Wall clock time and date at job start Mon Mar 30 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99289 * 2 1 4 4 C 1.38340 * 119.98644 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.01293 * 179.97438 * 4 3 2 6 6 C 1.38372 * 119.97177 * 359.97438 * 4 3 2 7 7 C 1.38194 * 119.98569 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99310 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.33249 * 157.74534 * 8 7 6 10 10 C 1.54477 * 110.36871 * 279.99769 * 8 7 6 11 11 C 1.54507 * 104.06510 * 142.80899 * 10 8 7 12 12 C 1.54483 * 104.06211 * 359.97438 * 11 10 8 13 13 H 1.09002 * 110.37322 * 94.85326 * 12 11 10 14 14 C 1.50699 * 110.37332 * 217.08025 * 12 11 10 15 15 H 1.08001 * 120.00025 * 358.44931 * 14 12 11 16 16 C 1.37876 * 119.99873 * 178.44761 * 14 12 11 17 17 N 1.31520 * 119.99788 * 179.97438 * 16 14 12 18 18 Si 1.86796 * 120.00240 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.47246 * 89.99794 * 18 16 14 20 20 H 1.48506 * 109.47119 * 209.99951 * 18 16 14 21 21 H 1.48502 * 109.46700 * 329.99516 * 18 16 14 22 22 O 1.44428 * 104.89902 * 335.96812 * 12 11 10 23 23 C 1.38223 * 119.99366 * 180.27025 * 2 1 3 24 24 H 1.09004 * 109.46802 * 90.00188 * 1 2 3 25 25 H 1.08992 * 109.47340 * 210.00172 * 1 2 3 26 26 H 1.09001 * 109.47071 * 330.00572 * 1 2 3 27 27 H 1.07995 * 120.01079 * 0.03979 * 3 2 1 28 28 H 1.07999 * 120.00508 * 179.97438 * 6 4 3 29 29 H 1.09000 * 110.51486 * 24.16342 * 10 8 7 30 30 H 1.09000 * 110.62726 * 261.50960 * 10 8 7 31 31 H 1.09005 * 110.51421 * 241.35469 * 11 10 8 32 32 H 1.09001 * 110.51335 * 118.64380 * 11 10 8 33 33 H 0.97004 * 119.99841 * 180.02562 * 17 16 14 34 34 H 1.07995 * 119.98598 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5814 1.1971 -0.0005 5 17 4.4499 2.7002 -0.0012 6 6 4.2726 -0.0017 -0.0005 7 6 3.5806 -1.1979 -0.0005 8 6 4.3331 -2.5036 -0.0011 9 1 3.7029 -3.3042 0.3860 10 6 4.8189 -2.8435 -1.4276 11 6 6.2066 -3.4865 -1.2084 12 6 6.3954 -3.4584 0.3246 13 1 6.0830 -4.4063 0.7629 14 6 7.8335 -3.1701 0.6709 15 1 8.5633 -3.0434 -0.1151 16 6 8.2176 -3.0681 1.9911 17 7 9.4727 -2.8171 2.2933 18 14 6.9556 -3.2880 3.3507 19 1 6.8903 -4.7200 3.7387 20 1 7.3495 -2.4735 4.5282 21 1 5.6236 -2.8453 2.8658 22 8 5.5431 -2.3868 0.7841 23 6 2.1980 -1.1971 -0.0056 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6581 2.1325 0.0006 28 1 5.3526 -0.0024 -0.0014 29 1 4.9082 -1.9374 -2.0268 30 1 4.1414 -3.5511 -1.9055 31 1 6.9820 -2.8983 -1.6992 32 1 6.2144 -4.5127 -1.5757 33 1 9.7430 -2.7457 3.2222 34 1 1.6577 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395165085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:48 Heat of formation + Delta-G solvation = -37.538823 kcal Electronic energy + Delta-G solvation = -17860.190877 eV Core-core repulsion = 14976.328278 eV Total energy + Delta-G solvation = -2883.862599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73377 -38.08307 -36.35322 -33.21845 -32.37239 -31.44962 -30.97112 -28.36987 -26.95684 -24.83033 -22.35361 -21.93811 -20.24193 -19.78923 -17.17501 -16.50243 -15.94762 -15.37565 -15.22853 -14.50465 -14.07228 -13.96972 -13.60022 -13.13256 -12.95974 -12.78908 -12.59562 -12.45038 -12.03564 -11.76971 -11.36042 -11.25453 -11.00777 -10.87317 -10.79176 -10.49500 -10.14857 -9.90474 -9.72601 -9.45558 -8.64854 -8.58531 -8.51953 -8.36790 -6.12253 -4.20879 1.25251 1.36631 2.25687 3.37070 3.44245 3.65888 3.68612 4.51422 4.56492 4.75127 4.99345 5.10406 5.22300 5.32389 5.35194 5.40093 5.45477 5.53001 5.54594 5.69250 5.80608 5.91798 5.99082 6.13587 6.20829 6.39257 6.41727 6.44619 6.55287 6.61484 6.78319 6.92506 7.10453 7.57634 8.06398 8.42344 8.88939 9.51160 10.98179 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006347 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.688903 B = 4410.408772 C = 4891.537391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.032 4.032 5 Cl -0.076 7.076 6 C -0.086 4.086 7 C -0.051 4.051 8 C 0.100 3.900 9 H 0.065 0.935 10 C -0.142 4.142 11 C -0.135 4.135 12 C 0.167 3.833 13 H 0.026 0.974 14 C -0.519 4.519 15 H 0.080 0.920 16 C 0.084 3.916 17 N -0.890 5.890 18 Si 0.868 3.132 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.226 1.226 22 O -0.361 6.361 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.359 5.152 -5.879 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.059 4.059 5 Cl -0.047 7.047 6 C -0.104 4.104 7 C -0.052 4.052 8 C 0.041 3.959 9 H 0.083 0.917 10 C -0.180 4.180 11 C -0.173 4.173 12 C 0.112 3.888 13 H 0.044 0.956 14 C -0.556 4.556 15 H 0.098 0.902 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.694 3.306 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.149 1.149 22 O -0.282 6.282 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.163 0.837 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.104 5.476 -5.582 18.807 hybrid contribution -0.342 -0.057 0.675 0.759 sum -17.446 5.419 -4.906 18.916 Atomic orbital electron populations 1.20749 0.90716 1.02844 1.02320 1.19715 0.96037 0.92306 1.00191 1.20822 0.91861 0.98368 1.02839 1.20915 0.92237 0.87177 1.05527 1.98358 1.76978 1.32393 1.96994 1.21076 1.01795 0.89659 0.97906 1.19833 0.93031 0.94774 0.97542 1.21715 0.89942 0.92080 0.92123 0.91701 1.22935 0.97887 1.00783 0.96413 1.22866 0.95244 0.99810 0.99350 1.20990 0.91322 0.87049 0.89437 0.95621 1.20950 0.89976 1.51059 0.93636 0.90244 1.25049 0.95109 0.92719 0.99138 1.69920 1.16483 1.47281 1.19054 0.87014 0.85034 0.77707 0.80847 1.21070 1.21688 1.14893 1.89650 1.24923 1.54595 1.59011 1.20929 0.93317 0.97790 1.01122 0.91132 0.91370 0.91535 0.85438 0.83741 0.91424 0.91698 0.90960 0.92143 0.92470 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.08 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.55 9.49 -39.55 -0.38 -1.93 16 4 C -0.03 -0.49 6.32 -39.49 -0.25 -0.74 16 5 Cl -0.08 -1.10 28.96 -51.86 -1.50 -2.60 16 6 C -0.09 -1.48 9.14 -39.55 -0.36 -1.84 16 7 C -0.05 -0.85 4.92 -104.63 -0.52 -1.36 16 8 C 0.10 1.80 3.50 -27.11 -0.09 1.71 16 9 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 10 C -0.14 -2.33 6.62 -25.17 -0.17 -2.50 16 11 C -0.13 -2.61 6.62 -25.16 -0.17 -2.77 16 12 C 0.17 3.94 2.50 -27.11 -0.07 3.88 16 13 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 14 C -0.52 -14.68 9.36 -34.44 -0.32 -15.00 16 15 H 0.08 2.40 7.82 -52.49 -0.41 1.99 16 16 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 17 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 18 Si 0.87 22.04 27.06 -169.99 -4.60 17.44 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.23 -5.61 5.45 56.52 0.31 -5.30 16 22 O -0.36 -8.37 7.45 -35.23 -0.26 -8.63 16 23 C -0.11 -1.53 9.34 -39.58 -0.37 -1.90 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.14 2.79 7.67 -52.49 -0.40 2.39 16 29 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.46 7.72 -51.93 -0.40 1.06 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -30.79 297.98 -8.76 -39.55 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.62 Total: -1.36 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -3.04 Total: -22.27 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.26 Total: -8.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.60 Total: 17.44 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.79 -8.76 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.011 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds