Wall clock time and date at job start Mon Mar 30 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99289 * 2 1 4 4 C 1.38340 * 119.98644 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.01293 * 179.97438 * 4 3 2 6 6 C 1.38372 * 119.97177 * 359.97438 * 4 3 2 7 7 C 1.38194 * 119.98569 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99310 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.33249 * 157.74534 * 8 7 6 10 10 C 1.54477 * 110.36871 * 279.99769 * 8 7 6 11 11 C 1.54507 * 104.06510 * 142.80899 * 10 8 7 12 12 C 1.54483 * 104.06211 * 359.97438 * 11 10 8 13 13 H 1.09002 * 110.37322 * 94.85326 * 12 11 10 14 14 C 1.50699 * 110.37332 * 217.08025 * 12 11 10 15 15 H 1.08001 * 120.00025 * 358.44931 * 14 12 11 16 16 C 1.37876 * 119.99873 * 178.44761 * 14 12 11 17 17 N 1.31520 * 119.99788 * 179.97438 * 16 14 12 18 18 Si 1.86796 * 120.00240 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.47246 * 89.99794 * 18 16 14 20 20 H 1.48506 * 109.47119 * 209.99951 * 18 16 14 21 21 H 1.48502 * 109.46700 * 329.99516 * 18 16 14 22 22 O 1.44428 * 104.89902 * 335.96812 * 12 11 10 23 23 C 1.38223 * 119.99366 * 180.27025 * 2 1 3 24 24 H 1.09004 * 109.46802 * 90.00188 * 1 2 3 25 25 H 1.08992 * 109.47340 * 210.00172 * 1 2 3 26 26 H 1.09001 * 109.47071 * 330.00572 * 1 2 3 27 27 H 1.07995 * 120.01079 * 0.03979 * 3 2 1 28 28 H 1.07999 * 120.00508 * 179.97438 * 6 4 3 29 29 H 1.09000 * 110.51486 * 24.16342 * 10 8 7 30 30 H 1.09000 * 110.62726 * 261.50960 * 10 8 7 31 31 H 1.09005 * 110.51421 * 241.35469 * 11 10 8 32 32 H 1.09001 * 110.51335 * 118.64380 * 11 10 8 33 33 H 0.97004 * 119.99841 * 180.02562 * 17 16 14 34 34 H 1.07995 * 119.98598 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5814 1.1971 -0.0005 5 17 4.4499 2.7002 -0.0012 6 6 4.2726 -0.0017 -0.0005 7 6 3.5806 -1.1979 -0.0005 8 6 4.3331 -2.5036 -0.0011 9 1 3.7029 -3.3042 0.3860 10 6 4.8189 -2.8435 -1.4276 11 6 6.2066 -3.4865 -1.2084 12 6 6.3954 -3.4584 0.3246 13 1 6.0830 -4.4063 0.7629 14 6 7.8335 -3.1701 0.6709 15 1 8.5633 -3.0434 -0.1151 16 6 8.2176 -3.0681 1.9911 17 7 9.4727 -2.8171 2.2933 18 14 6.9556 -3.2880 3.3507 19 1 6.8903 -4.7200 3.7387 20 1 7.3495 -2.4735 4.5282 21 1 5.6236 -2.8453 2.8658 22 8 5.5431 -2.3868 0.7841 23 6 2.1980 -1.1971 -0.0056 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6581 2.1325 0.0006 28 1 5.3526 -0.0024 -0.0014 29 1 4.9082 -1.9374 -2.0268 30 1 4.1414 -3.5511 -1.9055 31 1 6.9820 -2.8983 -1.6992 32 1 6.2144 -4.5127 -1.5757 33 1 9.7430 -2.7457 3.2222 34 1 1.6577 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395165085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:48 Heat of formation + Delta-G solvation = -54.956594 kcal Electronic energy + Delta-G solvation = -17860.946168 eV Core-core repulsion = 14976.328278 eV Total energy + Delta-G solvation = -2884.617890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96836 -39.52837 -37.48332 -34.94158 -33.88009 -32.84422 -32.38495 -30.01636 -27.83995 -26.53325 -23.75674 -23.13410 -21.81348 -21.13332 -19.19778 -17.74572 -17.31591 -16.84081 -16.58021 -16.11975 -15.51979 -15.16848 -14.88926 -14.73220 -14.45071 -14.13857 -13.69242 -13.64172 -13.20955 -13.00526 -12.87181 -12.66161 -12.45021 -12.30624 -12.03812 -11.87461 -11.79550 -11.65182 -11.46862 -11.28175 -10.77787 -10.28312 -9.64138 -9.58841 -8.37146 -6.49607 0.16223 0.26782 1.13305 1.33615 1.38381 1.65149 2.39703 2.55427 2.91716 3.43014 3.71783 3.82987 4.00173 4.09170 4.14081 4.24628 4.36072 4.41921 4.44852 4.57502 4.68397 4.85293 4.90048 4.91007 4.99518 5.01651 5.19055 5.25219 5.28969 5.38690 5.48324 5.52476 5.59115 5.87011 6.19150 6.34609 6.66416 7.26395 8.77234 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006347 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.688903 B = 4410.408772 C = 4891.537391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.042 4.042 5 Cl -0.079 7.079 6 C -0.115 4.115 7 C -0.069 4.069 8 C 0.093 3.907 9 H 0.088 0.912 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.166 3.834 13 H 0.034 0.966 14 C -0.528 4.528 15 H 0.040 0.960 16 C 0.026 3.974 17 N -0.940 5.940 18 Si 0.934 3.066 19 H -0.270 1.270 20 H -0.296 1.296 21 H -0.215 1.215 22 O -0.391 6.391 23 C -0.109 4.109 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.267 0.733 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 4.686 -6.126 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.069 4.069 5 Cl -0.051 7.051 6 C -0.134 4.134 7 C -0.069 4.069 8 C 0.035 3.965 9 H 0.105 0.895 10 C -0.166 4.166 11 C -0.171 4.171 12 C 0.110 3.890 13 H 0.052 0.948 14 C -0.565 4.565 15 H 0.058 0.942 16 C -0.173 4.173 17 N -0.580 5.580 18 Si 0.757 3.243 19 H -0.195 1.195 20 H -0.223 1.223 21 H -0.138 1.138 22 O -0.312 6.312 23 C -0.126 4.126 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.170 0.830 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.627 5.006 -5.851 22.957 hybrid contribution 1.026 0.151 0.657 1.227 sum -20.601 5.157 -5.194 21.863 Atomic orbital electron populations 1.20852 0.87530 1.04252 1.03814 1.20186 0.98137 0.91287 0.97621 1.21176 0.90772 1.00088 1.01497 1.21025 0.93258 0.86442 1.06164 1.98351 1.77361 1.32302 1.97044 1.20867 1.00229 0.91405 1.00876 1.19801 0.94357 0.93435 0.99317 1.22024 0.88396 0.93882 0.92174 0.89467 1.22883 0.96408 1.01398 0.95961 1.22795 0.96731 1.01306 0.96259 1.20841 0.88719 0.87175 0.92279 0.94843 1.21276 0.92467 1.50082 0.92712 0.94210 1.25946 0.96892 0.92648 1.01815 1.70059 1.18618 1.49688 1.19595 0.85991 0.82783 0.78167 0.77334 1.19525 1.22251 1.13761 1.89533 1.27075 1.54236 1.60312 1.21226 0.91909 0.99703 0.99810 0.89407 0.89992 0.90223 0.82981 0.87457 0.91604 0.87696 0.93187 0.89714 0.92400 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.54 16 2 C -0.07 -1.44 5.88 -19.87 -0.12 -1.56 16 3 C -0.12 -2.67 9.49 22.29 0.21 -2.46 16 4 C -0.04 -1.25 6.32 22.33 0.14 -1.11 16 5 Cl -0.08 -2.28 28.96 -2.72 -0.08 -2.36 16 6 C -0.11 -3.98 9.14 22.29 0.20 -3.78 16 7 C -0.07 -2.13 4.92 -19.87 -0.10 -2.23 16 8 C 0.09 3.15 3.50 30.35 0.11 3.26 16 9 H 0.09 2.56 8.06 -2.39 -0.02 2.54 16 10 C -0.13 -3.93 6.62 31.61 0.21 -3.72 16 11 C -0.13 -5.07 6.62 31.61 0.21 -4.86 16 12 C 0.17 7.81 2.50 30.35 0.08 7.89 16 13 H 0.03 1.54 7.57 -2.39 -0.02 1.52 16 14 C -0.53 -31.12 9.36 25.60 0.24 -30.88 16 15 H 0.04 2.57 7.82 -2.91 -0.02 2.54 16 16 C 0.03 1.59 5.47 84.65 0.46 2.06 16 17 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 18 Si 0.93 46.41 27.06 68.60 1.86 48.26 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 21 H -0.22 -10.25 5.45 99.48 0.54 -9.70 16 22 O -0.39 -17.99 7.45 -148.98 -1.11 -19.10 16 23 C -0.11 -2.50 9.34 22.27 0.21 -2.30 16 24 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 26 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.11 4.44 7.67 -2.91 -0.02 4.41 16 29 H 0.07 2.03 7.85 -2.39 -0.02 2.01 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 2.09 7.72 -2.38 -0.02 2.07 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 33 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.65 297.98 4.46 -66.20 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.92 Total: 7.36 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 2.57 Total: -40.23 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.11 Total: -19.10 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.86 Total: 48.26 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -70.65 4.46 -66.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.239 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds