 H 1.09001 * 109.47366 * 89.99916 * 1 2 3 25 25 H 1.08998 * 109.46947 * 209.99673 * 1 2 3 26 26 H 1.09000 * 109.47317 * 329.99842 * 1 2 3 27 27 H 1.07999 * 120.00729 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01286 * 180.02562 * 6 4 3 29 29 H 1.09007 * 110.90687 * 86.27698 * 10 8 7 30 30 H 1.09004 * 110.94169 * 322.69167 * 10 8 7 31 31 H 1.08992 * 110.49201 * 262.20655 * 11 10 8 32 32 H 1.09007 * 110.48703 * 139.55607 * 11 10 8 33 33 H 0.97004 * 119.99535 * 179.97438 * 17 16 14 34 34 H 1.07999 * 119.98947 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 -0.0005 5 17 4.4498 2.7003 0.0001 6 6 4.2726 -0.0015 -0.0005 7 6 3.5807 -1.1978 -0.0005 8 6 4.3332 -2.5034 -0.0011 9 1 3.7425 -3.2853 -0.4783 10 6 4.7160 -2.9134 1.4437 11 6 5.9444 -3.8254 1.2075 12 6 6.4500 -3.4230 -0.1915 13 1 6.3792 -4.2732 -0.8699 14 6 7.8798 -2.9548 -0.1045 15 1 8.3883 -2.9465 0.8483 16 6 8.5389 -2.5373 -1.2413 17 7 7.9196 -2.5472 -2.4015 18 14 10.3110 -1.9564 -1.1334 19 1 11.1611 -3.0553 -0.6091 20 1 10.7863 -1.5637 -2.4844 21 1 10.3942 -0.7878 -0.2208 22 8 5.6129 -2.3525 -0.6601 23 6 2.1980 -1.1970 -0.0054 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6580 2.1326 -0.0004 28 1 5.3525 -0.0023 -0.0005 29 1 3.9059 -3.4673 1.9184 30 1 4.9879 -2.0406 2.0374 31 1 5.6487 -4.8744 1.2191 32 1 6.7106 -3.6356 1.9593 33 1 8.3832 -2.2531 -3.2012 34 1 1.6577 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395165084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = -58.465428 kcal Electronic energy + Delta-G solvation = -17801.606590 eV Core-core repulsion = 14916.836546 eV Total energy + Delta-G solvation = -2884.770044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86326 -39.38752 -37.46746 -34.90232 -33.75415 -32.73288 -32.27735 -29.61667 -27.81455 -26.50612 -23.89105 -23.08557 -21.78126 -21.13797 -18.93083 -17.65467 -17.18223 -16.70045 -16.39276 -16.15479 -15.46442 -15.35447 -14.92222 -14.29653 -14.24674 -14.04370 -13.65256 -13.51129 -13.19500 -12.90431 -12.81651 -12.53352 -12.45799 -12.33699 -12.13671 -12.03214 -11.89784 -11.59690 -11.47810 -11.06518 -10.70735 -10.06330 -9.58581 -9.56620 -8.15967 -6.36099 0.18379 0.29890 1.14290 1.37866 1.41006 1.48169 2.39049 2.59104 3.04730 3.50153 3.75989 3.87630 4.03667 4.12299 4.19322 4.27190 4.39756 4.45979 4.52555 4.68857 4.75726 4.91194 4.92017 4.93682 4.99855 5.12175 5.22368 5.26768 5.31484 5.49208 5.51572 5.65422 5.72615 5.89762 6.17303 6.53165 6.96308 7.39525 8.91706 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.006244 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.157304 B = 4483.213883 C = 5481.635771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.041 4.041 5 Cl -0.079 7.079 6 C -0.113 4.113 7 C -0.065 4.065 8 C 0.091 3.909 9 H 0.074 0.926 10 C -0.125 4.125 11 C -0.139 4.139 12 C 0.195 3.805 13 H -0.007 1.007 14 C -0.554 4.554 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.902 5.902 18 Si 0.956 3.044 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.273 1.273 22 O -0.378 6.378 23 C -0.111 4.111 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.261 0.739 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 4.895 6.697 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.068 4.068 5 Cl -0.050 7.050 6 C -0.132 4.132 7 C -0.066 4.066 8 C 0.033 3.967 9 H 0.091 0.909 10 C -0.163 4.163 11 C -0.176 4.176 12 C 0.139 3.861 13 H 0.010 0.990 14 C -0.591 4.591 15 H 0.082 0.918 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.780 3.220 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.198 1.198 22 O -0.298 6.298 23 C -0.129 4.129 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.172 0.828 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.333 5.217 6.362 17.401 hybrid contribution 1.647 0.267 -0.302 1.696 sum -13.686 5.485 6.060 15.941 Atomic orbital electron populations 1.20846 0.87387 1.04461 1.03645 1.20179 0.98179 0.91182 0.97650 1.21171 0.90660 1.00094 1.01665 1.21008 0.93257 0.86312 1.06190 1.98340 1.77436 1.32209 1.97057 1.20841 1.00122 0.91483 1.00765 1.19791 0.94354 0.93435 0.98985 1.22099 0.87837 0.93303 0.93424 0.90856 1.22995 0.98052 0.99506 0.95706 1.22950 0.97408 0.99505 0.97779 1.20203 0.89723 0.86100 0.90068 0.98954 1.21586 0.96777 1.46451 0.94285 0.91826 1.25930 1.02243 0.94623 0.95030 1.70169 1.38334 1.46193 0.99239 0.85666 0.79861 0.79134 0.77317 1.18579 1.20861 1.19772 1.89312 1.21590 1.51929 1.66999 1.21194 0.91826 0.99725 1.00139 0.89882 0.89767 0.89855 0.82776 0.87853 0.87868 0.92011 0.90603 0.91617 0.93047 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.74 16 2 C -0.07 -1.62 5.88 -19.87 -0.12 -1.73 16 3 C -0.12 -2.97 9.49 22.29 0.21 -2.76 16 4 C -0.04 -1.34 6.32 22.32 0.14 -1.20 16 5 Cl -0.08 -2.45 28.96 -2.72 -0.08 -2.53 16 6 C -0.11 -4.40 9.16 22.29 0.20 -4.20 16 7 C -0.07 -2.31 5.09 -19.87 -0.10 -2.42 16 8 C 0.09 3.62 3.56 30.53 0.11 3.73 16 9 H 0.07 2.68 8.10 -2.39 -0.02 2.66 16 10 C -0.13 -4.35 6.57 31.89 0.21 -4.14 16 11 C -0.14 -5.62 6.63 31.58 0.21 -5.41 16 12 C 0.19 10.33 3.24 30.22 0.10 10.43 16 13 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 14 C -0.55 -31.96 8.78 25.60 0.22 -31.74 16 15 H 0.06 3.53 7.33 -2.91 -0.02 3.50 16 16 C 0.02 1.39 5.41 84.66 0.46 1.85 16 17 N -0.90 -56.08 12.93 21.45 0.28 -55.80 16 18 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 22 O -0.38 -20.20 9.46 -148.98 -1.41 -21.61 16 23 C -0.11 -2.95 9.37 22.27 0.21 -2.74 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 27 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 28 H 0.10 4.83 7.50 -2.91 -0.02 4.81 16 29 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 32 H 0.07 2.67 7.40 -2.38 -0.02 2.65 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -69.36 303.26 4.47 -64.88 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.09 Total: 8.81 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 2.57 Total: -41.05 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.28 Total: -55.80 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.41 Total: -21.61 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.08 Total: -2.53 kcal Total: -69.36 4.47 -64.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.418 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds